Cla002040 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002040
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Late embryogenesis abundant hydroxyproline-rich glycoprotein (AHRD V1 **-- Q1PEU2_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1
Location	Chr8 : 10401090 .. 10401935 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATTCGCCATTGAAACCGCCGCTCCAGAGGCCCCCTGGCTACAAGGATCCCAACACCTCCGCCTCCTCCACCGCCTCCGCCCCTCACCGTCCACCGGCGCTCAGGAACAAGCCTCGCCTTCCCTCCTCCTACAAGCCCAAGAGGAGGAAACGCAACTGCTGCAGAACCTGCTGCTGCGTCTTCTGTTTTCTCATCCTCTTCCTCATCGTCGTCGCCGCTCTCGCCCTTGCCCTCTTCTACCTAATTTACGACCCCAAGCTCCCCGTCTTCCACCTCCTCGCCTTCCGGATCTCCTCCTTTAAAGTCTCCGCCACGCCCGACGGATCCTTCCTCGACGCCCAGGTCTCCATCCGAGTCGAGTTCAAGAATCCCAACGACAAGCTCTCCATCAGGTACGGAAAGATTGAGTACGATGTGACGGTGGGGCAGGCCACGGAGTTCGGCCGACGGGAGGTGCCCGGATTCACGCAGGGGAGGAAGAATACGACGACGGTGAAGGCGGAGGCGGCGGTGAAAGGAAAGATGCTCGCGGTTGAGGACGCGGCCAGGCTGTTGTCGAGATTTCAGAGTAAGGCGATGGAGGTGAAAGTGGAGGCGGAGACGGCGGTGGGAGTGGCGGTTCAAGGCTGGGGATTGGGTCCGATCACCGTGAAGTTGGATTGTGAGTCTAAATTGAGGAACATTGAGGCTGGTGATATGCCTATATGCAACATCAATTTGCTCAGATGGTATTCTCTTCCTTTTCTTTTTCTCTTTTTCCATCATATCTTATATTATAATATAACTCACATATCCAAGAGTACACCAATCATTATCCATTTTATTCAATTTGTCCAATAA

mRNA sequence

ATGGCGGATTCGCCATTGAAACCGCCGCTCCAGAGGCCCCCTGGCTACAAGGATCCCAACACCTCCGCCTCCTCCACCGCCTCCGCCCCTCACCGTCCACCGGCGCTCAGGAACAAGCCTCGCCTTCCCTCCTCCTACAAGCCCAAGAGGAGGAAACGCAACTGCTGCAGAACCTGCTGCTGCGTCTTCTGTTTTCTCATCCTCTTCCTCATCGTCGTCGCCGCTCTCGCCCTTGCCCTCTTCTACCTAATTTACGACCCCAAGCTCCCCGTCTTCCACCTCCTCGCCTTCCGGATCTCCTCCTTTAAAGTCTCCGCCACGCCCGACGGATCCTTCCTCGACGCCCAGGTCTCCATCCGAGTCGAGTTCAAGAATCCCAACGACAAGCTCTCCATCAGGTACGGAAAGATTGAGTACGATGTGACGGTGGGGCAGGCCACGGAGTTCGGCCGACGGGAGGTGCCCGGATTCACGCAGGGGAGGAAGAATACGACGACGGTGAAGGCGGAGGCGGCGGTGAAAGGAAAGATGCTCGCGGTTGAGGACGCGGCCAGGCTGTTGTCGAGATTTCAGAGTAAGGCGATGGAGGTGAAAGTGGAGGCGGAGACGGCGGTGGGAGTGGCGGTTCAAGGCTGGGGATTGGGTCCGATCACCGTGAAGTTGGATTGTGAGTCTAAATTGAGGAACATTGAGGCTGGTGATATGCCTATATGCAACATCAATTTGCTCAGATGGTATTCTCTTCCTTTTCTTTTTCTCTTTTTCCATCATATCTTATATTATAATATAACTCACATATCCAAGAGTACACCAATCATTATCCATTTTATTCAATTTGTCCAATAA

Coding sequence (CDS)

ATGGCGGATTCGCCATTGAAACCGCCGCTCCAGAGGCCCCCTGGCTACAAGGATCCCAACACCTCCGCCTCCTCCACCGCCTCCGCCCCTCACCGTCCACCGGCGCTCAGGAACAAGCCTCGCCTTCCCTCCTCCTACAAGCCCAAGAGGAGGAAACGCAACTGCTGCAGAACCTGCTGCTGCGTCTTCTGTTTTCTCATCCTCTTCCTCATCGTCGTCGCCGCTCTCGCCCTTGCCCTCTTCTACCTAATTTACGACCCCAAGCTCCCCGTCTTCCACCTCCTCGCCTTCCGGATCTCCTCCTTTAAAGTCTCCGCCACGCCCGACGGATCCTTCCTCGACGCCCAGGTCTCCATCCGAGTCGAGTTCAAGAATCCCAACGACAAGCTCTCCATCAGGTACGGAAAGATTGAGTACGATGTGACGGTGGGGCAGGCCACGGAGTTCGGCCGACGGGAGGTGCCCGGATTCACGCAGGGGAGGAAGAATACGACGACGGTGAAGGCGGAGGCGGCGGTGAAAGGAAAGATGCTCGCGGTTGAGGACGCGGCCAGGCTGTTGTCGAGATTTCAGAGTAAGGCGATGGAGGTGAAAGTGGAGGCGGAGACGGCGGTGGGAGTGGCGGTTCAAGGCTGGGGATTGGGTCCGATCACCGTGAAGTTGGATTGTGAGTCTAAATTGAGGAACATTGAGGCTGGTGATATGCCTATATGCAACATCAATTTGCTCAGATGGTATTCTCTTCCTTTTCTTTTTCTCTTTTTCCATCATATCTTATATTATAATATAACTCACATATCCAAGAGTACACCAATCATTATCCATTTTATTCAATTTGTCCAATAA

Protein sequence

MADSPLKPPLQRPPGYKDPNTSASSTASAPHRPPALRNKPRLPSSYKPKRRKRNCCRTCCCVFCFLILFLIVVAALALALFYLIYDPKLPVFHLLAFRISSFKVSATPDGSFLDAQVSIRVEFKNPNDKLSIRYGKIEYDVTVGQATEFGRREVPGFTQGRKNTTTVKAEAAVKGKMLAVEDAARLLSRFQSKAMEVKVEAETAVGVAVQGWGLGPITVKLDCESKLRNIEAGDMPICNINLLRWYSLPFLFLFFHHILYYNITHISKSTPIIIHFIQFVQ

Homology

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BLAST of Cla002040 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-06
Identity = 46/188 (24.47%), Postives = 82/188 (43.62%), Query Frame = 1


Query: 40  PRLPSSYKPKRRKRNCCRTCCCVFCFLILFLIVVAALALALFYLIYDPKLPVFHLLAFRI 99
           P  P  Y  +   R C      +F  +I+ LIV+  +A  +F+LI  P+   FH+    +
Sbjct: 18  PPAPKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASL 77

Query: 100 SSFKVSATPDGSFLDAQVSIRVEFKNPNDKLSIRYGKIEYDVTVGQATEFGRREVPGFTQ 159
           + F    +PD + L   +++ V  +NPN ++ + Y +IE      +   F    +  F Q
Sbjct: 78  TRFD-HTSPD-NILRYNLALTVPVRNPNKRIGLYYDRIEAHAYY-EGKRFSTITLTPFYQ 137

Query: 160 GRKNTTTVKAEAAVKGKMLAVEDAAR---LLSRFQSKAMEVKVEAETAVGVAVQGWGLGP 219
           G KNTT +      +G+ L + +A +   L +   S    ++++    V   +       
Sbjct: 138 GHKNTTVL--TPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVRFKLGDLKFRR 197

Query: 220 ITVKLDCE 225
           I  K+DC+
Sbjct: 198 IKPKVDCD 200

[Close]

BLAST of Cla002040 vs. TrEMBL
Match: A0A0A0KCD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042460 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 1.7e-118
Identity = 211/251 (84.06%), Postives = 231/251 (92.03%), Query Frame = 1


Query: 1   MADSPLKPPLQRPPGYKDPNTSASSTASAP---HRPPALRNKPRLPSSYKPKRRKRNCCR 60
           MAD PLKPPLQ+PPGYKD NT+A+S++SA    H PP LR KPR PSSYKPK+RKRNCCR
Sbjct: 1   MADLPLKPPLQKPPGYKDHNTTATSSSSASTATHLPPPLRPKPRPPSSYKPKKRKRNCCR 60

Query: 61  TCCCVFCFLILFLIVVAALALALFYLIYDPKLPVFHLLAFRISSFKVSATPDGSFLDAQV 120
           TCCC+FCFLILFLIVVAALALALFYL+YDPKLPVFHLLAFRISSFKVS TPDGSFLD+QV
Sbjct: 61  TCCCIFCFLILFLIVVAALALALFYLLYDPKLPVFHLLAFRISSFKVSTTPDGSFLDSQV 120

Query: 121 SIRVEFKNPNDKLSIRYGKIEYDVTVGQATEFGRREVPGFTQGRKNTTTVKAEAAVKGKM 180
           SIRVEFKNPN+KLSI+YGKIEYDVTVGQATEFGRRE+ GFTQGR++TTTVKAEAAVK KM
Sbjct: 121 SIRVEFKNPNEKLSIKYGKIEYDVTVGQATEFGRRELAGFTQGRRSTTTVKAEAAVKNKM 180

Query: 181 LAVEDAARLLSRFQSKAMEVKVEAETAVGVAVQGWGLGPITVKLDCESKLRNIEAGDMPI 240
           LAVED  RLLS+FQSKA+EVKVEAET VGV VQGWGLGPITVKLDCESKL+NI+ GDMP 
Sbjct: 181 LAVEDGGRLLSKFQSKALEVKVEAETEVGVVVQGWGLGPITVKLDCESKLKNIDGGDMPT 240

Query: 241 CNINLLRWYSL 249
           CNINLLRW ++
Sbjct: 241 CNINLLRWINI 251

[Close]

BLAST of Cla002040 vs. TrEMBL
Match: A0A061DTS6_THECC (Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative OS=Theobroma cacao GN=TCM_005206 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.2e-57
Identity = 116/255 (45.49%), Postives = 161/255 (63.14%), Query Frame = 1


Query: 1   MADSPLKPPLQRPPGYKDPNTSASSTASAPHRPPALRNKPRLPSSYKPKRRKRNCCRTCC 60
           M + PLKP LQ+PPGYKDP+  A      P  PP    KP LP S+ PK+R+  CCR CC
Sbjct: 1   MPEPPLKPVLQKPPGYKDPSAPAVKPGFRP--PP---RKPVLPPSFHPKKRRGGCCRVCC 60

Query: 61  CVFCFLILFLIVVAALALALFYLIYDPKLPVFHLLAFRISSFKVSATPDGSFLDAQVSIR 120
           C FC   L LI++  +  A+FYL +DPKLP FH+ + RIS F V+  PDG++LDAQ + R
Sbjct: 61  CCFCIFFLILILLLLICGAVFYLWFDPKLPGFHVQSVRISRFNVTNKPDGTYLDAQTTTR 120

Query: 121 VEFKNPNDKLSIRYGKIEYDVTVGQA---TEFGRREVPGFTQGRKNTTTVKAEAAVKGKM 180
           +E KNPN K++  YG  E DV+VG+    TE G   V GFT G++NTT++K E  V  K+
Sbjct: 121 LEVKNPNAKMTYYYGNTEVDVSVGEGGDETELGTTTVHGFTMGKQNTTSLKVETKVINKL 180

Query: 181 LAVEDAARLLSRFQSKAMEVKVEAETAVGVAVQGWGLGPITVKLDCES-KLRNIEAGDMP 240
           +      RL +R++SK++ V VEA T +G+ V G  +G + V + C+   L+ ++ GDMP
Sbjct: 181 VDDGVGTRLQARYRSKSLRVSVEARTKIGLGVAGLKIGMVGVTVKCDGIALKRLDGGDMP 240

Query: 241 ICNINLLRWYSLPFL 252
            C IN+L+W   P +
Sbjct: 241 KCVINMLKWAQHPLI 250

[Close]

BLAST of Cla002040 vs. TrEMBL
Match: W9SAG5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003064 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 4.1e-56
Identity = 118/250 (47.20%), Postives = 167/250 (66.80%), Query Frame = 1


Query: 1   MADSPLKPP-LQRPPGYKDPNTSASSTASAPHRPPALRNKPRLPSSYKPKRRKRNCCRTC 60
           MA+ PLKPP LQ+PPGY+DP       A  P R      KP LP+S+ P++R+RN CRTC
Sbjct: 1   MAEQPLKPPPLQKPPGYRDPAAPGKPVARPPQR------KPVLPASFHPRKRRRNWCRTC 60

Query: 61  CC-VFCFLILFLIVVAALALALFYLIYDPKLPVFHLLAFRISSFKVSATPDGSFLDAQVS 120
           CC VF FL+L  + V A+A  +FYL ++PKLPVFHL + RI  F V+  PDG++LDA   
Sbjct: 61  CCFVFVFLLLLTLAV-AIAGGIFYLWFEPKLPVFHLQSLRIPQFNVTVKPDGTYLDAGTV 120

Query: 121 IRVEFKNPNDKLSIRYGKIEYDVTVG--QATEFGRREVPGFTQGRKNTTTVKAEAAVKGK 180
            R+E KNPN KL + YG    +V+VG  +  E GR+++ GFTQG++NTT++K E  VK +
Sbjct: 121 TRIEVKNPNGKLELYYGGTHVEVSVGEDEDAELGRKDLEGFTQGKENTTSLKVETTVKNQ 180

Query: 181 MLAVEDAARLLSRFQSKAMEVKVEAETAVGVAVQGWGLGPITVKLDCES-KLRNIEAGDM 240
           ++      RL S ++SK + VK+EA+T+VG  VQG  +G + V + C    L+ +++GDM
Sbjct: 181 LVDDGLGKRLKSGYKSKDLVVKIEAKTSVGYIVQGVKIGTVEVGVLCGGVSLKKLDSGDM 240

Query: 241 PICNINLLRW 246
           P C+I+LL+W
Sbjct: 241 PKCSIDLLKW 243

[Close]

BLAST of Cla002040 vs. TrEMBL
Match: A0A0D2QQD3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105400 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.6e-52
Identity = 106/252 (42.06%), Postives = 157/252 (62.30%), Query Frame = 1


Query: 1   MADSPLKPPLQRPPGYKDPNTSASSTASAPHRPPALRNKPRLPSSYKPKRRKRNCCRTCC 60
           M++ P+KP LQ+PPGYKDPN+ A      P  PP    KP LP S+ PK+RK +  R CC
Sbjct: 1   MSEPPVKPVLQKPPGYKDPNSPAGQRRFRP--PP---RKPVLPPSFHPKKRKTSYGRACC 60

Query: 61  CVFCFLILFLIVVAALALALFYLIYDPKLPVFHLLAFRISSFKVSATPDGSFLDAQVSIR 120
           C FC   L  +++  +  A+FYL +DP+LP FH+ +FRIS F V+  PDG++LDA+ + R
Sbjct: 61  CCFCIFFLIFLLLILICGAVFYLWFDPQLPGFHIQSFRISRFNVTKRPDGTYLDARTTTR 120

Query: 121 VEFKNPNDKLSIRYGKIEYDVTVGQA---TEFGRREVPGFTQGRKNTTTVKAEAAVKGKM 180
           +E KNPN K++  YG  E +++ G+    TE G   VP FT   KNT +++ E     K+
Sbjct: 121 LEVKNPNGKMTYYYGDTEVEISFGEGGYETELGTTTVPAFTMLEKNTRSLRVETIASNKL 180

Query: 181 LAVEDAARLLSRFQSKAMEVKVEAETAVGVAVQGWGLGPITVKLDCES-KLRNIEAGDMP 240
           +  E   +L +R++SK++ V VEA T VGV V G  +G + V + C+    + ++ GDMP
Sbjct: 181 VVDEVGNKLRARYRSKSLPVNVEARTKVGVGVAGLKIGMVGVTVKCDGMSKKQLDGGDMP 240

Query: 241 ICNINLLRWYSL 249
            C IN+L+W ++
Sbjct: 241 KCVINMLKWLNI 247

[Close]

BLAST of Cla002040 vs. TrEMBL
Match: M5XIM8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018680mg PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.6e-52
Identity = 106/255 (41.57%), Postives = 160/255 (62.75%), Query Frame = 1


Query: 4   SPLKPPLQRPPGYKDPNTSASSTASAPHRPPALRNKPRLPSSYKPKRRKR--NCCRTCCC 63
           SP+KP LQ+PPGY+ PN  A      P  PP    KP  P + + K++KR  +CC+ CCC
Sbjct: 5   SPVKPVLQKPPGYRTPNYPAQPVPGPP--PP---RKPVYPPTLRQKQKKRGGSCCKICCC 64

Query: 64  VFCFLILFLIVVAALALALFYLIYDPKLPVFHLLAFRISSFKVSATPDGSFLDAQVSIRV 123
           VFC  +L ++++ ALA  +FYL++DP+LP F+L++F+I  F   +  DG+ LD Q    V
Sbjct: 65  VFCAFLLIVVILVALAGGIFYLLFDPRLPAFYLISFQIPKFDAVSKSDGTHLDVQAVTSV 124

Query: 124 EFKNPNDKLSIRYGK-IEYDVTVGQATE----FGRREVPGFTQGRKNTTTVKAEAAVKGK 183
           E KNPN KL I Y +  E  +++G   +     G +EV GFTQ  +NTT VK E+ V+ K
Sbjct: 125 EVKNPNPKLDIYYSEGFEMSLSIGDENDGGLGIGTKEVKGFTQRHRNTTYVKVESGVRNK 184

Query: 184 MLAVEDAARLLSRFQSKAMEVKVEAETAVGVAVQGWGLGPITVKLDCES-KLRNIEAGDM 243
           ++      +LL +F+SK ++V +E +T VG  +QGW +G + + + C   +L+N++AGDM
Sbjct: 185 VVEQPVGKKLLGQFKSKEIKVALEGKTRVGYVIQGWRVGTMQINVLCGGVRLKNVDAGDM 244

Query: 244 PICNINLLRWYSLPF 251
           P C IN  +WY++ F
Sbjct: 245 PKCTINAFKWYAILF 254

[Close]

BLAST of Cla002040 vs. NCBI nr
Match: gi|659089922|ref|XP_008445748.1| (PREDICTED: uncharacterized protein LOC103488682 [Cucumis melo])

HSP 1 Score: 436.0 bits (1120), Expect = 4.9e-119
Identity = 212/251 (84.46%), Postives = 234/251 (93.23%), Query Frame = 1


Query: 1   MADSPLKPPLQRPPGYKDPNTSASSTASAP---HRPPALRNKPRLPSSYKPKRRKRNCCR 60
           MAD P+KPPLQ+PPGYKD +T+A+S++SA    H PP  R+KPRLPSSYKPK+RKRNCCR
Sbjct: 1   MADLPMKPPLQKPPGYKDHHTAATSSSSASTVTHLPPPPRSKPRLPSSYKPKKRKRNCCR 60

Query: 61  TCCCVFCFLILFLIVVAALALALFYLIYDPKLPVFHLLAFRISSFKVSATPDGSFLDAQV 120
           TCCC+FCFLILFLIVVAALALALFYLIYDPKLPVFHLLAFRIS+FKVSATPDGSFLDAQV
Sbjct: 61  TCCCIFCFLILFLIVVAALALALFYLIYDPKLPVFHLLAFRISTFKVSATPDGSFLDAQV 120

Query: 121 SIRVEFKNPNDKLSIRYGKIEYDVTVGQATEFGRREVPGFTQGRKNTTTVKAEAAVKGKM 180
           SIRVEFKNPNDKLSI+YGKIEYDV VGQATEFGRRE+ GFTQ R++TTTVKAEAAVK KM
Sbjct: 121 SIRVEFKNPNDKLSIKYGKIEYDVMVGQATEFGRRELAGFTQDRRSTTTVKAEAAVKNKM 180

Query: 181 LAVEDAARLLSRFQSKAMEVKVEAETAVGVAVQGWGLGPITVKLDCESKLRNIEAGDMPI 240
           LAVED ARLLS+FQSKA+EVKVEAETAVGV +QGWGLGPITVKLDCE+KL+NIE GDMPI
Sbjct: 181 LAVEDGARLLSKFQSKALEVKVEAETAVGVVIQGWGLGPITVKLDCETKLKNIEGGDMPI 240

Query: 241 CNINLLRWYSL 249
           CNINLLRW ++
Sbjct: 241 CNINLLRWINI 251

[Close]

BLAST of Cla002040 vs. NCBI nr
Match: gi|449446257|ref|XP_004140888.1| (PREDICTED: uncharacterized protein LOC101205096 [Cucumis sativus])

HSP 1 Score: 433.7 bits (1114), Expect = 2.4e-118
Identity = 211/251 (84.06%), Postives = 231/251 (92.03%), Query Frame = 1


Query: 1   MADSPLKPPLQRPPGYKDPNTSASSTASAP---HRPPALRNKPRLPSSYKPKRRKRNCCR 60
           MAD PLKPPLQ+PPGYKD NT+A+S++SA    H PP LR KPR PSSYKPK+RKRNCCR
Sbjct: 1   MADLPLKPPLQKPPGYKDHNTTATSSSSASTATHLPPPLRPKPRPPSSYKPKKRKRNCCR 60

Query: 61  TCCCVFCFLILFLIVVAALALALFYLIYDPKLPVFHLLAFRISSFKVSATPDGSFLDAQV 120
           TCCC+FCFLILFLIVVAALALALFYL+YDPKLPVFHLLAFRISSFKVS TPDGSFLD+QV
Sbjct: 61  TCCCIFCFLILFLIVVAALALALFYLLYDPKLPVFHLLAFRISSFKVSTTPDGSFLDSQV 120

Query: 121 SIRVEFKNPNDKLSIRYGKIEYDVTVGQATEFGRREVPGFTQGRKNTTTVKAEAAVKGKM 180
           SIRVEFKNPN+KLSI+YGKIEYDVTVGQATEFGRRE+ GFTQGR++TTTVKAEAAVK KM
Sbjct: 121 SIRVEFKNPNEKLSIKYGKIEYDVTVGQATEFGRRELAGFTQGRRSTTTVKAEAAVKNKM 180

Query: 181 LAVEDAARLLSRFQSKAMEVKVEAETAVGVAVQGWGLGPITVKLDCESKLRNIEAGDMPI 240
           LAVED  RLLS+FQSKA+EVKVEAET VGV VQGWGLGPITVKLDCESKL+NI+ GDMP 
Sbjct: 181 LAVEDGGRLLSKFQSKALEVKVEAETEVGVVVQGWGLGPITVKLDCESKLKNIDGGDMPT 240

Query: 241 CNINLLRWYSL 249
           CNINLLRW ++
Sbjct: 241 CNINLLRWINI 251

[Close]

BLAST of Cla002040 vs. NCBI nr
Match: gi|702333839|ref|XP_010055051.1| (PREDICTED: protein YLS9-like [Eucalyptus grandis])

HSP 1 Score: 233.4 bits (594), Expect = 4.8e-58
Identity = 111/248 (44.76%), Postives = 162/248 (65.32%), Query Frame = 1


Query: 1   MADSPLKPPLQRPPGYKDPNTSASSTASAPHRPPALRNKPRLPSSYKPKRRKRNCCRTCC 60
           MA+ P KP LQ+PPGY+DP+       + P+R      KP +P S  P++++R+CCR+CC
Sbjct: 1   MAEPPQKPMLQKPPGYRDPSVVVQQPPTQPYR------KPVMPPSMYPRKKRRSCCRSCC 60

Query: 61  CVFCFLILFLIVVAALALALFYLIYDPKLPVFHLLAFRISSFKVSATPDGSFLDAQVSIR 120
           C  C LI  ++ V  LA AL YL + PK+PVFHL +FRI  F V+A PDG++L AQ  +R
Sbjct: 61  CCLCVLIFLILCVLILAGALSYLWFGPKIPVFHLQSFRIPRFNVTAKPDGTYLKAQTVLR 120

Query: 121 VEFKNPNDKLSIRYGKIEYDVTVGQ--ATEFGRREVPGFTQGRKNTTTVKAEAAVKGKML 180
           VE KNPN KL + YG  + D+++G+    E G   +PGFTQG+KN T++K    V+ +++
Sbjct: 121 VEVKNPNQKLGLYYGGTDVDISLGRGGGIELGSDSLPGFTQGKKNVTSLKVTTEVRDELV 180

Query: 181 AVEDAARLLSRFQSKAMEVKVEAETAVGVAVQGWGLGPITVKLDC-ESKLRNIEAGDMPI 240
                A L S ++SK++ VKV+  T+VG  +QGW +G + V ++C E  ++ +E G+MP 
Sbjct: 181 EDGAGAELRSGYRSKSLVVKVKVRTSVGAIIQGWKVGRVRVNVECGEVAMKEVEGGEMPK 240

Query: 241 CNINLLRW 246
           C INLLRW
Sbjct: 241 CKINLLRW 242

[Close]

BLAST of Cla002040 vs. NCBI nr
Match: gi|590721513|ref|XP_007051635.1| (Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao])

HSP 1 Score: 230.7 bits (587), Expect = 3.1e-57
Identity = 116/255 (45.49%), Postives = 161/255 (63.14%), Query Frame = 1


Query: 1   MADSPLKPPLQRPPGYKDPNTSASSTASAPHRPPALRNKPRLPSSYKPKRRKRNCCRTCC 60
           M + PLKP LQ+PPGYKDP+  A      P  PP    KP LP S+ PK+R+  CCR CC
Sbjct: 1   MPEPPLKPVLQKPPGYKDPSAPAVKPGFRP--PP---RKPVLPPSFHPKKRRGGCCRVCC 60

Query: 61  CVFCFLILFLIVVAALALALFYLIYDPKLPVFHLLAFRISSFKVSATPDGSFLDAQVSIR 120
           C FC   L LI++  +  A+FYL +DPKLP FH+ + RIS F V+  PDG++LDAQ + R
Sbjct: 61  CCFCIFFLILILLLLICGAVFYLWFDPKLPGFHVQSVRISRFNVTNKPDGTYLDAQTTTR 120

Query: 121 VEFKNPNDKLSIRYGKIEYDVTVGQA---TEFGRREVPGFTQGRKNTTTVKAEAAVKGKM 180
           +E KNPN K++  YG  E DV+VG+    TE G   V GFT G++NTT++K E  V  K+
Sbjct: 121 LEVKNPNAKMTYYYGNTEVDVSVGEGGDETELGTTTVHGFTMGKQNTTSLKVETKVINKL 180

Query: 181 LAVEDAARLLSRFQSKAMEVKVEAETAVGVAVQGWGLGPITVKLDCES-KLRNIEAGDMP 240
           +      RL +R++SK++ V VEA T +G+ V G  +G + V + C+   L+ ++ GDMP
Sbjct: 181 VDDGVGTRLQARYRSKSLRVSVEARTKIGLGVAGLKIGMVGVTVKCDGIALKRLDGGDMP 240

Query: 241 ICNINLLRWYSLPFL 252
            C IN+L+W   P +
Sbjct: 241 KCVINMLKWAQHPLI 250

[Close]

BLAST of Cla002040 vs. NCBI nr
Match: gi|703148826|ref|XP_010109444.1| (hypothetical protein L484_003064 [Morus notabilis])

HSP 1 Score: 226.5 bits (576), Expect = 5.9e-56
Identity = 118/250 (47.20%), Postives = 167/250 (66.80%), Query Frame = 1


Query: 1   MADSPLKPP-LQRPPGYKDPNTSASSTASAPHRPPALRNKPRLPSSYKPKRRKRNCCRTC 60
           MA+ PLKPP LQ+PPGY+DP       A  P R      KP LP+S+ P++R+RN CRTC
Sbjct: 1   MAEQPLKPPPLQKPPGYRDPAAPGKPVARPPQR------KPVLPASFHPRKRRRNWCRTC 60

Query: 61  CC-VFCFLILFLIVVAALALALFYLIYDPKLPVFHLLAFRISSFKVSATPDGSFLDAQVS 120
           CC VF FL+L  + V A+A  +FYL ++PKLPVFHL + RI  F V+  PDG++LDA   
Sbjct: 61  CCFVFVFLLLLTLAV-AIAGGIFYLWFEPKLPVFHLQSLRIPQFNVTVKPDGTYLDAGTV 120

Query: 121 IRVEFKNPNDKLSIRYGKIEYDVTVG--QATEFGRREVPGFTQGRKNTTTVKAEAAVKGK 180
            R+E KNPN KL + YG    +V+VG  +  E GR+++ GFTQG++NTT++K E  VK +
Sbjct: 121 TRIEVKNPNGKLELYYGGTHVEVSVGEDEDAELGRKDLEGFTQGKENTTSLKVETTVKNQ 180

Query: 181 MLAVEDAARLLSRFQSKAMEVKVEAETAVGVAVQGWGLGPITVKLDCES-KLRNIEAGDM 240
           ++      RL S ++SK + VK+EA+T+VG  VQG  +G + V + C    L+ +++GDM
Sbjct: 181 LVDDGLGKRLKSGYKSKDLVVKIEAKTSVGYIVQGVKIGTVEVGVLCGGVSLKKLDSGDM 240

Query: 241 PICNINLLRW 246
           P C+I+LL+W
Sbjct: 241 PKCSIDLLKW 243

The following BLAST results are available for this feature:

BLAST of Cla002040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLS9_ARATH	1.5e-06	24.47	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]

BLAST of Cla002040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCD8_CUCSA	1.7e-118	84.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042460 PE=4 SV=1	[more]
A0A061DTS6_THECC	2.2e-57	45.49	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative OS...	[more]
W9SAG5_9ROSA	4.1e-56	47.20	Uncharacterized protein OS=Morus notabilis GN=L484_003064 PE=4 SV=1	[more]
A0A0D2QQD3_GOSRA	1.6e-52	42.06	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105400 PE=4 SV=1	[more]
M5XIM8_PRUPE	1.6e-52	41.57	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018680mg PE=4 SV=1	[more]

BLAST of Cla002040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089922\|ref\|XP_008445748.1\|	4.9e-119	84.46	PREDICTED: uncharacterized protein LOC103488682 [Cucumis melo]	[more]
gi\|449446257\|ref\|XP_004140888.1\|	2.4e-118	84.06	PREDICTED: uncharacterized protein LOC101205096 [Cucumis sativus]	[more]
gi\|702333839\|ref\|XP_010055051.1\|	4.8e-58	44.76	PREDICTED: protein YLS9-like [Eucalyptus grandis]	[more]
gi\|590721513\|ref\|XP_007051635.1\|	3.1e-57	45.49	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [T...	[more]
gi\|703148826\|ref\|XP_010109444.1\|	5.9e-56	47.20	hypothetical protein L484_003064 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002040	Cla002040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 121..223 score: 1.1
None	No IPR available	PANTHER	PTHR31234	FAMILY NOT NAMED	coord: 1..253 score: 9.2
None	No IPR available	PANTHER	PTHR31234:SF12	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 1..253 score: 9.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002040	Cla97C08G147190	Watermelon (97103) v2	wmwmbB105
Cla002040	ClCG08G003840	Watermelon (Charleston Gray)	wcgwmB407

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002040	Cucumber (Gy14) v1	cgywmB656
Cla002040	Wild cucumber (PI 183967)	cpiwmB490
Cla002040	Watermelon (Charleston Gray)	wcgwmB410
Cla002040	Cucumber (Chinese Long) v2	cuwmB475
Cla002040	Cucumber (Gy14) v2	cgybwmB446
Cla002040	Cucumber (Chinese Long) v3	cucwmB501