Cla002026 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002026
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr8 : 10015974 .. 10016558 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGAGGGAAAGGGTCGCAAGCAGTTCCACAATTTGCTTTTGGAGATGAGCTTCTTCCCTGAGGAGGCGCCCCTATTAGCCTACATCATGGACATCATAGACCACCATGGCTGGCAAAACTTCTATGTCGATCCAACTATCATGCAGCTACCAGTCGTCCGTGCATTTTATGTGGGTCAGATTAATGACGAAGAAGACATGGTAACATTCCATGGATGTGAAGTCCCATTTAACGCAAGGGAGATCAATGCCATATTCCAGTTGAGGGATAACTCGAATATAGAGGGCAATCAGTTAGTTGCCTCAACGTTTCATGAATACATGCAAGATGCCATCTGGGTTATGGCCAAGTCAGGCTCAAAATGGGACGTTTCACCCGCAGGCATCAAGACACTGCCTTCCAACTACCTCTTGCCTGAGGCCAAATTGTGGGTGTATTTCGCAAAGAAGCGACTCATTCCCACCACCCACAACAAAACCGTTTCAAAAGATAAAGTGTTGACAGCTGATTACTTGTGGAAATACAAGTTATTGTATTCTTTATTTGGAGTAATTAGAGTAATATTGATGATAAACACATGA

mRNA sequence

ATGGACGAGGGAAAGGGTCGCAAGCAGTTCCACAATTTGCTTTTGGAGATGAGCTTCTTCCCTGAGGAGGCGCCCCTATTAGCCTACATCATGGACATCATAGACCACCATGGCTGGCAAAACTTCTATGTCGATCCAACTATCATGCAGCTACCAGTCGTCCGTGCATTTTATGTGGGTCAGATTAATGACGAAGAAGACATGGTAACATTCCATGGATGTGAAGTCCCATTTAACGCAAGGGAGATCAATGCCATATTCCAGTTGAGGGATAACTCGAATATAGAGGGCAATCAGTTAGTTGCCTCAACGTTTCATGAATACATGCAAGATGCCATCTGGGTTATGGCCAAGTCAGGCTCAAAATGGGACGTTTCACCCGCAGGCATCAAGACACTGCCTTCCAACTACCTCTTGCCTGAGGCCAAATTGTGGGTGTATTTCGCAAAGAAGCGACTCATTCCCACCACCCACAACAAAACCGTTTCAAAAGATAAAGTGTTGACAGCTGATTACTTGTGGAAATACAAGTTATTGTATTCTTTATTTGGAGTAATTAGAGTAATATTGATGATAAACACATGA

Coding sequence (CDS)

ATGGACGAGGGAAAGGGTCGCAAGCAGTTCCACAATTTGCTTTTGGAGATGAGCTTCTTCCCTGAGGAGGCGCCCCTATTAGCCTACATCATGGACATCATAGACCACCATGGCTGGCAAAACTTCTATGTCGATCCAACTATCATGCAGCTACCAGTCGTCCGTGCATTTTATGTGGGTCAGATTAATGACGAAGAAGACATGGTAACATTCCATGGATGTGAAGTCCCATTTAACGCAAGGGAGATCAATGCCATATTCCAGTTGAGGGATAACTCGAATATAGAGGGCAATCAGTTAGTTGCCTCAACGTTTCATGAATACATGCAAGATGCCATCTGGGTTATGGCCAAGTCAGGCTCAAAATGGGACGTTTCACCCGCAGGCATCAAGACACTGCCTTCCAACTACCTCTTGCCTGAGGCCAAATTGTGGGTGTATTTCGCAAAGAAGCGACTCATTCCCACCACCCACAACAAAACCGTTTCAAAAGATAAAGTGTTGACAGCTGATTACTTGTGGAAATACAAGTTATTGTATTCTTTATTTGGAGTAATTAGAGTAATATTGATGATAAACACATGA

Protein sequence

MDEGKGRKQFHNLLLEMSFFPEEAPLLAYIMDIIDHHGWQNFYVDPTIMQLPVVRAFYVGQINDEEDMVTFHGCEVPFNAREINAIFQLRDNSNIEGNQLVASTFHEYMQDAIWVMAKSGSKWDVSPAGIKTLPSNYLLPEAKLWVYFAKKRLIPTTHNKTVSKDKVLTADYLWKYKLLYSLFGVIRVILMINT

Homology

[Close]

BLAST of Cla002026 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.3e-16
Identity = 54/161 (33.54%), Postives = 83/161 (51.55%), Query Frame = 1


Query: 28  AYIMDIIDHHGWQNFYVDPTIMQLPVVRAFYVGQINDEEDMVTFHGCEVPFNAREINAIF 87
           A+I  +I  HGW+ F   P+   +P+VR FY   ++  ++ V     +VPF AR IN+IF
Sbjct: 5   AFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSIF 64

Query: 88  QLRDNSNIEGNQLVASTFHEYMQDAIWVMAKSGSKWDVSPAGIKTLPSNYLLPEAKLWVY 147
            L +  + E     +    E ++  +  +A  G+ W +SP G  T     L   A++W +
Sbjct: 65  GLEEVVD-EYVDFASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYH 124

Query: 148 FAKKRLIPTTHNKTVSKDKVLTADYLWKYKLLYSLFGVIRV 189
           F   R +P+TH KTV+KD+VL         LLYS+   I V
Sbjct: 125 FLTARFMPSTHGKTVAKDRVL---------LLYSILTGISV 155

[Close]

BLAST of Cla002026 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 46/160 (28.75%), Postives = 82/160 (51.25%), Query Frame = 1


Query: 12  NLLLEMSFFPEEAPLLA---YIMDIIDHHGWQNFYVDPTIMQLPVVRAFYVGQINDEEDM 71
           NL+ E  F   ++P L    +I D+I   GWQ F   P    +P+V+ FY    N  ++ 
Sbjct: 58  NLVKEKGFLLHDSPTLGQPGFISDVIISRGWQIFCRHPIDPIVPLVKEFYANLQNQGQNT 117

Query: 72  VTFHGCEVPFNAREINAIFQLRDNSNIEGNQLVASTFHEYMQDAIWVMAKSGSKWDVSPA 131
           V     ++ F +  IN +  +  N + E  +L+     E +++ +  +A  G++W +S  
Sbjct: 118 VFVWEIDITFTSNYINGVLGI-PNQDDEFVELITDAIEEQLKEVLKTIAILGAQWLLSAK 177

Query: 132 GIKTLPSNYLLPEAKLWVYFAKKRLIPTTHNKTVSKDKVL 169
           G  T   + L P AK+W +F   RL+ +TH KT+S+++ +
Sbjct: 178 GSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNRAI 216

[Close]

BLAST of Cla002026 vs. TrEMBL
Match: A0A061FAJ6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_032752 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.2e-10
Identity = 44/165 (26.67%), Postives = 79/165 (47.88%), Query Frame = 1


Query: 9   QFHNLLLEMSFFPE---EAPLLAY--IMDIIDHHGWQNFYVDPTIMQLPVVRAFYVGQIN 68
           +++  L+     PE   E P+L Y  I D+I    W  F   P ++ + VVR FY   + 
Sbjct: 27  RYYTSLINKVPIPERGIEIPILPYKEINDLIRDRYWHQFCHQPNVVVVLVVREFYATVVE 86

Query: 69  DEEDMVTFHGCEVPFNAREINAIFQLRDNSNIEGNQLVASTFHEYMQDAIWVMAKSGSKW 128
             + +    G  VPF+++ IN + +  +  N E  Q +    H+   + I  +   G++W
Sbjct: 87  HVDGVAFVRGKHVPFHSQAINELLRTPNIENDEYGQYLGD--HQDCNEIISTLCIEGAQW 146

Query: 129 DVSPAGIKTLPSNYLLPEAKLWVYFAKKRLIPTTHNKTVSKDKVL 169
             S     +   + +  E K+W++F   RL+P+TH   V+KD+ +
Sbjct: 147 KTSHGEPVSFKRSVMKKELKVWLHFVAARLLPSTHISDVTKDRAV 189

[Close]

BLAST of Cla002026 vs. TrEMBL
Match: W9RK06_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000483 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.9e-08
Identity = 36/141 (25.53%), Postives = 69/141 (48.94%), Query Frame = 1


Query: 28  AYIMDIIDHHGWQNFYVDPTIMQLPVVRAFYVGQINDEEDMVTFHGCEVPFNAREINAIF 87
           ++I  +I  H W +F  +P    + +VR +       E D +   G  +PF +  IN+++
Sbjct: 72  SFIHSVIAAHKWHSFCHNPHAATVQLVREYAA-----EPDTIFVRGQLIPFTSEAINSLY 131

Query: 88  QLRDNSNIEGNQLVASTFHEYMQDAIWVMAKSGSKWDVSPAGIKTLPSNYLLPEAKLWVY 147
            L D  +   N    S   + + + I  +   G++W  +  G  T P   L P +K+W +
Sbjct: 132 DLPDVED-HFNNFADSLNEDQLDEVINELCVEGTEWRRATRGSMTFPRECLQPGSKIWYH 191

Query: 148 FAKKRLIPTTHNKTVSKDKVL 169
           F + RL+P++H + V K++ +
Sbjct: 192 FLRFRLMPSSHYRLVHKERAI 206

[Close]

BLAST of Cla002026 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 92.0 bits (227), Expect = 1.2e-15
Identity = 54/161 (33.54%), Postives = 83/161 (51.55%), Query Frame = 1


Query: 28  AYIMDIIDHHGWQNFYVDPTIMQLPVVRAFYVGQINDEEDMVTFHGCEVPFNAREINAIF 87
           A+I  +I  HGW+ F   P+   +P+VR FY   ++  ++ V     +VPF AR IN+IF
Sbjct: 5   AFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSIF 64

Query: 88  QLRDNSNIEGNQLVASTFHEYMQDAIWVMAKSGSKWDVSPAGIKTLPSNYLLPEAKLWVY 147
            L +  + E     +    E ++  +  +A  G+ W +SP G  T     L   A++W +
Sbjct: 65  GLEEVVD-EYVDFASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYH 124

Query: 148 FAKKRLIPTTHNKTVSKDKVLTADYLWKYKLLYSLFGVIRV 189
           F   R +P+TH KTV+KD+VL         LLYS+   I V
Sbjct: 125 FLTARFMPSTHGKTVAKDRVL---------LLYSILTGISV 155

[Close]

BLAST of Cla002026 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-12
Identity = 46/160 (28.75%), Postives = 82/160 (51.25%), Query Frame = 1


Query: 12  NLLLEMSFFPEEAPLLA---YIMDIIDHHGWQNFYVDPTIMQLPVVRAFYVGQINDEEDM 71
           NL+ E  F   ++P L    +I D+I   GWQ F   P    +P+V+ FY    N  ++ 
Sbjct: 58  NLVKEKGFLLHDSPTLGQPGFISDVIISRGWQIFCRHPIDPIVPLVKEFYANLQNQGQNT 117

Query: 72  VTFHGCEVPFNAREINAIFQLRDNSNIEGNQLVASTFHEYMQDAIWVMAKSGSKWDVSPA 131
           V     ++ F +  IN +  +  N + E  +L+     E +++ +  +A  G++W +S  
Sbjct: 118 VFVWEIDITFTSNYINGVLGI-PNQDDEFVELITDAIEEQLKEVLKTIAILGAQWLLSAK 177

Query: 132 GIKTLPSNYLLPEAKLWVYFAKKRLIPTTHNKTVSKDKVL 169
           G  T   + L P AK+W +F   RL+ +TH KT+S+++ +
Sbjct: 178 GSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNRAI 216

[Close]

BLAST of Cla002026 vs. NCBI nr
Match: gi|590612524|ref|XP_007022408.1| (Uncharacterized protein TCM_032752 [Theobroma cacao])

HSP 1 Score: 72.8 bits (177), Expect = 7.5e-10
Identity = 44/165 (26.67%), Postives = 79/165 (47.88%), Query Frame = 1


Query: 9   QFHNLLLEMSFFPE---EAPLLAY--IMDIIDHHGWQNFYVDPTIMQLPVVRAFYVGQIN 68
           +++  L+     PE   E P+L Y  I D+I    W  F   P ++ + VVR FY   + 
Sbjct: 27  RYYTSLINKVPIPERGIEIPILPYKEINDLIRDRYWHQFCHQPNVVVVLVVREFYATVVE 86

Query: 69  DEEDMVTFHGCEVPFNAREINAIFQLRDNSNIEGNQLVASTFHEYMQDAIWVMAKSGSKW 128
             + +    G  VPF+++ IN + +  +  N E  Q +    H+   + I  +   G++W
Sbjct: 87  HVDGVAFVRGKHVPFHSQAINELLRTPNIENDEYGQYLGD--HQDCNEIISTLCIEGAQW 146

Query: 129 DVSPAGIKTLPSNYLLPEAKLWVYFAKKRLIPTTHNKTVSKDKVL 169
             S     +   + +  E K+W++F   RL+P+TH   V+KD+ +
Sbjct: 147 KTSHGEPVSFKRSVMKKELKVWLHFVAARLLPSTHISDVTKDRAV 189

[Close]

BLAST of Cla002026 vs. NCBI nr
Match: gi|703109223|ref|XP_010099236.1| (hypothetical protein L484_000483 [Morus notabilis])

HSP 1 Score: 66.2 bits (160), Expect = 7.0e-08
Identity = 36/141 (25.53%), Postives = 69/141 (48.94%), Query Frame = 1


Query: 28  AYIMDIIDHHGWQNFYVDPTIMQLPVVRAFYVGQINDEEDMVTFHGCEVPFNAREINAIF 87
           ++I  +I  H W +F  +P    + +VR +       E D +   G  +PF +  IN+++
Sbjct: 72  SFIHSVIAAHKWHSFCHNPHAATVQLVREYAA-----EPDTIFVRGQLIPFTSEAINSLY 131

Query: 88  QLRDNSNIEGNQLVASTFHEYMQDAIWVMAKSGSKWDVSPAGIKTLPSNYLLPEAKLWVY 147
            L D  +   N    S   + + + I  +   G++W  +  G  T P   L P +K+W +
Sbjct: 132 DLPDVED-HFNNFADSLNEDQLDEVINELCVEGTEWRRATRGSMTFPRECLQPGSKIWYH 191

Query: 148 FAKKRLIPTTHNKTVSKDKVL 169
           F + RL+P++H + V K++ +
Sbjct: 192 FLRFRLMPSSHYRLVHKERAI 206

The following BLAST results are available for this feature:

BLAST of Cla002026 vs. TrEMBL


Match Name	E-value	Identity	Description
W9QTD9_9ROSA	8.3e-16	33.54	Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1	[more]
W9RBS1_9ROSA	1.1e-12	28.75	Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1	[more]
A0A061FAJ6_THECC	5.2e-10	26.67	Uncharacterized protein OS=Theobroma cacao GN=TCM_032752 PE=4 SV=1	[more]
W9RK06_9ROSA	4.9e-08	25.53	Uncharacterized protein OS=Morus notabilis GN=L484_000483 PE=4 SV=1	[more]

BLAST of Cla002026 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703087370\|ref\|XP_010093253.1\|	1.2e-15	33.54	hypothetical protein L484_022412 [Morus notabilis]	[more]
gi\|703082781\|ref\|XP_010092041.1\|	1.6e-12	28.75	hypothetical protein L484_000844 [Morus notabilis]	[more]
gi\|590612524\|ref\|XP_007022408.1\|	7.5e-10	26.67	Uncharacterized protein TCM_032752 [Theobroma cacao]	[more]
gi\|703109223\|ref\|XP_010099236.1\|	7.0e-08	25.53	hypothetical protein L484_000483 [Morus notabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002026	Cla002026.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002026	Cucumber (Chinese Long) v3	cucwmB491
Cla002026	Watermelon (97103) v2	wmwmbB105
Cla002026	Cucumber (Gy14) v1	cgywmB661
Cla002026	Wild cucumber (PI 183967)	cpiwmB480
Cla002026	Watermelon (Charleston Gray)	wcgwmB410
Cla002026	Cucumber (Chinese Long) v2	cuwmB463
Cla002026	Cucumber (Gy14) v2	cgybwmB436
Cla002026	Melon (DHL92) v3.6.1	medwmB306