Cla002003 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002003
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Galactose-binding like (AHRD V1 -- A2Q295_MEDTR)
Location	Chr1 : 21597109 .. 21597560 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCTGGGTGGTCGGAAGANAAAGAAAGGGGTTCGGGGGGGACGAAAGAGCGGGCCGCACGGCCGCCGCAGCAGCCAGCTACGGTTGGCGCAGCCATAAGAAACAACGAGCATAGCAGCGGCAACTCGAGTAATAATAATTTAAAGGAAGAAAAAGAGAAGGTGGTGAAAGGGAAATTAGGAGAAGAAGTGAAGCTTGGCCATGGGTTTGAAGCTATTTTGAAAGATGCAGATTTGCCAGTGGATAGGTCTTCCTTGGATAAGCTCTATGATCAACTCTATGCGGGGATCTTCTTGAACAAACGAACTAAGGCAAGTGTAACACTAGAAATGATATTTACTTTTACAAGTATTATAATGAAATTTGAATGTTTTTGCTATTTGAAAAGAAAAATACTTTGGATATATTTAAGGCTGCGTTCATCCTTGACCAACTAATTCATATGTGA

mRNA sequence

ATGGGATCTGGGTGGTCGGAAGANAAAGAAAGGGGTTCGGGGGGGACGAAAGAGCGGGCCGCACGGCCGCCGCAGCAGCCAGCTACGGTTGGCGCAGCCATAAGAAACAACGAGCATAGCAGCGGCAACTCGAGTAATAATAATTTAAAGGAAGAAAAAGAGAAGGTGGTGAAAGGGAAATTAGGAGAAGAAGTGAAGCTTGGCCATGGGTTTGAAGCTATTTTGAAAGATGCAGATTTGCCAGTGGATAGGTCTTCCTTGGATAAGCTCTATGATCAACTCTATGCGGGGATCTTCTTGAACAAACGAACTAAGGCAAGTGCTGCGTTCATCCTTGACCAACTAATTCATATGTGA

Coding sequence (CDS)

ATGGGATCTGGGTGGTCGGAAGANAAAGAAAGGGGTTCGGGGGGGACGAAAGAGCGGGCCGCACGGCCGCCGCAGCAGCCAGCTACGGTTGGCGCAGCCATAAGAAACAACGAGCATAGCAGCGGCAACTCGAGTAATAATAATTTAAAGGAAGAAAAAGAGAAGGTGGTGAAAGGGAAATTAGGAGAAGAAGTGAAGCTTGGCCATGGGTTTGAAGCTATTTTGAAAGATGCAGATTTGCCAGTGGATAGGTCTTCCTTGGATAAGCTCTATGATCAACTCTATGCGGGGATCTTCTTGAACAAACGAACTAAGGCAAGTGCTGCGTTCATCCTTGACCAACTAATTCATATGTGA

Protein sequence

MGSGWSEXKERGSGGTKERAARPPQQPATVGAAIRNNEHSSGNSSNNNLKEEKEKVVKGKLGEEVKLGHGFEAILKDADLPVDRSSLDKLYDQLYAGIFLNKRTKASAAFILDQLIHM

Homology

[Close]

BLAST of Cla002003 vs. TrEMBL
Match: A0A0A0LYN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G703070 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-33
Identity = 75/105 (71.43%), Postives = 83/105 (79.05%), Query Frame = 1


Query: 1   MGSGWSEXKERGSGGTKERAARPPQQPATVGAAIRNNEHSSGNSSNNNLKEEKEKVVKGK 60
           MG GWSE          E+AA+P  QPA   AA+R+N+H  GNSSNNNLKEEKEK VKGK
Sbjct: 1   MGLGWSE----------EQAAQPQPQPAAANAAVRSNKHRGGNSSNNNLKEEKEKEVKGK 60

Query: 61  LGEEVKLGHGFEAILKDADLPVDRSSLDKLYDQLYAGIFLNKRTK 106
           LGEE+K+GHG E ILKDADLPVDRSSLDKLY+QLY GIFLNKRTK
Sbjct: 61  LGEEMKVGHGIEDILKDADLPVDRSSLDKLYEQLYVGIFLNKRTK 95

[Close]

BLAST of Cla002003 vs. TrEMBL
Match: A0A067GCI5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025108mg PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.1e-10
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 1


Query: 12  GSGGTKERAARPPQQPATVGAAIRNNEHSSGNSSNN---------NLKEEKEKVVKGKLG 71
           G+G +KE ++          + ++ NE  S N S N         N KE K    K    
Sbjct: 2   GTGSSKEDSS----------SQLQPNEKPSQNESQNFAIAAKPADNTKETKVCEAKEA-- 61

Query: 72  EEVKLGHGFEAILKDADLPVDRSSLDKLYDQLYAGIFLNKRTKAS 108
            EVKL H +EAI+KDAD P+D+SS+DKLYDQLY G+FLN+++K S
Sbjct: 62  -EVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSKKS 93

[Close]

BLAST of Cla002003 vs. TrEMBL
Match: A0A067GCT8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025108mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 1


Query: 12  GSGGTKERAARPPQQPATVGAAIRNNEHSSGNSSNN---------NLKEEKEKVVKGKLG 71
           G+G +KE ++          + ++ NE  S N S N         N KE K    K    
Sbjct: 2   GTGSSKEDSS----------SQLQPNEKPSQNESQNFAIAAKPADNTKETKVCEAKEA-- 61

Query: 72  EEVKLGHGFEAILKDADLPVDRSSLDKLYDQLYAGIFLNKRTK 106
            EVKL H +EAI+KDAD P+D+SS+DKLYDQLY G+FLN+++K
Sbjct: 62  -EVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSK 91

[Close]

BLAST of Cla002003 vs. TrEMBL
Match: V4TN87_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016359mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.6e-09
Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 1


Query: 12  GSGGTKERAA---RPPQQPATVGAAIRNNEHSSGNSSNNNLKEEKEKVVKGKLGEEVKLG 71
           G+G +KE ++   +P ++P+        NE  +   +       +E  V+     E+KL 
Sbjct: 2   GTGSSKEDSSSQLQPSEKPS-------QNESQNFAIAAKPADNTRETQVREAKEAELKLP 61

Query: 72  HGFEAILKDADLPVDRSSLDKLYDQLYAGIFLNKRTK 106
           H +EAI+KDAD P+D+SS+DKLYDQLY G+FLN+++K
Sbjct: 62  HMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSK 91

[Close]

BLAST of Cla002003 vs. TrEMBL
Match: A0A068US52_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033342001 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 43/107 (40.19%), Postives = 55/107 (51.40%), Query Frame = 1


Query: 1   MGSGWSEXKERGSGGTKERAARPPQQPATVGAAIRNNEHSSGNSSNNNLKEEKEKVVKGK 60
           MG+ WS+  E      + R   PP  P      I NNE  +   +               
Sbjct: 1   MGAEWSQD-EVSQPTEEHRKETPPCTPQ-----INNNESGAIQET--------------- 60

Query: 61  LGEEVKLGHGFEAILKDADLPVDRSSLDKLYDQLYAGIFLNKRTKAS 108
              E+KL H  + ILKDAD PVD+SS +KLYDQLYAG+FLN++ KAS
Sbjct: 61  -ATELKLPHNHDEILKDADAPVDKSSTEKLYDQLYAGVFLNQKKKAS 85

[Close]

BLAST of Cla002003 vs. NCBI nr
Match: gi|449455417|ref|XP_004145449.1| (PREDICTED: protein PHLOEM PROTEIN 2-LIKE A1 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 6.5e-33
Identity = 75/105 (71.43%), Postives = 83/105 (79.05%), Query Frame = 1


Query: 1   MGSGWSEXKERGSGGTKERAARPPQQPATVGAAIRNNEHSSGNSSNNNLKEEKEKVVKGK 60
           MG GWSE          E+AA+P  QPA   AA+R+N+H  GNSSNNNLKEEKEK VKGK
Sbjct: 1   MGLGWSE----------EQAAQPQPQPAAANAAVRSNKHRGGNSSNNNLKEEKEKEVKGK 60

Query: 61  LGEEVKLGHGFEAILKDADLPVDRSSLDKLYDQLYAGIFLNKRTK 106
           LGEE+K+GHG E ILKDADLPVDRSSLDKLY+QLY GIFLNKRTK
Sbjct: 61  LGEEMKVGHGIEDILKDADLPVDRSSLDKLYEQLYVGIFLNKRTK 95

[Close]

BLAST of Cla002003 vs. NCBI nr
Match: gi|659131142|ref|XP_008465530.1| (PREDICTED: protein PHLOEM PROTEIN 2-LIKE A1-like [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-32
Identity = 78/107 (72.90%), Postives = 87/107 (81.31%), Query Frame = 1


Query: 1   MGSGWSEXKERGSGGTKERAARPP--QQPATVGAAIRNNEHSSGNSSNNNLKEEKEKVVK 60
           MGSGWSE          E+AA+P   QQPA   AA+R+NEHSSGNSS+NNLKEEKEKVVK
Sbjct: 1   MGSGWSE----------EQAAQPQPQQQPAAANAAVRSNEHSSGNSSDNNLKEEKEKVVK 60

Query: 61  GKLGEEVKLGHGFEAILKDADLPVDRSSLDKLYDQLYAGIFLNKRTK 106
           GKL EE+KLGHGFE ILK ADLPVDRSSL+KL++QLY GIFLNKRTK
Sbjct: 61  GKLEEEMKLGHGFEDILKYADLPVDRSSLEKLHEQLYVGIFLNKRTK 97

[Close]

BLAST of Cla002003 vs. NCBI nr
Match: gi|641858686|gb|KDO77408.1| (hypothetical protein CISIN_1g025108mg [Citrus sinensis])

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-09
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 1


Query: 12  GSGGTKERAARPPQQPATVGAAIRNNEHSSGNSSNN---------NLKEEKEKVVKGKLG 71
           G+G +KE ++          + ++ NE  S N S N         N KE K    K    
Sbjct: 2   GTGSSKEDSS----------SQLQPNEKPSQNESQNFAIAAKPADNTKETKVCEAKEA-- 61

Query: 72  EEVKLGHGFEAILKDADLPVDRSSLDKLYDQLYAGIFLNKRTKAS 108
            EVKL H +EAI+KDAD P+D+SS+DKLYDQLY G+FLN+++K S
Sbjct: 62  -EVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSKKS 93

[Close]

BLAST of Cla002003 vs. NCBI nr
Match: gi|568828248|ref|XP_006468456.1| (PREDICTED: protein PHLOEM PROTEIN 2-LIKE A1 [Citrus sinensis])

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-09
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 1


Query: 12  GSGGTKERAARPPQQPATVGAAIRNNEHSSGNSSNN---------NLKEEKEKVVKGKLG 71
           G+G +KE ++          + ++ NE  S N S N         N KE K    K    
Sbjct: 2   GTGSSKEDSS----------SQLQPNEKPSQNESQNFAIAAKPADNTKETKVCEAKEA-- 61

Query: 72  EEVKLGHGFEAILKDADLPVDRSSLDKLYDQLYAGIFLNKRTK 106
            EVKL H +EAI+KDAD P+D+SS+DKLYDQLY G+FLN+++K
Sbjct: 62  -EVKLPHMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSK 91

[Close]

BLAST of Cla002003 vs. NCBI nr
Match: gi|567912819|ref|XP_006448723.1| (hypothetical protein CICLE_v10016359mg [Citrus clementina])

HSP 1 Score: 68.9 bits (167), Expect = 6.6e-09
Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 1


Query: 12  GSGGTKERAA---RPPQQPATVGAAIRNNEHSSGNSSNNNLKEEKEKVVKGKLGEEVKLG 71
           G+G +KE ++   +P ++P+        NE  +   +       +E  V+     E+KL 
Sbjct: 2   GTGSSKEDSSSQLQPSEKPS-------QNESQNFAIAAKPADNTRETQVREAKEAELKLP 61

Query: 72  HGFEAILKDADLPVDRSSLDKLYDQLYAGIFLNKRTK 106
           H +EAI+KDAD P+D+SS+DKLYDQLY G+FLN+++K
Sbjct: 62  HMYEAIVKDADSPIDKSSVDKLYDQLYYGVFLNQKSK 91

The following BLAST results are available for this feature:

BLAST of Cla002003 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYN2_CUCSA	4.6e-33	71.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G703070 PE=4 SV=1	[more]
A0A067GCI5_CITSI	7.1e-10	42.86	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025108mg PE=4 SV=1	[more]
A0A067GCT8_CITSI	1.6e-09	42.72	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025108mg PE=4 SV=1	[more]
V4TN87_9ROSI	4.6e-09	39.18	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016359mg PE=4 SV=1	[more]
A0A068US52_COFCA	1.3e-08	40.19	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033342001 PE=4 SV=1	[more]

BLAST of Cla002003 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455417\|ref\|XP_004145449.1\|	6.5e-33	71.43	PREDICTED: protein PHLOEM PROTEIN 2-LIKE A1 [Cucumis sativus]	[more]
gi\|659131142\|ref\|XP_008465530.1\|	1.9e-32	72.90	PREDICTED: protein PHLOEM PROTEIN 2-LIKE A1-like [Cucumis melo]	[more]
gi\|641858686\|gb\|KDO77408.1\|	1.0e-09	42.86	hypothetical protein CISIN_1g025108mg [Citrus sinensis]	[more]
gi\|568828248\|ref\|XP_006468456.1\|	2.3e-09	42.72	PREDICTED: protein PHLOEM PROTEIN 2-LIKE A1 [Citrus sinensis]	[more]
gi\|567912819\|ref\|XP_006448723.1\|	6.6e-09	39.18	hypothetical protein CICLE_v10016359mg [Citrus clementina]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU32284	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU44734	watermelon EST collection version 2.0	transcribed_cluster
WMU75145	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002003	Cla002003.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU75145	WMU75145	transcribed_cluster
WMU44734	WMU44734	transcribed_cluster
WMU32284	WMU32284	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002003	Cucurbita pepo (Zucchini)	cpewmB521
Cla002003	Watermelon (97103) v2	wmwmbB239
Cla002003	Cucurbita maxima (Rimu)	cmawmB197
Cla002003	Cucurbita moschata (Rifu)	cmowmB184