Cla001958 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001958
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Retrotransposon protein (AHRD V1 -- E5GCB5_CUCME)
Location	Chr8 : 13006912 .. 13007675 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCACCCGGATCACGCGCAAGAGCTTCAAAACATATTTGGATGGATGAAGAGAACAGAATCCTGGTGGAGTGTTTGGTTCTGTGTGTGCAGTCTGGACACTGGCGAGTTGATAACGGAACTTTTCAACCTGGATTCCTAGCAAATGTACTACGGATGTTGCAGCAAAGGGTTCCAGGGAGTTCCATACAAGTAAGCCCAAATTTGGAGTCCAAGGTCAGGACGTTGAAGAGAAACTACAGCGCGATTGCTAAATGTTGGGCTCAGGATCTAGTGGGTTTGGTTCGAATGTAGAGCGCAAATGTATTGACTGTGAGCCGGAGATATTTGACGCATGGGTCAAGGTAATTTTATTATTTTTCTATTTATTCTAGGTTGTTTTAAATATGTTTTAGCCATTACATAACACATTTAATCTTTAACAGAGTCATCCGAGTGCAAAAGGACTGCGCCATAAGTCATTTTCGTTTTATGATGACTTGGCCATTGTATTTGGCAAAGACAGAGCAACAGGGAGTCGTGCCACTACCACTGCAGAGGTTGGATCCGAACCTTTTGTGGAAGAGGAGAGCGAGGACATTTTGAATAACCAGTCACCAGACTTTGAGAACTTCTATATTTCTGATCTACCATTCGCCAGCTTGCCCACATCAGAGGATTTTCCAACTACCCGCAGCAGTAGAAGGTCTGGGAGTAGCATGTCAACAAGAAGTAGGAGGTCCCGAAGTTCCTCAATTGGAGAGTATAGCGAGGTGGTTTGA

mRNA sequence

ATGGAAGCACCCGGATCACGCGCAAGAGCTTCAAAACATATTTGGATGGATGAAGAGAACAGAATCCTGGTGGAGTGTTTGGTTCTGTGTGTGCAGTCTGGACACTGGCGAGTTGATAACGGAACTTTTCAACCTGGATTCCTAGCAAATGTACTACGGATGTTGCAGCAAAGGGTTCCAGGGAGTTCCATACAAGTAAGCCCAAATTTGGAGTCCAAGGTCAGGACGTTGAAGAGAAACTACAGCGCGATTGCTAAATGTTGGGCTCAGGATCTAGTGGAGGTTGGATCCGAACCTTTTGTGGAAGAGGAGAGCGAGGACATTTTGAATAACCAGTCACCAGACTTTGAGAACTTCTATATTTCTGATCTACCATTCGCCAGCTTGCCCACATCAGAGGATTTTCCAACTACCCGCAGCAGTAGAAGGTCTGGGAGTAGCATGTCAACAAGAAGTAGGAGGTCCCGAAGTTCCTCAATTGGAGAGTATAGCGAGGTGGTTTGA

Coding sequence (CDS)

ATGGAAGCACCCGGATCACGCGCAAGAGCTTCAAAACATATTTGGATGGATGAAGAGAACAGAATCCTGGTGGAGTGTTTGGTTCTGTGTGTGCAGTCTGGACACTGGCGAGTTGATAACGGAACTTTTCAACCTGGATTCCTAGCAAATGTACTACGGATGTTGCAGCAAAGGGTTCCAGGGAGTTCCATACAAGTAAGCCCAAATTTGGAGTCCAAGGTCAGGACGTTGAAGAGAAACTACAGCGCGATTGCTAAATGTTGGGCTCAGGATCTAGTGGAGGTTGGATCCGAACCTTTTGTGGAAGAGGAGAGCGAGGACATTTTGAATAACCAGTCACCAGACTTTGAGAACTTCTATATTTCTGATCTACCATTCGCCAGCTTGCCCACATCAGAGGATTTTCCAACTACCCGCAGCAGTAGAAGGTCTGGGAGTAGCATGTCAACAAGAAGTAGGAGGTCCCGAAGTTCCTCAATTGGAGAGTATAGCGAGGTGGTTTGA

Protein sequence

MEAPGSRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAKCWAQDLVEVGSEPFVEEESEDILNNQSPDFENFYISDLPFASLPTSEDFPTTRSSRRSGSSMSTRSRRSRSSSIGEYSEVV

Homology

[Close]

BLAST of Cla001958 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.8e-12
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 1


Query: 6   SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQ 65
           S +R  KH W  EE   LVECLV  V +G WR DNGTF+PG+L  + RM+  ++PGS+I 
Sbjct: 358 SSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIH 417

Query: 66  VSPNLESKVRTLKRNYSAIAK 87
            S  ++S+++ +KR + A+A+
Sbjct: 418 AS-TIDSRIKLMKRMFHALAE 437

[Close]

BLAST of Cla001958 vs. TrEMBL
Match: A0A0A0KNB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G420360 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-09
Identity = 31/81 (38.27%), Postives = 53/81 (65.43%), Query Frame = 1


Query: 6  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQ 65
          + ++A+KH W               ++ G WR  NGTF+PG+L  V +++++++PGS+IQ
Sbjct: 4  TNSKATKHRWTT-------------IEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQ 63

Query: 66 VSPNLESKVRTLKRNYSAIAK 87
          V+PNLE +V+ LK+ Y+AI +
Sbjct: 64 VTPNLEPRVKILKKQYTAIVE 71

[Close]

BLAST of Cla001958 vs. TrEMBL
Match: A5BN29_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003991 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.0e-09
Identity = 33/74 (44.59%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 11 SKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNL 70
          +K +W  +E+  L+E LV    SG  + DNG F+PG  A V R+L+ ++PG  ++ SP++
Sbjct: 15 NKRVWTPKEDAKLIESLVELCVSGKMKCDNG-FRPGTFAQVERLLEDKLPGCGLKASPHI 74

Query: 71 ESKVRTLKRNYSAI 85
          ES+V+TLKR Y+AI
Sbjct: 75 ESRVKTLKRQYNAI 87

[Close]

BLAST of Cla001958 vs. TrEMBL
Match: D7SWE9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g02450 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.0e-09
Identity = 33/74 (44.59%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 11 SKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNL 70
          +K +W  +E+  L+E LV    SG  + DNG F+PG  A V R+L+ ++PG  ++ SP++
Sbjct: 15 NKRVWTPKEDAKLIESLVELCVSGKMKCDNG-FRPGTFAQVERLLEDKLPGCGLKASPHI 74

Query: 71 ESKVRTLKRNYSAI 85
          ES+V+TLKR Y+AI
Sbjct: 75 ESRVKTLKRQYNAI 87

[Close]

BLAST of Cla001958 vs. TrEMBL
Match: E5GBS5_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.5e-09
Identity = 50/172 (29.07%), Postives = 85/172 (49.42%), Query Frame = 1


Query: 6   SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQ 65
           S +R  KH+W+ E++  LVECLV  V S  W  DNGTF  G+ + + RM+ Q++ G +IQ
Sbjct: 3   SSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPNIQ 62

Query: 66  VSPNLESKVRTLKRNYSAIAK---------CWAQDLVEVGSEPFVEEESEDILNNQSPDF 125
            +  ++S ++T+++ + AI++          W  +L  +  E  V +     L N SPD 
Sbjct: 63  AT-TIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGL-NMSPD- 122

Query: 126 ENFYISDLPFASLPTSEDFPTTRSSRR-SGSSMSTRSRRSRSSSIGEYSEVV 168
                            +F  +R  R   G + S+RS+R R   + E + ++
Sbjct: 123 -----------------EFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANII 154

[Close]

BLAST of Cla001958 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 2.3e-15
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 6  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQ 65
          S +RA KH W  EE    VECLV  V SG WR DNGTFQPG+LA + RM+ +++PG++IQ
Sbjct: 3  SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62

Query: 66 VSPNLESKVRTLKRNYSAIAK 87
           S  ++  V++LK+ Y AIA+
Sbjct: 63 ESSTIDCHVKSLKKTYHAIAE 83

[Close]

BLAST of Cla001958 vs. NCBI nr
Match: gi|659111294|ref|XP_008455678.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 36/81 (44.44%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 6   SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQ 65
           + ++A+KH W   ++  LVECL+  V+ G WR +N TF+P +L  V +++++++P S+IQ
Sbjct: 36  TNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSNIQ 95

Query: 66  VSPNLESKVRTLKRNYSAIAK 87
           V+ NLES+V+ LK+ Y+AIAK
Sbjct: 96  VTLNLESRVKFLKKQYTAIAK 116

[Close]

BLAST of Cla001958 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 79.3 bits (194), Expect = 6.9e-12
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 1


Query: 6   SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQ 65
           S +R  KH W  EE   LVECLV  V +G WR DNGTF+PG+L  + RM+  ++PGS+I 
Sbjct: 358 SSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIH 417

Query: 66  VSPNLESKVRTLKRNYSAIAK 87
            S  ++S+++ +KR + A+A+
Sbjct: 418 AS-TIDSRIKLMKRMFHALAE 437

[Close]

BLAST of Cla001958 vs. NCBI nr
Match: gi|659118456|ref|XP_008459129.1| (PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-11
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 2   EAPGSRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPG 61
           E   S +R  KH W  EE   LVECLV  V +G WR DNGTF+P +L  + RM+  ++PG
Sbjct: 200 ECMASSSRLPKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPRYLNQLARMMAFKIPG 259

Query: 62  SSIQVSPNLESKVRTLKRNYSAIAK 87
           S++  S  ++S+++ LKR + AIA+
Sbjct: 260 SNVHAS-TIDSRIKLLKRMFHAIAE 283

[Close]

BLAST of Cla001958 vs. NCBI nr
Match: gi|659133698|ref|XP_008466863.1| (PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 2.6e-11
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 1


Query: 6   SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQ 65
           S +R  KH W  EE   LVECLV  V +G WR DNGTF+PG+L  + RM+  ++PG +I 
Sbjct: 211 SSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCNIH 270

Query: 66  VSPNLESKVRTLKRNYSAIAK 87
            S  ++S+++ +KR + A+A+
Sbjct: 271 AS-TIDSRIKLMKRMFHALAE 290

The following BLAST results are available for this feature:

BLAST of Cla001958 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB5_CUCME	4.8e-12	45.68	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KNB4_CUCSA	1.0e-09	38.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G420360 PE=4 SV=1	[more]
A5BN29_VITVI	5.0e-09	44.59	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003991 PE=4 SV=1	[more]
D7SWE9_VITVI	5.0e-09	44.59	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g02450 PE=4 SV=...	[more]
E5GBS5_CUCME	6.5e-09	29.07	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla001958 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082641\|ref\|XP_008441954.1\|	2.3e-15	51.85	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|659111294\|ref\|XP_008455678.1\|	1.1e-12	44.44	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|307136287\|gb\|ADN34114.1\|	6.9e-12	45.68	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659118456\|ref\|XP_008459129.1\|	2.0e-11	44.71	PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo]	[more]
gi\|659133698\|ref\|XP_008466863.1\|	2.6e-11	44.44	PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001958	Cla001958.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001958	Melon (DHL92) v3.5.1	mewmB305
Cla001958	Watermelon (Charleston Gray)	wcgwmB405