Cla002036 (gene) Watermelon (97103) v1

NameCla002036
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr8 : 10293137 .. 10293493 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACAAAGGAGAGGCATAGGTTGCCCTTTGCTAGGGTATGTGTGGAGGTTTCGGGTGATTCCATGTTGCCTGCCTCGGTGGATGTTCGGATTAGATGTTGTGATTTTACAATCTCGATTATTTATGAGTGGAAGCCAAAAAGATTTTCCCATTGCCATTCGTTTGGGCATTGTAATGGGCAATGCCAAAAAGTAAAGTGGGTGACTAAGAAGGTTCAGATGGATGGCTTGAGGAGTAATGAAAGGAAAAGTGAGGTGGAGGTGAAGAATTTGGTGGGCCCTAGCTCGTCTAGAGAAGGTAGTTTGGAAGAGGGGGAGGTTGACTGTCACACCCTCTCCCAGGTTTCCTCCTAA

mRNA sequence

ATGGCTACAAAGGAGAGGCATAGGTTGCCCTTTGCTAGGGTATGTGTGGAGGTTTCGGGTGATTCCATGTTGCCTGCCTCGGTGGATGTTCGGATTAGATGTTGTGATTTTACAATCTCGATTATTTATGAGTGGAAGCCAAAAAGATTTTCCCATTGCCATTCGTTTGGGCATTGTAATGGGCAATGCCAAAAAGTAAAGTGGGTGACTAAGAAGGTTCAGATGGATGGCTTGAGGAGTAATGAAAGGAAAAGTGAGGTGGAGGTGAAGAATTTGGTGGGCCCTAGCTCGTCTAGAGAAGGTAGTTTGGAAGAGGGGGAGGTTGACTGTCACACCCTCTCCCAGGTTTCCTCCTAA

Coding sequence (CDS)

ATGGCTACAAAGGAGAGGCATAGGTTGCCCTTTGCTAGGGTATGTGTGGAGGTTTCGGGTGATTCCATGTTGCCTGCCTCGGTGGATGTTCGGATTAGATGTTGTGATTTTACAATCTCGATTATTTATGAGTGGAAGCCAAAAAGATTTTCCCATTGCCATTCGTTTGGGCATTGTAATGGGCAATGCCAAAAAGTAAAGTGGGTGACTAAGAAGGTTCAGATGGATGGCTTGAGGAGTAATGAAAGGAAAAGTGAGGTGGAGGTGAAGAATTTGGTGGGCCCTAGCTCGTCTAGAGAAGGTAGTTTGGAAGAGGGGGAGGTTGACTGTCACACCCTCTCCCAGGTTTCCTCCTAA

Protein sequence

MATKERHRLPFARVCVEVSGDSMLPASVDVRIRCCDFTISIIYEWKPKRFSHCHSFGHCNGQCQKVKWVTKKVQMDGLRSNERKSEVEVKNLVGPSSSREGSLEEGEVDCHTLSQVSS
BLAST of Cla002036 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-11
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1

Query: 1   MATKERHRLPFARVCVEVSGDSMLPASVDVRIRCCDFTISIIYEWKPKRFSHCHSFGHCN 60
           +ATKER RL +ARVCV++ GDS +PA + V +R  DF +SI YEWKP + + C  FGH  
Sbjct: 247 LATKERRRLSYARVCVKLDGDSHMPAEITVSLRGVDFIVSINYEWKPWKCNLCCVFGHSG 306

Query: 61  GQCQK 66
           G+C +
Sbjct: 307 GKCHR 311

BLAST of Cla002036 vs. NCBI nr
Match: gi|659121150|ref|XP_008460523.1| (PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 5.4e-11
Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = 1

Query: 1   MATKERHRLPFARVCVEVSGDSMLPASVDVRIRCCDFTISIIYEWKPKRFSHCHSFGHCN 60
           +ATKER RL +ARVCVE+ G S +P+ + V +R  +F +S+ YEWKP++ + C +FGH +
Sbjct: 395 LATKERRRLSYARVCVELEGGSNMPSEITVNLRGVEFNVSVKYEWKPRKCNLCGAFGHSS 454

Query: 61  GQCQK 66
            +C +
Sbjct: 455 SKCSR 459

BLAST of Cla002036 vs. NCBI nr
Match: gi|659126448|ref|XP_008463187.1| (PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 5.4e-11
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 1

Query: 1   MATKERHRLPFARVCVEVSGDSMLPASVDVRIRCCDFTISIIYEWKPKRFSHCHSFGHCN 60
           +ATKER RL +ARVCVE+   S +PA + V +R  DF +S+ YEWKP++ + C +FGH  
Sbjct: 275 LATKERRRLSYARVCVELEAGSNMPAEITVSLRGVDFNVSVNYEWKPRKCNLCCAFGHSG 334

Query: 61  GQCQKVKWVTKKVQMDGLRSNERKSEVEVKNLVGPSSSREGSLEEGEV 109
             C +    +K +Q + +   +         +V  S  +   LEEGE+
Sbjct: 335 SNCSR-SVESKTIQEEVVHKGDDVDSEPCGEVVLESFKQ---LEEGEI 378

BLAST of Cla002036 vs. NCBI nr
Match: gi|659133524|ref|XP_008466769.1| (PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-10
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1

Query: 1  MATKERHRLPFARVCVEVSGDSMLPASVDVRIRCCDFTISIIYEWKPKRFSHCHSFGHCN 60
          + TKER RL +ARVCVE+ G S +PA + V +   DF +SI YEWKP++ + C +FGH  
Sbjct: 24 LTTKERRRLSYARVCVELEGGSNMPAQITVSLGGVDFNVSINYEWKPRKCNLCCAFGHSG 83

Query: 61 GQCQK 66
           +C +
Sbjct: 84 SKCSR 88

BLAST of Cla002036 vs. NCBI nr
Match: gi|778697698|ref|XP_004142722.2| (PREDICTED: uncharacterized protein LOC101204295 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-09
Identity = 29/66 (43.94%), Postives = 48/66 (72.73%), Query Frame = 1

Query: 1   MATKERHRLPFARVCVEVSGDSMLPASVDVRIRCCDFTISIIYEWKPKRFSHCHSFGHCN 60
           +ATKER +L FARVCVE++ +S + A + V +R  DF +++ YEWKP++ +   +F HC+
Sbjct: 49  LATKERRKLSFARVCVELNVESPMLAEITVNLRRVDFIVTVNYEWKPRKCNLYRAFRHCS 108

Query: 61  GQCQKV 67
           G+C ++
Sbjct: 109 GKCPRI 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659114595|ref|XP_008457134.1|1.4e-1152.31PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo][more]
gi|659121150|ref|XP_008460523.1|5.4e-1146.15PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo][more]
gi|659126448|ref|XP_008463187.1|5.4e-1137.04PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo][more]
gi|659133524|ref|XP_008466769.1|2.7e-1047.69PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo][more]
gi|778697698|ref|XP_004142722.2|1.0e-0943.94PREDICTED: uncharacterized protein LOC101204295 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002036Cla002036.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None