Cla001904 (gene) Watermelon (97103) v1

Overview
NameCla001904
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSurvival of motor neuron-related-splicing factor 30 (AHRD V1 *-*- F4IR82_ARATH)
LocationChr11 : 26680345 .. 26681872 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGGAGGAGAAGATGTAAGCATTGAAGAGTTGGCTAATAATCTCTCTACCTACAAGGACCAGCTTCAGCAGGTACTCCTCTTCTCCATTTCTTTCTGGTTAATAATCCCTTCATTTTTTTATAATGATTTTGTTTCAGTTACTGGGGTTCTCTTTCTTCACATTTATTCAAAGCAAAATTGGATATTTATGATCTTGTAAACCTTTGCCGCTGTCATTCCTGAGTTCTTCCTAGTGGTTTGTATCTGAATTAGGGGTTTGCCCACCACCTTCGACTGCTCCGGTGCTAAGTTGCAGCGAATCCGGAGGAAATGAAACCTGTATTGGATAATTGCATCAAACCTAGAAATTTAGAACTCAATCCACATAAATCAGTATCAAGATTCTTTGGACTTTCCAGTTTCATGAGGGTTTATCTGTCCTGGTTCTTTATTATAACATTTTTTTTTTTTTTTTTTTTTACTTAGGATACTGAAAATCTTGACCAGGGTTTAAGCATCTGAATGATTTTTACATTTGTATGGTGAATTCTTAATTATCAGTCAGTCACTTCCTGCACCCAACTACATTAATTCTTGGCTTCCTTACTTTGTTTCATTTTGTATGTATGTTTGGGAAAATAACTTCTTTCTATCCTGATCCAGGTCAGACAGCTGTTAGATGATGACCCTAGCAACTCTGAATACATAGATATGGAAAAGGAGCTTGAAGAGGTAGTTTGTTTTTTTCCTCTTATTATGCCCATCCTTCCTTGTGAACTCGTCGCATGTGTATGCTTTAGCACTCTTCATATTCCCGCTGAATGTACTTTTAGGTTCAGTTTCTGCTGTGGCACTAAAGATCAGACAACGCTCAGAACTATTATTTTTATTATGTGTGTTTTCAGTCAAGTTTGCTTTCTTTCTTTTGTTTGTCTTCCTTTTTCCTTTTAAAGGAAACGTGTTGTTGAAATAAGAAAGAGTTATGGCCCCTGTGGAGGTTGTCATTTTCATTTTTGGGAGGAAAAGGTGAGGGGGTTGTATCTTTCATTTATGTGCTCCAGAGCTCTAATCTCTGGTCATAAATGATCATTATTGGATATGTGTGAAAATTTGAAACTTCATTAAGATGCACATCACTTCTACCTTGGTTCCCTTGCAGGTGTGCTAATTTTCGTGATGGCCAGTCTGCTCTTCCCCTGACCTCCTTTCAGATGCTGATCCTGAGATTTAAGTTCTTGTGTTTTTTTTTTCTTTTTTTCTTTTTGGGGACAATTACCTGCTCTTTATGAAATTTTACAGTTGAAGATATATTTTAACAGAAACATTGGACTTGGGCTAAAGTTGCAGTAATGCAGGTTATCGCTTTGACGGAAGAACTTCTTTCAACAGCAAAGCAAAATGAGATTTCTGGATCAAATGTGGAAACAGGTGATGACAGTGCATTAATTAGTTTCCAGCAGCCTAAAGAAAATGAGATGGTAAGTTCACATTTGTCCTCATTTTGCACATTGCATTTCTCTGCTGGAAGCAACATAATGTCATAG

mRNA sequence

ATGCAAGGAGGAGAAGATGTAAGCATTGAAGAGTTGGCTAATAATCTCTCTACCTACAAGGACCAGCTTCAGCAGGTCAGACAGCTGTTAGATGATGACCCTAGCAACTCTGAATACATAGATATGGAAAAGGAGCTTGAAGAGAAACATTGGACTTGGGCTAAAGTTGCAGTAATGCAGGTTATCGCTTTGACGGAAGAACTTCTTTCAACAGCAAAGCAAAATGAGATTTCTGGATCAAATGTGGAAACAGGTGATGACAGTGCATTAATTAGTTTCCAGCAGCCTAAAGAAAATGAGATGGTAAGTTCACATTTGTCCTCATTTTGCACATTGCATTTCTCTGCTGGAAGCAACATAATGTCATAG

Coding sequence (CDS)

ATGCAAGGAGGAGAAGATGTAAGCATTGAAGAGTTGGCTAATAATCTCTCTACCTACAAGGACCAGCTTCAGCAGGTCAGACAGCTGTTAGATGATGACCCTAGCAACTCTGAATACATAGATATGGAAAAGGAGCTTGAAGAGAAACATTGGACTTGGGCTAAAGTTGCAGTAATGCAGGTTATCGCTTTGACGGAAGAACTTCTTTCAACAGCAAAGCAAAATGAGATTTCTGGATCAAATGTGGAAACAGGTGATGACAGTGCATTAATTAGTTTCCAGCAGCCTAAAGAAAATGAGATGGTAAGTTCACATTTGTCCTCATTTTGCACATTGCATTTCTCTGCTGGAAGCAACATAATGTCATAG

Protein sequence

MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVIALTEELLSTAKQNEISGSNVETGDDSALISFQQPKENEMVSSHLSSFCTLHFSAGSNIMS
Homology
[Close]
BLAST of Cla001904 vs. TrEMBL
Match: A0A0A0KUI2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G526860 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.4e-39
Identity = 91/109 (83.49%), Postives = 92/109 (84.40%), Query Frame = 1 

Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGGEDVSIEELANNLSTYKDQL QVRQLLDDDP NSEYIDMEKELEE            
Sbjct: 1   MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSALISFQQPKENEMVSSHLSSF 110
           VIALTEELLSTAKQNE+SGSNVETGDDSA I FQQ KENEMVSSHLSSF
Sbjct: 61  VIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMVSSHLSSF 97

[Close]
BLAST of Cla001904 vs. TrEMBL
Match: A0A067L5J3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00310 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.4e-22
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 1 

Query: 1  MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
          MQGGE+VSIEELA+NLSTYK+QL +VRQ+L DDP NSEY+DMEKEL E            
Sbjct: 1  MQGGEEVSIEELASNLSTYKEQLHKVRQILADDPDNSEYVDMEKELNE------------ 60

Query: 61 VIALTEELLSTAKQNEISGSNVETG 86
          VIALTEELL+TAKQNEISGS++ TG
Sbjct: 61 VIALTEELLATAKQNEISGSDIGTG 73

[Close]
BLAST of Cla001904 vs. TrEMBL
Match: V7C9G0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G075900g PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 63/104 (60.58%), Postives = 75/104 (72.12%), Query Frame = 1 

Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGG++VSIEELA+NLS YKDQL QVRQLL+D+PSNSEY+DME+EL E            
Sbjct: 1   MQGGDEVSIEELASNLSLYKDQLHQVRQLLNDEPSNSEYVDMERELSE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSALISFQQPKENEMVSS 105
           VIALTEELL+TAKQNEISGS       ++  S    KEN+M+ S
Sbjct: 61  VIALTEELLATAKQNEISGSTAAPNAGTS-PSLSIHKENQMLDS 91

[Close]
BLAST of Cla001904 vs. TrEMBL
Match: I3SL72_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 63/105 (60.00%), Postives = 75/105 (71.43%), Query Frame = 1 

Query: 2   QGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQV 61
           QG ++VSIEELA+NLSTYKDQL QVRQLL+DDPSNSEY+DME+EL E            V
Sbjct: 4   QGSDEVSIEELASNLSTYKDQLYQVRQLLNDDPSNSEYVDMERELRE------------V 63

Query: 62  IALTEELLSTAKQNEISGSN-VETGDDSALISFQQPKENEMVSSH 106
           IALTEELL+TAKQNE+S SN V   D S  +S     + E+ SS+
Sbjct: 64  IALTEELLATAKQNEMSSSNAVPNADTSPSLSNPMENKGELDSSY 96

[Close]
BLAST of Cla001904 vs. TrEMBL
Match: A0A0S3R9U1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G551500 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.4e-21
Identity = 62/104 (59.62%), Postives = 75/104 (72.12%), Query Frame = 1 

Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGG++VSIEELA+NLS YKDQL QVRQLL+D+PSNSEY+DME+EL E            
Sbjct: 1   MQGGDEVSIEELASNLSLYKDQLHQVRQLLNDEPSNSEYVDMERELSE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSALISFQQPKENEMVSS 105
           VIALTEELL+TAKQNE+SGS +   +     S    KEN+M+ S
Sbjct: 61  VIALTEELLATAKQNEMSGS-MAAPNAGTSPSLSIHKENQMLDS 91

[Close]
BLAST of Cla001904 vs. NCBI nr
Match: gi|700196219|gb|KGN51396.1| (hypothetical protein Csa_5G526860 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 4.8e-39
Identity = 91/109 (83.49%), Postives = 92/109 (84.40%), Query Frame = 1 

Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGGEDVSIEELANNLSTYKDQL QVRQLLDDDP NSEYIDMEKELEE            
Sbjct: 1   MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSALISFQQPKENEMVSSHLSSF 110
           VIALTEELLSTAKQNE+SGSNVETGDDSA I FQQ KENEMVSSHLSSF
Sbjct: 61  VIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMVSSHLSSF 97

[Close]
BLAST of Cla001904 vs. NCBI nr
Match: gi|449450113|ref|XP_004142808.1| (PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.9e-35
Identity = 84/109 (77.06%), Postives = 88/109 (80.73%), Query Frame = 1 

Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGGEDVSIEELANNLSTYKDQL QVRQLLDDDP NSEYIDMEKELEE            
Sbjct: 1   MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSALISFQQPKENEMVSSHLSSF 110
           VIALTEELLSTAKQNE+SGSNVETGDDSA I FQQ KENEM +  +S +
Sbjct: 61  VIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMEAGSMSDY 97

[Close]
BLAST of Cla001904 vs. NCBI nr
Match: gi|1012004320|ref|XP_015940050.1| (PREDICTED: survival of motor neuron-related-splicing factor 30 [Arachis duranensis])

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-22
Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 1 

Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGGE+VSIEELA+NLSTYKDQL QVRQLL D+P NSEY+DME+EL E            
Sbjct: 1   MQGGEEVSIEELASNLSTYKDQLHQVRQLLKDEPGNSEYVDMERELNE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSALISFQQPKENEM 102
           VIALTEELL+TAKQNEI GSN    + SA  +  +PK+NE+
Sbjct: 61  VIALTEELLATAKQNEICGSNAGP-NASAPSTLSKPKDNEV 88

[Close]
BLAST of Cla001904 vs. NCBI nr
Match: gi|1000949105|ref|XP_015580062.1| (PREDICTED: LOW QUALITY PROTEIN: survival of motor neuron-related-splicing factor 30 [Ricinus communis])

HSP 1 Score: 113.2 bits (282), Expect = 3.1e-22
Identity = 69/124 (55.65%), Postives = 81/124 (65.32%), Query Frame = 1 

Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGGE+VSIEELA+NLSTYK QL QVR+LL DDP NSEY DMEKEL+E            
Sbjct: 1   MQGGEEVSIEELASNLSTYKQQLHQVRELLVDDPYNSEYADMEKELKE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSALISFQQPKENEMVSSHLSSFCTLH--FSAGS 120
           VIALTEELL+TAKQNEI GS++ TG   + I   QPK     +  L  FC  H  F  G+
Sbjct: 61  VIALTEELLATAKQNEIPGSDIGTGTSESPI-LPQPKSK--XNXRLLFFCIYHEKFPIGA 109

Query: 121 NIMS 123
            + +
Sbjct: 121 KVQA 109

[Close]
BLAST of Cla001904 vs. NCBI nr
Match: gi|1021472014|ref|XP_016194893.1| (PREDICTED: survival of motor neuron-related-splicing factor 30 [Arachis ipaensis])

HSP 1 Score: 112.5 bits (280), Expect = 5.4e-22
Identity = 63/101 (62.38%), Postives = 75/101 (74.26%), Query Frame = 1 

Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGGE+VSIEELA+NLSTYKDQL QVRQLL D+P NSEY+DME+EL E            
Sbjct: 1   MQGGEEVSIEELASNLSTYKDQLHQVRQLLKDEPGNSEYVDMERELNE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSALISFQQPKENEM 102
           VIALTEELL+TAKQNEI GS+    + SA  +  +PK+NE+
Sbjct: 61  VIALTEELLATAKQNEICGSDAGP-NASAPSTLSKPKDNEV 88

The following BLAST results are available for this feature:
BLAST of Cla001904 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUI2_CUCSA3.4e-3983.49Uncharacterized protein OS=Cucumis sativus GN=Csa_5G526860 PE=4 SV=1[more]
A0A067L5J3_JATCU6.4e-2269.41Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00310 PE=4 SV=1[more]
V7C9G0_PHAVU1.4e-2160.58Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G075900g PE=4 SV=1[more]
I3SL72_LOTJA1.9e-2160.00Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A0S3R9U1_PHAAN5.4e-2159.62Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G551500 PE=... [more]
BLAST of Cla001904 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196219|gb|KGN51396.1|4.8e-3983.49hypothetical protein Csa_5G526860 [Cucumis sativus][more]
gi|449450113|ref|XP_004142808.1|1.9e-3577.06PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X1 [Cucum... [more]
gi|1012004320|ref|XP_015940050.1|1.4e-2263.37PREDICTED: survival of motor neuron-related-splicing factor 30 [Arachis duranens... [more]
gi|1000949105|ref|XP_015580062.1|3.1e-2255.65PREDICTED: LOW QUALITY PROTEIN: survival of motor neuron-related-splicing factor... [more]
gi|1021472014|ref|XP_016194893.1|5.4e-2262.38PREDICTED: survival of motor neuron-related-splicing factor 30 [Arachis ipaensis... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
biological_process GO:0010413 glucuronoxylan metabolic process
biological_process GO:0045492 xylan biosynthetic process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003723 RNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU41394watermelon EST collection version 2.0transcribed_cluster
WMU61071watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001904Cla001904.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU41394WMU41394transcribed_cluster
WMU61071WMU61071transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 9..29
scor