Cla001901 (gene) Watermelon (97103) v1

Overview
NameCla001901
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionAtV27-like protein (Fragment) (AHRD V1 *-*- D9YTM6_ARAHA); contains Interpro domain(s) IPR008672 Mitotic checkpoint
LocationChr11 : 26712841 .. 26714290 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGTCAGGACTCCTCCACCGAAGAAGCAGCGATCCGATGTTACGTCTCTGCCCGATTCCTCATTGGCAGGTGCCTCAGATTTACCGCTCGTTATCTATGAAGATCCTCTTCCCTTGGTGCCAGCAACAACACAACCAGGCTTGTCGCACGAGCCCTCTGAGCACATGCTTTGCACTTACCAATGTCGCCAAATGGTTCGGAATATTACTTCCCTTTGCTCTTCTCAAATCTATGTATTGTTATTGATACATCACTTCGTAGTCCTGTTATTTAGTGAAGTTTGTTAGTTGTTCAAAATGTTTGATGTTTCTGAACTCTATTGGGAGGCATACATGCGTAGATGTTAACCTGTCTAAACCCAATTAACTATTTTGTCGAGATAGTGGTTTGAACAAACTCTTGAGTATCATGGTCTTCTTCTAGCAGGTAGTCTGATAGCCATGTGCTTCTAAATCGTGTTGAGGAATAAGGTCGCAAGAAAACTCCCAAAATATCAGGTGTTCATCTTAAAGGCAGGCAAACTCCAACTAGGTTGTCCAATTTGACATTTCCACCCATTGCGTATGTTAGCTAAGTTACCTTTTAAATCAGCCCTGGAATTTGAGCAGATCAGGAGATATTTTGGGTAATTTAGAGGGAGCAAACAGCTGCCTCTTTCCTGATAGTTGTTGAGGTTTTTATTTGGAATTTGATACTTTGTGGCATGGCTATCTCTAACAAGTACGGTATTGATTGGATTGGTTGGTCCAGTGACTCTTCTTCTCTTGTTAGTAGTAGATCATATATCATTATTCTTTTGGTAGTAAAGCCTAGATTCTCTAGCTTATTGCAACAAAGCCATCGAAGAAAGAACTTGATTTGAAGATTTGGTAAGAAATTGAGGGGACTAATGCTCAAAATACAATAACAAAAATAAGAAGACAAAAAGCAATCCTTCTACCATAATACACAAGAACTAAGTAGGAAAAACGAAGGCATTCCGATTTAAACATATATCTTGAATAGAGAATTTTGCAAAAGACTTGGAGAATCCAACCTCAACCTTTTTTCAACATATTCAACATACTCCAATTGTTTTATCCTCCATGGGGTAGTTGATATGGTATGATTTATGCCACCTTCTAGAAATCTATGCCGTGTCAAAGTATGTTTGGCCACTGGCAATCCTTGTTACCTATTTCACAACATTTATTATTTTATTATATTTTAGAAATGGAATATCTTTGTTTTTTGACACATTAAACTTTAGTTTTAGAACTCACATATGAACCTTACAAAATAAGCTTTCCAACACTTTCATATTTTGTCCCATGAACTTTTAATCTTGTTTATTTTCAGGTGAAGTCAGACTTCTTAGATGCATTAAGCAATGCAGAGAAGCAAGTTCATGATTACGAATTGAAGCTGGGCGTGCTAAATGAGAACCTCTCCAAAGTTGGTGAGTAG

mRNA sequence

ATGATTGTCAGGACTCCTCCACCGAAGAAGCAGCGATCCGATGTTACGTCTCTGCCCGATTCCTCATTGGCAGGTGCCTCAGATTTACCGCTCGTTATCTATGAAGATCCTCTTCCCTTGGTGCCAGCAACAACACAACCAGGCTTGTCGCACGAGCCCTCTGAGCACATGCTTTGCACTTACCAATGTCGCCAAATGGTGAAGTCAGACTTCTTAGATGCATTAAGCAATGCAGAGAAGCAAGTTCATGATTACGAATTGAAGCTGGGCGTGCTAAATGAGAACCTCTCCAAAGTTGGTGAGTAG

Coding sequence (CDS)

ATGATTGTCAGGACTCCTCCACCGAAGAAGCAGCGATCCGATGTTACGTCTCTGCCCGATTCCTCATTGGCAGGTGCCTCAGATTTACCGCTCGTTATCTATGAAGATCCTCTTCCCTTGGTGCCAGCAACAACACAACCAGGCTTGTCGCACGAGCCCTCTGAGCACATGCTTTGCACTTACCAATGTCGCCAAATGGTGAAGTCAGACTTCTTAGATGCATTAAGCAATGCAGAGAAGCAAGTTCATGATTACGAATTGAAGCTGGGCGTGCTAAATGAGAACCTCTCCAAAGTTGGTGAGTAG

Protein sequence

MIVRTPPPKKQRSDVTSLPDSSLAGASDLPLVIYEDPLPLVPATTQPGLSHEPSEHMLCTYQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSKVGE
Homology
[Close]
BLAST of Cla001901 vs. Swiss-Prot
Match: MAD1_ARATH (Mitotic spindle checkpoint protein MAD1 OS=Arabidopsis thaliana GN=MAD1 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-18
Identity = 53/99 (53.54%), Postives = 61/99 (61.62%), Query Frame = 1 

Query: 1  MIVRTPPPKKQRSDVTSLPDSSLAGASDLPLVIYED-PLPLVPATTQPGLSHEPSEHMLC 60
          MI+RTP PK+ RSD    P  + A  S   L+IYED PLP  PA  Q    H   +H LC
Sbjct: 1  MILRTPQPKRLRSDAGESPFPTGATGSGNQLIIYEDSPLP-APAPLQTSHDHSADQH-LC 60

Query: 61 TYQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSK 99
          TYQCRQMVK+D LDALS AEKQV + + KL  LN N ++
Sbjct: 61 TYQCRQMVKADVLDALSTAEKQVEESKTKLQTLNANFTE 97

[Close]
BLAST of Cla001901 vs. TrEMBL
Match: A0A0A0KV95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630750 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-45
Identity = 93/99 (93.94%), Postives = 95/99 (95.96%), Query Frame = 1 

Query: 1   MIVRTPPPKKQRSDVTSLPDSSLAGASDLPLVIYEDPLPLVPATTQPGLSHEPSEHMLCT 60
           MIVRTPPPKKQRSDVTSLPDSS A ASDLPLVIYEDPLPLVPATT+P  SHEPS+HMLCT
Sbjct: 1   MIVRTPPPKKQRSDVTSLPDSSPAAASDLPLVIYEDPLPLVPATTEPASSHEPSDHMLCT 60

Query: 61  YQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSKV 100
           YQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSKV
Sbjct: 61  YQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSKV 99

[Close]
BLAST of Cla001901 vs. TrEMBL
Match: A0A0D2SUQ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G175200 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.6e-24
Identity = 62/102 (60.78%), Postives = 74/102 (72.55%), Query Frame = 1 

Query: 1   MIVRTPPPKKQRSDVTSLPDSSLAGASDLPLVIYED-PLPLVPATTQPGLSHEPSEHMLC 60
           MI+RTPPPKKQR++       S   AS+  LVIYED PL   P    P   H+PS+H+LC
Sbjct: 1   MILRTPPPKKQRAEPILHESPSPQVASEGRLVIYEDNPLAAPP----PESPHQPSDHLLC 60

Query: 61  TYQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSKVGE 102
           TYQCRQMVK+DF+DALSNAEKQ+ DY+ KL +LNENLSK  E
Sbjct: 61  TYQCRQMVKADFIDALSNAEKQIRDYQSKLEILNENLSKAAE 98

[Close]
BLAST of Cla001901 vs. TrEMBL
Match: B9SPB2_RICCO (Spindle assembly checkpoint component mad1, putative OS=Ricinus communis GN=RCOM_0496470 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 

Query: 1  MIVRTPPPKKQRSDVTSLPDSSLAGASDLPLVIYEDPLPLVPATTQPGLS-HEPSEHMLC 60
          MI+RTPPPK+ R DV ++  S +      PL+IYEDP  +V          H+PS+HMLC
Sbjct: 1  MILRTPPPKRPRDDVKAIETSPVGSDRRQPLIIYEDPAVIVQHPDDSSHEPHQPSDHMLC 60

Query: 61 TYQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSK 99
          TYQCRQMVKSDF DALSNAEKQ  DY+ KL  LNEN SK
Sbjct: 61 TYQCRQMVKSDFFDALSNAEKQASDYQSKLETLNENFSK 99

[Close]
BLAST of Cla001901 vs. TrEMBL
Match: A0A0D2R9G9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G175200 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-23
Identity = 61/99 (61.62%), Postives = 73/99 (73.74%), Query Frame = 1 

Query: 1  MIVRTPPPKKQRSDVTSLPDSSLAGASDLPLVIYED-PLPLVPATTQPGLSHEPSEHMLC 60
          MI+RTPPPKKQR++       S   AS+  LVIYED PL   P    P   H+PS+H+LC
Sbjct: 1  MILRTPPPKKQRAEPILHESPSPQVASEGRLVIYEDNPLAAPP----PESPHQPSDHLLC 60

Query: 61 TYQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSK 99
          TYQCRQMVK+DF+DALSNAEKQ+ DY+ KL +LNENLSK
Sbjct: 61 TYQCRQMVKADFIDALSNAEKQIRDYQSKLEILNENLSK 95

[Close]
BLAST of Cla001901 vs. TrEMBL
Match: A0A0D2R9G5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G175200 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-23
Identity = 61/99 (61.62%), Postives = 73/99 (73.74%), Query Frame = 1 

Query: 1  MIVRTPPPKKQRSDVTSLPDSSLAGASDLPLVIYED-PLPLVPATTQPGLSHEPSEHMLC 60
          MI+RTPPPKKQR++       S   AS+  LVIYED PL   P    P   H+PS+H+LC
Sbjct: 1  MILRTPPPKKQRAEPILHESPSPQVASEGRLVIYEDNPLAAPP----PESPHQPSDHLLC 60

Query: 61 TYQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSK 99
          TYQCRQMVK+DF+DALSNAEKQ+ DY+ KL +LNENLSK
Sbjct: 61 TYQCRQMVKADFIDALSNAEKQIRDYQSKLEILNENLSK 95

[Close]
BLAST of Cla001901 vs. NCBI nr
Match: gi|449449214|ref|XP_004142360.1| (PREDICTED: mitotic spindle checkpoint protein MAD1 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.7e-45
Identity = 93/99 (93.94%), Postives = 95/99 (95.96%), Query Frame = 1 

Query: 1   MIVRTPPPKKQRSDVTSLPDSSLAGASDLPLVIYEDPLPLVPATTQPGLSHEPSEHMLCT 60
           MIVRTPPPKKQRSDVTSLPDSS A ASDLPLVIYEDPLPLVPATT+P  SHEPS+HMLCT
Sbjct: 1   MIVRTPPPKKQRSDVTSLPDSSPAAASDLPLVIYEDPLPLVPATTEPASSHEPSDHMLCT 60

Query: 61  YQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSKV 100
           YQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSKV
Sbjct: 61  YQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSKV 99

[Close]
BLAST of Cla001901 vs. NCBI nr
Match: gi|700197195|gb|KGN52372.1| (hypothetical protein Csa_5G630750 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.7e-45
Identity = 93/99 (93.94%), Postives = 95/99 (95.96%), Query Frame = 1 

Query: 1   MIVRTPPPKKQRSDVTSLPDSSLAGASDLPLVIYEDPLPLVPATTQPGLSHEPSEHMLCT 60
           MIVRTPPPKKQRSDVTSLPDSS A ASDLPLVIYEDPLPLVPATT+P  SHEPS+HMLCT
Sbjct: 1   MIVRTPPPKKQRSDVTSLPDSSPAAASDLPLVIYEDPLPLVPATTEPASSHEPSDHMLCT 60

Query: 61  YQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSKV 100
           YQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSKV
Sbjct: 61  YQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSKV 99

[Close]
BLAST of Cla001901 vs. NCBI nr
Match: gi|659121307|ref|XP_008460594.1| (PREDICTED: myosin heavy chain, clone 203 [Cucumis melo])

HSP 1 Score: 187.2 bits (474), Expect = 1.4e-44
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 1 

Query: 1   MIVRTPPPKKQRSDVTSLPDSSLAGASDLPLVIYEDPLPLVPATTQPGLSHEPSEHMLCT 60
           MIVRTPPPKKQRSDVTSLPDSS A ASDLPLVIYEDPLPLVPATTQP  SH PS+HMLCT
Sbjct: 1   MIVRTPPPKKQRSDVTSLPDSSPAAASDLPLVIYEDPLPLVPATTQPASSHLPSDHMLCT 60

Query: 61  YQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSKV 100
           YQCRQMVKSDFLDALSNAEKQVHDYELKLG+LNENLSKV
Sbjct: 61  YQCRQMVKSDFLDALSNAEKQVHDYELKLGMLNENLSKV 99

[Close]
BLAST of Cla001901 vs. NCBI nr
Match: gi|763800158|gb|KJB67113.1| (hypothetical protein B456_010G175200 [Gossypium raimondii])

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-23
Identity = 62/102 (60.78%), Postives = 74/102 (72.55%), Query Frame = 1 

Query: 1   MIVRTPPPKKQRSDVTSLPDSSLAGASDLPLVIYED-PLPLVPATTQPGLSHEPSEHMLC 60
           MI+RTPPPKKQR++       S   AS+  LVIYED PL   P    P   H+PS+H+LC
Sbjct: 1   MILRTPPPKKQRAEPILHESPSPQVASEGRLVIYEDNPLAAPP----PESPHQPSDHLLC 60

Query: 61  TYQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSKVGE 102
           TYQCRQMVK+DF+DALSNAEKQ+ DY+ KL +LNENLSK  E
Sbjct: 61  TYQCRQMVKADFIDALSNAEKQIRDYQSKLEILNENLSKAAE 98

[Close]
BLAST of Cla001901 vs. NCBI nr
Match: gi|255573824|ref|XP_002527831.1| (PREDICTED: mitotic spindle checkpoint protein MAD1 [Ricinus communis])

HSP 1 Score: 116.7 bits (291), Expect = 2.4e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 

Query: 1  MIVRTPPPKKQRSDVTSLPDSSLAGASDLPLVIYEDPLPLVPATTQPGLS-HEPSEHMLC 60
          MI+RTPPPK+ R DV ++  S +      PL+IYEDP  +V          H+PS+HMLC
Sbjct: 1  MILRTPPPKRPRDDVKAIETSPVGSDRRQPLIIYEDPAVIVQHPDDSSHEPHQPSDHMLC 60

Query: 61 TYQCRQMVKSDFLDALSNAEKQVHDYELKLGVLNENLSK 99
          TYQCRQMVKSDF DALSNAEKQ  DY+ KL  LNEN SK
Sbjct: 61 TYQCRQMVKSDFFDALSNAEKQASDYQSKLETLNENFSK 99

The following BLAST results are available for this feature:
BLAST of Cla001901 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MAD1_ARATH5.1e-1853.54Mitotic spindle checkpoint protein MAD1 OS=Arabidopsis thaliana GN=MAD1 PE=1 SV=... [more]
BLAST of Cla001901 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV95_CUCSA1.2e-4593.94Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630750 PE=4 SV=1[more]
A0A0D2SUQ1_GOSRA9.6e-2460.78Uncharacterized protein OS=Gossypium raimondii GN=B456_010G175200 PE=4 SV=1[more]
B9SPB2_RICCO1.6e-2358.59Spindle assembly checkpoint component mad1, putative OS=Ricinus communis GN=RCOM... [more]
A0A0D2R9G9_GOSRA3.7e-2361.62Uncharacterized protein OS=Gossypium raimondii GN=B456_010G175200 PE=4 SV=1[more]
A0A0D2R9G5_GOSRA3.7e-2361.62Uncharacterized protein OS=Gossypium raimondii GN=B456_010G175200 PE=4 SV=1[more]
BLAST of Cla001901 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449449214|ref|XP_004142360.1|1.7e-4593.94PREDICTED: mitotic spindle checkpoint protein MAD1 [Cucumis sativus][more]
gi|700197195|gb|KGN52372.1|1.7e-4593.94hypothetical protein Csa_5G630750 [Cucumis sativus][more]
gi|659121307|ref|XP_008460594.1|1.4e-4492.93PREDICTED: myosin heavy chain, clone 203 [Cucumis melo][more]
gi|763800158|gb|KJB67113.1|1.4e-2360.78hypothetical protein B456_010G175200 [Gossypium raimondii][more]
gi|255573824|ref|XP_002527831.1|2.4e-2358.59PREDICTED: mitotic spindle checkpoint protein MAD1 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007094 mitotic spindle assembly checkpoint
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001901Cla001901.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 75..101
scor