Cla001865 (gene) Watermelon (97103) v1

Overview
NameCla001865
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 12092803 .. 12093318 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCATTACTACAGTTGGTTGACAGTGGGTGGAGCGCTGATAATGGTACGTTCAAGCCTAGCTATCTACAACAACTCCAACGTCTGCTGCATGAGAAAGTTCCTAATTGTGGCATAGGGGTAGCCACAATAGAGTGTAGAGTTATATTTTTAAAGTGATAGTATACAGCGATTGCTAAGATGTTGAGTAATGCATGCAACGGATTTAGTTGGAACGAGGACTTTAAGTGTGTAGACGCTGAGCAGGACATGTTTAGTCTATAGGTCTGGGTAAGACCACTTTATAATATACTATGACAATTGATATAATTTTTACTAACATATTATATCCATTTGTAGTCACATCCCAATGTGAAAGGTATGAGGCACAAACCACTCCCACACTATGATGATCTTTCCATCGTGTTTGGAAGGGATAAGGCTATTGGTGATAGCTGTCAAACCCCTCTTGATCAAGCATATGAGACAAATGACCATGTAGGGGATGTTAGGTTGGGATCACAGGATAATTAG

mRNA sequence

ATGGAGTCATTACTACAGTTGGTTGACAGTGGGTGGAGCGCTGATAATGGTACGTTCAAGCCTAGCTATCTACAACAACTCCAACGTCTGCTGCATGAGAAAGTTCCTAATTGTGGCATAGGGTCACATCCCAATGTGAAAGGTATGAGGCACAAACCACTCCCACACTATGATGATCTTTCCATCGTGTTTGGAAGGGATAAGGCTATTGGTGATAGCTGTCAAACCCCTCTTGATCAAGCATATGAGACAAATGACCATGTAGGGGATGTTAGGTTGGGATCACAGGATAATTAG

Coding sequence (CDS)

ATGGAGTCATTACTACAGTTGGTTGACAGTGGGTGGAGCGCTGATAATGGTACGTTCAAGCCTAGCTATCTACAACAACTCCAACGTCTGCTGCATGAGAAAGTTCCTAATTGTGGCATAGGGTCACATCCCAATGTGAAAGGTATGAGGCACAAACCACTCCCACACTATGATGATCTTTCCATCGTGTTTGGAAGGGATAAGGCTATTGGTGATAGCTGTCAAACCCCTCTTGATCAAGCATATGAGACAAATGACCATGTAGGGGATGTTAGGTTGGGATCACAGGATAATTAG

Protein sequence

MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLDQAYETNDHVGDVRLGSQDN
Homology
[Close]
BLAST of Cla001865 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.9e-07
Identity = 41/128 (32.03%), Postives = 58/128 (45.31%), Query Frame = 1 

Query: 1   MESLLQLVDSG-WSADNGTFKPSYLQQLQRLLHEKVP----------------------- 60
           +E L++LV++G W +DNGTF+P YL QL R++  K+P                       
Sbjct: 376 VECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHAL 435

Query: 61  ------NC-GIG------------------SHPNVKGMRHKPLPHYDDLSIVFGRDKAIG 80
                 NC G G                  SHP  KG+ +K   HYD+LS VFG+D+A G
Sbjct: 436 AEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATG 495

[Close]
BLAST of Cla001865 vs. TrEMBL
Match: A0A072UYX1_MEDTR (Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g075160 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.9e-07
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 1 

Query: 1  MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDL 60
          ++ LLQLVD GW AD GTFKP Y + L+R L +K+P+C + ++P+++    +   HY  +
Sbjct: 26 VQGLLQLVDDGWKADAGTFKPGYTKVLERYLLKKIPDCTLKANPHIESRVKRLKSHYSAI 85

Query: 61 SIVFG 66
            + G
Sbjct: 86 RDMLG 90

[Close]
BLAST of Cla001865 vs. TrEMBL
Match: A0A072UYX1_MEDTR (Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g075160 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.7e-05
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 1 

Query: 42  SHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLDQAY 83
           SHPN  G+  KP PHY+ L  VFG+DKA GD+ + P D AY
Sbjct: 118 SHPNATGLFGKPFPHYERLHNVFGKDKACGDTSEDPADHAY 158


HSP 2 Score: 60.8 bits (146), Expect = 1.0e-06
Identity = 38/135 (28.15%), Postives = 58/135 (42.96%), Query Frame = 1 

Query: 1   MESLLQLVDSG-WSADNGTFKPSYLQQLQRLLHEKVPNCG-------------------- 60
           ++SLL+LVD G W A+NG  K     +L++++ E +P CG                    
Sbjct: 32  VKSLLKLVDDGGWRAENGQLKSGAYGKLEKIMGELLPGCGMKARPHIESRVRLLRKQFFA 91

Query: 61  -------------------------------IGSHPNVKGMRHKPLPHYDDLSIVFGRDK 84
                                          + SHPN KG+R+K  P YD+L+ VFG+D+
Sbjct: 92  IEEMRGPNCSGFGWNELEKSITCEKSIFEEWLKSHPNAKGLRNKSFPFYDELAQVFGKDR 151

[Close]
BLAST of Cla001865 vs. TrEMBL
Match: A0A0A0M0S6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665930 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-06
Identity = 39/123 (31.71%), Postives = 62/123 (50.41%), Query Frame = 1 

Query: 1   MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKV-------------PNC-------- 60
           +E LLQL++ S W A N TFK  YL ++Q+L+ EK+               C        
Sbjct: 24  VECLLQLMEKSDWRAYNWTFKLGYLVKVQKLIKEKLLEATYNRFGWNEERKCIKVEKSMF 83

Query: 61  --GIGSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLDQAYETNDHV--GDVRLG 98
              +  H N +G+ +K   ++ DL IV GRD+ IGD C+TP++   +T   +   D+ + 
Sbjct: 84  DDWVKEHHNARGLLNKSFSYFYDLQIVIGRDRTIGDRCKTPVEMDPQTTKDIEKDDIGIN 143

[Close]
BLAST of Cla001865 vs. TrEMBL
Match: A0A161XV48_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018898 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.1e-06
Identity = 35/135 (25.93%), Postives = 58/135 (42.96%), Query Frame = 1 

Query: 1   MESLLQLV-DSGWSADNGTFKPSYLQQLQRLLHEKVPNCG-------------------- 60
           +++L++L+ D GW A+NG  K     +L++++ +  P CG                    
Sbjct: 30  VKALMRLIEDGGWRAENGQLKSGAYGKLEKIMEDIQPGCGMKARPHIESRVRLWRKQYFA 89

Query: 61  -------------------------------IGSHPNVKGMRHKPLPHYDDLSIVFGRDK 84
                                          + SHPN KG+R+K  P+YD+LS VFG+D+
Sbjct: 90  IEEMRGPNCSGFGWNELDKSITCEKSIFEDWLKSHPNAKGLRNKSFPYYDELSQVFGKDR 149

[Close]
BLAST of Cla001865 vs. NCBI nr
Match: gi|659113923|ref|XP_008456820.1| (PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 6.2e-13
Identity = 47/108 (43.52%), Postives = 62/108 (57.41%), Query Frame = 1 

Query: 1   MESLLQLVDSG-WSADNGTFKPSYLQQLQRLLHEKVPNCGIG--------SHPNVKGMRH 60
           +E L++LV +G W +DNGTF+  YL QLQR++ EK+P+  I         SHP  KG+ H
Sbjct: 21  VECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCRSHPAAKGLLH 80

Query: 61  KPLPHYDDLSIVFGRDKAIGDSCQTPLDQAYETNDHVGD-VRLGSQDN 99
           K  P+YDDLS VFG D A G   +T  D     ++   D V LG   N
Sbjct: 81  KSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHN 128

[Close]
BLAST of Cla001865 vs. NCBI nr
Match: gi|672172947|ref|XP_008806587.1| (PREDICTED: uncharacterized protein LOC103719223 [Phoenix dactylifera])

HSP 1 Score: 81.6 bits (200), Expect = 8.1e-13
Identity = 43/122 (35.25%), Postives = 61/122 (50.00%), Query Frame = 1 

Query: 1   MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGIG------------------ 60
           +E+L++ V   GW  DNGTF+  YLQQL+RL+ EK+  CG+                   
Sbjct: 406 VEALVEFVTRGGWRGDNGTFRSGYLQQLERLIEEKLSGCGLKATPHIESRVKLLKKQYNA 465

Query: 61  --------------------SHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLDQA 84
                               SHPN +GMR+KP PH++DL+ +FGRD+A G   + P+D  
Sbjct: 466 IAEMLGPNCSGFGWDDINKCSHPNAQGMRNKPFPHFEDLTNIFGRDRATGMGAEAPVDAV 525

[Close]
BLAST of Cla001865 vs. NCBI nr
Match: gi|659125959|ref|XP_008462939.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 41/106 (38.68%), Postives = 55/106 (51.89%), Query Frame = 1 

Query: 1   MESLLQLVDSG-WSADNGTFKPSYLQQLQRLLHEKVPNCG-------------------- 60
           +E LLQLV+ G W ADNGTFKP YL+Q   +       C                     
Sbjct: 22  VECLLQLVEEGGWRADNGTFKPGYLKQYTAIAEMMGQACSGFGWNEERKCIEAEKSVFDD 81

Query: 61  -IGSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLDQAYET 85
            +  HPN + + +KP P++ DL IVFGRD A GD C+TP++   +T
Sbjct: 82  WVKGHPNARDLLNKPFPYFYDLKIVFGRDMATGDRCKTPVEMGSQT 127

[Close]
BLAST of Cla001865 vs. NCBI nr
Match: gi|672198585|ref|XP_008777372.1| (PREDICTED: uncharacterized protein LOC103697309 [Phoenix dactylifera])

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-08
Identity = 43/145 (29.66%), Postives = 68/145 (46.90%), Query Frame = 1 

Query: 1   MESLLQLVDSG-WSADNGTFKPSYLQQLQRLL-----------------HEKV------- 60
           +E L+++V++G W  DNGTF+P + Q L+R++                 H K+       
Sbjct: 35  VECLIEVVNAGGWKGDNGTFRPGFHQHLERMMEKKLPGCGLRGNSHIENHVKLLKKQYNA 94

Query: 61  ------PNCG---------------------IGSHPNVKGMRHKPLPHYDDLSIVFGRDK 91
                 PNC                      + SHP+  G+R+KP P+Y+DLSIVFG+D+
Sbjct: 95  IAEMFGPNCSGFGWNDREKCVVADKDVYDLWVKSHPHAAGLRNKPFPYYEDLSIVFGKDR 154

[Close]
BLAST of Cla001865 vs. NCBI nr
Match: gi|672109629|ref|XP_008791120.1| (PREDICTED: uncharacterized protein LOC103708116 [Phoenix dactylifera])

HSP 1 Score: 65.5 bits (158), Expect = 6.0e-08
Identity = 44/145 (30.34%), Postives = 69/145 (47.59%), Query Frame = 1 

Query: 1   MESLLQLVD-SGWSADNGTFKPSYLQQLQRLL-----------------HEKV------- 60
           +E L+++V+ SGW  DNGTF+P + Q L+R++                 + K+       
Sbjct: 251 VECLIEVVNASGWKGDNGTFRPGFHQHLERMMEKKLPGCGLRGNPHIENYVKLLKKQYNA 310

Query: 61  ------PNC-GIG--------------------SHPNVKGMRHKPLPHYDDLSIVFGRDK 91
                 PNC G G                    SHP+  G+R+KP P+Y+DLSI+FG+D+
Sbjct: 311 IAEILGPNCLGFGWNDREKCVVADKDVYDLWVKSHPHATGLRNKPFPYYEDLSIMFGKDR 370

The following BLAST results are available for this feature:
BLAST of Cla001865 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB5_CUCME7.9e-0732.03Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A072UYX1_MEDTR7.9e-0740.00Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g075160 ... [more]
A0A072UYX1_MEDTR9.7e-0556.10Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g075160 ... [more]
A0A0A0M0S6_CUCSA1.0e-0631.71Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665930 PE=4 SV=1[more]
A0A161XV48_DAUCA5.1e-0625.93Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018898 PE=4 SV=1[more]
BLAST of Cla001865 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113923|ref|XP_008456820.1|6.2e-1343.52PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo][more]
gi|672172947|ref|XP_008806587.1|8.1e-1335.25PREDICTED: uncharacterized protein LOC103719223 [Phoenix dactylifera][more]
gi|659125959|ref|XP_008462939.1|1.5e-1138.68PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|672198585|ref|XP_008777372.1|1.6e-0829.66PREDICTED: uncharacterized protein LOC103697309 [Phoenix dactylifera][more]
gi|672109629|ref|XP_008791120.1|6.0e-0830.34PREDICTED: uncharacterized protein LOC103708116 [Phoenix dactylifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001865Cla001865.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla001865Cla97C01G012780Watermelon (97103) v2wmwmbB248
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001865Cucumber (Gy14) v1cgywmB391
Cla001865Cucurbita maxima (Rimu)cmawmB165
Cla001865Cucurbita maxima (Rimu)cmawmB204
Cla001865Cucurbita moschata (Rifu)cmowmB151
Cla001865Cucurbita moschata (Rifu)cmowmB191
Cla001865Melon (DHL92) v3.5.1mewmB169
Cla001865Watermelon (Charleston Gray)wcgwmB156
Cla001865Cucumber (Chinese Long) v2cuwmB054
Cla001865Cucurbita pepo (Zucchini)cpewmB515
Cla001865Cucurbita pepo (Zucchini)cpewmB805
Cla001865Bottle gourd (USVL1VR-Ls)lsiwmB263
Cla001865Cucumber (Gy14) v2cgybwmB054
Cla001865Melon (DHL92) v3.6.1medwmB165
Cla001865Silver-seed gourdcarwmB0157
Cla001865Cucumber (Chinese Long) v3cucwmB060
Cla001865Wax gourdwgowmB499