Cla001989 (gene) Watermelon (97103) v1

Overview
NameCla001989
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr9 : 26162498 .. 26162845 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAATTACACTACATGTACGATATACCTATTGCACCTCCACTAGTTCTTAGGCATAAGGGACGTGCTCGAGTAGAAGAAGATGAGTTTGATGCAGTTGACCATAATGTGGAAGAATTGCCTCCTATGACGCAGACGCAAACACAGAGCCAGACTGGTTATGCTAGTCCGATGATGATGCAACCAACTTCTGATTTAGGATATTATGATTCAAAGACTGGCCATCGTCTTCATACATGCATACACATGGGCGCAGTCGTAGAGAACATAAAGAATATCTATACTATGAAGCGCCTGCAGAGGTACCACAACAACCAGATCATCAAAGCAATCAGAGCAACCTAG

mRNA sequence

ATGGAGGAATTACACTACATGTACGATATACCTATTGCACCTCCACTAGTTCTTAGGCATAAGGGACGTGCTCGAGTAGAAGAAGATGAGTTTGATGCAGTTGACCATAATGTGGAAGAATTGCCTCCTATGACGCAGACGCAAACACAGAGCCAGACTGGTTATGCTAGTCCGATGATGATGCAACCAACTTCTGATTTAGGATATTATGATTCAAAGACTGGCCATCGTCTTCATACATGCATACACATGGGCGCAGTCGTAGAGAACATAAAGAATATCTATACTATGAAGCGCCTGCAGAGGTACCACAACAACCAGATCATCAAAGCAATCAGAGCAACCTAG

Coding sequence (CDS)

ATGGAGGAATTACACTACATGTACGATATACCTATTGCACCTCCACTAGTTCTTAGGCATAAGGGACGTGCTCGAGTAGAAGAAGATGAGTTTGATGCAGTTGACCATAATGTGGAAGAATTGCCTCCTATGACGCAGACGCAAACACAGAGCCAGACTGGTTATGCTAGTCCGATGATGATGCAACCAACTTCTGATTTAGGATATTATGATTCAAAGACTGGCCATCGTCTTCATACATGCATACACATGGGCGCAGTCGTAGAGAACATAAAGAATATCTATACTATGAAGCGCCTGCAGAGGTACCACAACAACCAGATCATCAAAGCAATCAGAGCAACCTAG

Protein sequence

MEELHYMYDIPIAPPLVLRHKGRARVEEDEFDAVDHNVEELPPMTQTQTQSQTGYASPMMMQPTSDLGYYDSKTGHRLHTCIHMGAVVENIKNIYTMKRLQRYHNNQIIKAIRAT
Homology
[Close]
BLAST of Cla001989 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 1 

Query: 1   MEELHYMYDIPIAPPLVLRHKGRARVEEDEFDAVDHNVEELPPMTQTQTQSQTGYASPMM 60
           ME +HYMYD+PI P  V R +   + E D+ + VD + EE+PPMTQTQTQS+  Y SP+M
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQ-ESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVM 136

Query: 61  MQPTSDLGYYDSKTG 76
           M PT  + YYDS  G
Sbjct: 137 MMPTFGMTYYDSGVG 150

The following BLAST results are available for this feature:
BLAST of Cla001989 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|1.1e-1353.33PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU45820watermelon EST collection version 2.0transcribed_cluster
WMU60278watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001989Cla001989.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU60278WMU60278transcribed_cluster
WMU45820WMU45820transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001989Watermelon (97103) v2wmwmbB045
Cla001989Wax gourdwgowmB246
Cla001989Wax gourdwgowmB257
Cla001989Cucurbita maxima (Rimu)cmawmB080
Cla001989Watermelon (Charleston Gray)wcgwmB012
Cla001989Bottle gourd (USVL1VR-Ls)lsiwmB229