Cla001967 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001967
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr9 : 25703373 .. 25703738 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCGTTATCAACATGGTCGGCCTTTGTCATTGAAGGTTTTGGAGGGTGGCTCTCGATCAAAAATCTTCCTTTAGATTATTGGAGTAGAAAAACTTTTGAGGCTATTGGAGCTTACTTTGGAGGTCTTGAGGATATTGCTTTGGAAACTTCGAATTTTCTCAATTGCTCGGTAGCTAAGATTCAAGTTAAGAAGAATTTGTGTGGGTTTATGCCTTCTACCATTAAAATCACCGACGTTAATCGTGGCAATATCTTTTTAGAATTTGGTGATATAGAAGCTCTTGAAGCCCCAGAAATGACGCACGGTGAATTGTTAATTAAGAATTTCGATAATCCTTTAGATTTAGTTCGTTTGCGATAG

mRNA sequence

ATGGAACCGTTATCAACATGGTCGGCCTTTGTCATTGAAGGTTTTGGAGGGTGGCTCTCGATCAAAAATCTTCCTTTAGATTATTGGAGTAGAAAAACTTTTGAGGCTATTGGAGCTTACTTTGGAGGTCTTGAGGATATTGCTTTGGAAACTTCGAATTTTCTCAATTGCTCGGTAGCTAAGATTCAAGTTAAGAAGAATTTGTGTGGGTTTATGCCTTCTACCATTAAAATCACCGACGTTAATCGTGGCAATATCTTTTTAGAATTTGGTGATATAGAAGCTCTTGAAGCCCCAGAAATGACGCACGGTGAATTGTTAATTAAGAATTTCGATAATCCTTTAGATTTAGTTCGTTTGCGATAG

Coding sequence (CDS)

ATGGAACCGTTATCAACATGGTCGGCCTTTGTCATTGAAGGTTTTGGAGGGTGGCTCTCGATCAAAAATCTTCCTTTAGATTATTGGAGTAGAAAAACTTTTGAGGCTATTGGAGCTTACTTTGGAGGTCTTGAGGATATTGCTTTGGAAACTTCGAATTTTCTCAATTGCTCGGTAGCTAAGATTCAAGTTAAGAAGAATTTGTGTGGGTTTATGCCTTCTACCATTAAAATCACCGACGTTAATCGTGGCAATATCTTTTTAGAATTTGGTGATATAGAAGCTCTTGAAGCCCCAGAAATGACGCACGGTGAATTGTTAATTAAGAATTTCGATAATCCTTTAGATTTAGTTCGTTTGCGATAG

Protein sequence

MEPLSTWSAFVIEGFGGWLSIKNLPLDYWSRKTFEAIGAYFGGLEDIALETSNFLNCSVAKIQVKKNLCGFMPSTIKITDVNRGNIFLEFGDIEALEAPEMTHGELLIKNFDNPLDLVRLR

Homology

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BLAST of Cla001967 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08
Identity = 36/98 (36.73%), Postives = 55/98 (56.12%), Query Frame = 1


Query: 3   PLSTWSAFVIEGFGGWLSIKNLPLDYWSRKTFEAIGAYFGGLEDIALETSNFLNCSVAKI 62
           P+   +  +I  +GGW   + +PL  W+ KTF+ IG   GGL  +A ET +  N   AKI
Sbjct: 275 PIQHATPKLIPSYGGWTIFRGIPLHLWNMKTFQQIGKACGGLIKVAEETRSAKNLIEAKI 334

Query: 63  QVKKNLCGFMPSTIKITDVNRGNIFLEFGDIEALEAPE 101
           +++ N  GF+P+ ++I D N GN F     I+ +  PE
Sbjct: 335 KIRYNYSGFLPANVRIFD-NEGNKF----SIQVVTHPE 367

The following BLAST results are available for this feature:

BLAST of Cla001967 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071590\|ref\|XP_008460776.1\|	2.0e-08	36.73	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025558	DUF4283

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001967	Cla001967.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 18..64 score: 6.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001967	Bhi05G000538	Wax gourd	wgowmB257

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001967	Watermelon (97103) v2	wmwmbB045
Cla001967	Wax gourd	wgowmB246
Cla001967	Cucurbita maxima (Rimu)	cmawmB080
Cla001967	Watermelon (Charleston Gray)	wcgwmB012
Cla001967	Bottle gourd (USVL1VR-Ls)	lsiwmB229