Cla001864 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001864
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Histone H2B (AHRD V1 -- D7LK79_ARALL); contains Interpro domain(s) IPR000558 Histone H2B
Location	Chr1 : 12085940 .. 12086194 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCAAAGGCCGAGAAGAAGCCAACGGCGGAGGAGAAGAAGTCTGAGAAGGCTCTAGTGGAGAAGAAGCTGAGAGCCGAGAAGAAACTTCCCAAAGACGTCTCTGATAAGAAGAAGAAGAAGAAGGCTAAGAAGAGCGTTGAGACTTACAAGATCTACATCTTCAAGGTGCTCAAGCAAGTCCATCCTGACATTGGAATCTCCAACGAAGCCATGGGGATTATGAACAGTTTCATCAACGACATTTTTTAA

mRNA sequence

ATGGCACCAAAGGCCGAGAAGAAGCCAACGGCGGAGGAGAAGAAGTCTGAGAAGGCTCTAGTGGAGAAGAAGCTGAGAGCCGAGAAGAAACTTCCCAAAGACGTCTCTGATAAGAAGAAGAAGAAGAAGGCTAAGAAGAGCGTTGAGACTTACAAGATCTACATCTTCAAGGTGCTCAAGCAAGTCCATCCTGACATTGGAATCTCCAACGAAGCCATGGGGATTATGAACAGTTTCATCAACGACATTTTTTAA

Coding sequence (CDS)

ATGGCACCAAAGGCCGAGAAGAAGCCAACGGCGGAGGAGAAGAAGTCTGAGAAGGCTCTAGTGGAGAAGAAGCTGAGAGCCGAGAAGAAACTTCCCAAAGACGTCTCTGATAAGAAGAAGAAGAAGAAGGCTAAGAAGAGCGTTGAGACTTACAAGATCTACATCTTCAAGGTGCTCAAGCAAGTCCATCCTGACATTGGAATCTCCAACGAAGCCATGGGGATTATGAACAGTTTCATCAACGACATTTTTTAA

Protein sequence

MAPKAEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

Homology

[Close]

BLAST of Cla001864 vs. Swiss-Prot
Match: H2B1_SOLLC (Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4)

HSP 1 Score: 124.8 bits (312), Expect = 4.5e-28
Identity = 65/88 (73.86%), Postives = 71/88 (80.68%), Query Frame = 1


Query: 1  MAPKAEKKPT----AEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIF 60
          MAPKA KKP      EEKK+E+   EKK +A KKLPKD    KKKKK+KKSVETYKIYIF
Sbjct: 1  MAPKAGKKPAEKKPVEEKKAEEVPAEKKPKAGKKLPKDAGADKKKKKSKKSVETYKIYIF 60

Query: 61 KVLKQVHPDIGISNEAMGIMNSFINDIF 85
          KVLKQVHPDIGIS+++MGIMNSFINDIF
Sbjct: 61 KVLKQVHPDIGISSKSMGIMNSFINDIF 88

[Close]

BLAST of Cla001864 vs. Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 120.9 bits (302), Expect = 6.5e-27
Identity = 68/94 (72.34%), Postives = 74/94 (78.72%), Query Frame = 1


Query: 1  MAPKAEKKPT----AEEKKS---EKALVEKKLRAEKKLPKD---VSDKKKKKKAKKSVET 60
          MAPK EKKP     AEEKKS   EKA  EKK +A KKLPK+    + +KKKK++KKSVET
Sbjct: 1  MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61 YKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF 85
          YKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Sbjct: 61 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIF 94

[Close]

BLAST of Cla001864 vs. Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 120.9 bits (302), Expect = 6.5e-27
Identity = 68/94 (72.34%), Postives = 74/94 (78.72%), Query Frame = 1


Query: 1  MAPKAEKKPT----AEEKKS---EKALVEKKLRAEKKLPKD---VSDKKKKKKAKKSVET 60
          MAPK EKKP     AEEKKS   EKA  EKK +A KKLPK+    + +KKKK++KKSVET
Sbjct: 1  MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61 YKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF 85
          YKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Sbjct: 61 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIF 94

[Close]

BLAST of Cla001864 vs. Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 120.9 bits (302), Expect = 6.5e-27
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 1


Query: 4  KAEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVH 63
          KAEKKP AE+K +EKA  EKK +AEKK+ K+ S  KKKK+ KKSVETYKIYIFKVLKQVH
Sbjct: 5  KAEKKP-AEKKPAEKAPAEKKPKAEKKISKEGSSDKKKKRTKKSVETYKIYIFKVLKQVH 64

Query: 64 PDIGISNEAMGIMNSFINDIF 85
          PDIG+S++AMGIMNSFINDIF
Sbjct: 65 PDIGVSSKAMGIMNSFINDIF 84

[Close]

BLAST of Cla001864 vs. Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 120.6 bits (301), Expect = 8.5e-27
Identity = 68/93 (73.12%), Postives = 73/93 (78.49%), Query Frame = 1


Query: 1  MAPKAEKKPT----AEEKKS--EKALVEKKLRAEKKLPKD---VSDKKKKKKAKKSVETY 60
          MAPKAEKKP     AEEKK+  EKA  EKK +A KKLPK+    +  KKKK+ KKSVETY
Sbjct: 1  MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61 KIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF 85
          KIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Sbjct: 61 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIF 93

[Close]

BLAST of Cla001864 vs. TrEMBL
Match: A0A0A0LV55_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_1G132130 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-29
Identity = 73/89 (82.02%), Postives = 78/89 (87.64%), Query Frame = 1


Query: 1  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYI 60
          MAPK     AEKKP AEEKK+EKA  EKK RAEKKLPKD SD KKKK+AKKS+ETYKIYI
Sbjct: 1  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASD-KKKKRAKKSIETYKIYI 60

Query: 61 FKVLKQVHPDIGISNEAMGIMNSFINDIF 85
          FKVLKQVHPDIGIS++AMGIMNSFINDIF
Sbjct: 61 FKVLKQVHPDIGISSKAMGIMNSFINDIF 88

[Close]

BLAST of Cla001864 vs. TrEMBL
Match: A0A0A0LST8_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_1G132680 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.7e-29
Identity = 72/89 (80.90%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 1  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYI 60
          MAPK     AEKKP AEEKK+EK   EKK RAEKKLPKD SD KKKK+AKKS+ETYKIYI
Sbjct: 1  MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASD-KKKKRAKKSIETYKIYI 60

Query: 61 FKVLKQVHPDIGISNEAMGIMNSFINDIF 85
          FKVLKQVHPDIGIS++AMGIMNSFINDIF
Sbjct: 61 FKVLKQVHPDIGISSKAMGIMNSFINDIF 88

[Close]

BLAST of Cla001864 vs. TrEMBL
Match: A0A0D2SV51_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104400 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.8e-28
Identity = 70/88 (79.55%), Postives = 77/88 (87.50%), Query Frame = 1


Query: 1  MAPKAEKKPT----AEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIF 60
          MAPKAEKKP     AEEKK+EKA  EKK RAEKKLPK+  D KKKK++KKS+ETYKIYIF
Sbjct: 1  MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKEAGD-KKKKRSKKSIETYKIYIF 60

Query: 61 KVLKQVHPDIGISNEAMGIMNSFINDIF 85
          KVLKQVHPDIGIS++AMGIMNSFINDIF
Sbjct: 61 KVLKQVHPDIGISSKAMGIMNSFINDIF 87

[Close]

BLAST of Cla001864 vs. TrEMBL
Match: A0A0D2NPV9_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104600 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.1e-28
Identity = 69/88 (78.41%), Postives = 77/88 (87.50%), Query Frame = 1


Query: 1  MAPKAEKKPT----AEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIF 60
          MAPKAEKKP     AEEKK++KA  EKK RAEKKLPK+  D KKKK++KKS+ETYKIYIF
Sbjct: 1  MAPKAEKKPAEKKPAEEKKADKAPAEKKPRAEKKLPKEAGD-KKKKRSKKSIETYKIYIF 60

Query: 61 KVLKQVHPDIGISNEAMGIMNSFINDIF 85
          KVLKQVHPDIGIS++AMGIMNSFINDIF
Sbjct: 61 KVLKQVHPDIGISSKAMGIMNSFINDIF 87

[Close]

BLAST of Cla001864 vs. TrEMBL
Match: A0A0D2S0C9_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104500 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.1e-28
Identity = 69/88 (78.41%), Postives = 77/88 (87.50%), Query Frame = 1


Query: 1  MAPKAEKKPT----AEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIF 60
          MAPKAEKKP     AEEKK+EKA  EKK RAEKKLPK+  D K+KK++KKS+ETYKIYIF
Sbjct: 1  MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKEAGD-KRKKRSKKSIETYKIYIF 60

Query: 61 KVLKQVHPDIGISNEAMGIMNSFINDIF 85
          KVLKQVHPDIGIS++AMGIMNSFINDIF
Sbjct: 61 KVLKQVHPDIGISSKAMGIMNSFINDIF 87

[Close]

BLAST of Cla001864 vs. TAIR10
Match: AT3G46030.1 (AT3G46030.1 Histone superfamily protein)

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-27
Identity = 67/92 (72.83%), Postives = 71/92 (77.17%), Query Frame = 1


Query: 1  MAPKAEKKPTA-----EEKKSEKALVEKKLRAEKKLPKDVS---DKKKKKKAKKSVETYK 60
          MAPKAEKKP       E+ K+EKA  EKK +A KKLPK+     DKKKK K KKSVETYK
Sbjct: 1  MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMK-KKSVETYK 60

Query: 61 IYIFKVLKQVHPDIGISNEAMGIMNSFINDIF 85
          IYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Sbjct: 61 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIF 91

[Close]

BLAST of Cla001864 vs. TAIR10
Match: AT3G53650.1 (AT3G53650.1 Histone superfamily protein)

HSP 1 Score: 118.2 bits (295), Expect = 2.4e-27
Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 1


Query: 1  MAPKAEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLK 60
          MAPKA +K  A +K +EKA  EK  +AEKK+ K+   +KKKKK+KK++ETYKIYIFKVLK
Sbjct: 1  MAPKAAEKKPAGKKPAEKAPAEKLPKAEKKITKEGGSEKKKKKSKKNIETYKIYIFKVLK 60

Query: 61 QVHPDIGISNEAMGIMNSFINDIF 85
          QVHPDIGIS +AMGIMNSFINDIF
Sbjct: 61 QVHPDIGISGKAMGIMNSFINDIF 84

[Close]

BLAST of Cla001864 vs. TAIR10
Match: AT2G37470.1 (AT2G37470.1 Histone superfamily protein)

HSP 1 Score: 117.5 bits (293), Expect = 4.0e-27
Identity = 61/85 (71.76%), Postives = 68/85 (80.00%), Query Frame = 1


Query: 1  MAPKAEKKPTAEEKKSEKALVEKKLRAEKKLPKDVS-DKKKKKKAKKSVETYKIYIFKVL 60
          MAPKA +K  AE+K + KA  EK  +AEKK+ KD    +KKKKK+KKSVETYKIYIFKVL
Sbjct: 1  MAPKAAEKKPAEKKPAGKAPAEKLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFKVL 60

Query: 61 KQVHPDIGISNEAMGIMNSFINDIF 85
          KQVHPD+GIS +AMGIMNSFINDIF
Sbjct: 61 KQVHPDVGISGKAMGIMNSFINDIF 85

[Close]

BLAST of Cla001864 vs. TAIR10
Match: AT5G59910.1 (AT5G59910.1 Histone superfamily protein)

HSP 1 Score: 116.7 bits (291), Expect = 6.9e-27
Identity = 67/97 (69.07%), Postives = 71/97 (73.20%), Query Frame = 1


Query: 1  MAPKAEKKPTA----------EEKKSEKALVEKKLRAEKKLPKDVS---DKKKKKKAKKS 60
          MAPKAEKKP            E+ K+EKA  EKK +A KKLPK+     DKKKK K KKS
Sbjct: 1  MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMK-KKS 60

Query: 61 VETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF 85
          VETYKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Sbjct: 61 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIF 96

[Close]

BLAST of Cla001864 vs. TAIR10
Match: AT1G07790.1 (AT1G07790.1 Histone superfamily protein)

HSP 1 Score: 116.3 bits (290), Expect = 9.0e-27
Identity = 62/94 (65.96%), Postives = 69/94 (73.40%), Query Frame = 1


Query: 1  MAPKAEKKPTA----------EEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVET 60
          MAP+AEKKP            E K +EKA  EKK +A KKLP   +  KKKK++KK+VET
Sbjct: 1  MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVET 60

Query: 61 YKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF 85
          YKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Sbjct: 61 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIF 94

[Close]

BLAST of Cla001864 vs. NCBI nr
Match: gi|778659255|ref|XP_011654070.1| (PREDICTED: histone H2B.7 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-29
Identity = 73/89 (82.02%), Postives = 78/89 (87.64%), Query Frame = 1


Query: 1  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYI 60
          MAPK     AEKKP AEEKK+EKA  EKK RAEKKLPKD SD KKKK+AKKS+ETYKIYI
Sbjct: 1  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASD-KKKKRAKKSIETYKIYI 60

Query: 61 FKVLKQVHPDIGISNEAMGIMNSFINDIF 85
          FKVLKQVHPDIGIS++AMGIMNSFINDIF
Sbjct: 61 FKVLKQVHPDIGISSKAMGIMNSFINDIF 88

[Close]

BLAST of Cla001864 vs. NCBI nr
Match: gi|449443375|ref|XP_004139453.1| (PREDICTED: histone H2B.7-like [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 5.3e-29
Identity = 72/89 (80.90%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 1  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYI 60
          MAPK     AEKKP AEEKK+EK   EKK RAEKKLPKD SD KKKK+AKKS+ETYKIYI
Sbjct: 1  MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASD-KKKKRAKKSIETYKIYI 60

Query: 61 FKVLKQVHPDIGISNEAMGIMNSFINDIF 85
          FKVLKQVHPDIGIS++AMGIMNSFINDIF
Sbjct: 61 FKVLKQVHPDIGISSKAMGIMNSFINDIF 88

[Close]

BLAST of Cla001864 vs. NCBI nr
Match: gi|657986724|ref|XP_008385496.1| (PREDICTED: probable histone H2B.1 [Malus domestica])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 69/88 (78.41%), Postives = 77/88 (87.50%), Query Frame = 1


Query: 1  MAPKAEKKPT----AEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIF 60
          MAPKAEKKP     AEEKK+EKA  EKK RAEK LPK+ + +KKKK++KKSVETYKIYIF
Sbjct: 1  MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKNLPKEAAGEKKKKRSKKSVETYKIYIF 60

Query: 61 KVLKQVHPDIGISNEAMGIMNSFINDIF 85
          KVLKQVHPDIGIS++AMGIMNSFINDIF
Sbjct: 61 KVLKQVHPDIGISSKAMGIMNSFINDIF 88

[Close]

BLAST of Cla001864 vs. NCBI nr
Match: gi|823172029|ref|XP_012484994.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 132.9 bits (333), Expect = 2.6e-28
Identity = 70/88 (79.55%), Postives = 77/88 (87.50%), Query Frame = 1


Query: 1  MAPKAEKKPT----AEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIF 60
          MAPKAEKKP     AEEKK+EKA  EKK RAEKKLPK+  D KKKK++KKS+ETYKIYIF
Sbjct: 1  MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKEAGD-KKKKRSKKSIETYKIYIF 60

Query: 61 KVLKQVHPDIGISNEAMGIMNSFINDIF 85
          KVLKQVHPDIGIS++AMGIMNSFINDIF
Sbjct: 61 KVLKQVHPDIGISSKAMGIMNSFINDIF 87

[Close]

BLAST of Cla001864 vs. NCBI nr
Match: gi|694332634|ref|XP_009356943.1| (PREDICTED: probable histone H2B.1 [Pyrus x bretschneideri])

HSP 1 Score: 132.9 bits (333), Expect = 2.6e-28
Identity = 69/88 (78.41%), Postives = 77/88 (87.50%), Query Frame = 1


Query: 1  MAPKAEKKPT----AEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIF 60
          MAPKAEKKP     AEEKK+EKA  EKK RAEK LPK+ + +KKKK++KKSVETYKIYIF
Sbjct: 1  MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKNLPKEGAGEKKKKRSKKSVETYKIYIF 60

Query: 61 KVLKQVHPDIGISNEAMGIMNSFINDIF 85
          KVLKQVHPDIGIS++AMGIMNSFINDIF
Sbjct: 61 KVLKQVHPDIGISSKAMGIMNSFINDIF 88

The following BLAST results are available for this feature:

BLAST of Cla001864 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2B1_SOLLC	4.5e-28	73.86	Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4	[more]
H2B2_MEDTR	6.5e-27	72.34	Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3	[more]
H2B1_MEDTR	6.5e-27	72.34	Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3	[more]
H2B3_MEDTR	6.5e-27	76.54	Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3	[more]
H2B_GOSHI	8.5e-27	73.12	Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3	[more]

BLAST of Cla001864 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV55_CUCSA	1.3e-29	82.02	Histone H2B OS=Cucumis sativus GN=Csa_1G132130 PE=3 SV=1	[more]
A0A0A0LST8_CUCSA	3.7e-29	80.90	Histone H2B OS=Cucumis sativus GN=Csa_1G132680 PE=3 SV=1	[more]
A0A0D2SV51_GOSRA	1.8e-28	79.55	Histone H2B OS=Gossypium raimondii GN=B456_006G104400 PE=3 SV=1	[more]
A0A0D2NPV9_GOSRA	4.1e-28	78.41	Histone H2B OS=Gossypium raimondii GN=B456_006G104600 PE=3 SV=1	[more]
A0A0D2S0C9_GOSRA	4.1e-28	78.41	Histone H2B OS=Gossypium raimondii GN=B456_006G104500 PE=3 SV=1	[more]

BLAST of Cla001864 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46030.1	1.8e-27	72.83	Histone superfamily protein	[more]
AT3G53650.1	2.4e-27	70.24	Histone superfamily protein	[more]
AT2G37470.1	4.0e-27	71.76	Histone superfamily protein	[more]
AT5G59910.1	6.9e-27	69.07	Histone superfamily protein	[more]
AT1G07790.1	9.0e-27	65.96	Histone superfamily protein	[more]

BLAST of Cla001864 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778659255\|ref\|XP_011654070.1\|	1.8e-29	82.02	PREDICTED: histone H2B.7 [Cucumis sativus]	[more]
gi\|449443375\|ref\|XP_004139453.1\|	5.3e-29	80.90	PREDICTED: histone H2B.7-like [Cucumis sativus]	[more]
gi\|657986724\|ref\|XP_008385496.1\|	1.2e-28	78.41	PREDICTED: probable histone H2B.1 [Malus domestica]	[more]
gi\|823172029\|ref\|XP_012484994.1\|	2.6e-28	79.55	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]
gi\|694332634\|ref\|XP_009356943.1\|	2.6e-28	78.41	PREDICTED: probable histone H2B.1 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000558	Histone_H2B
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001864	Cla001864.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 51..69 score: 2.4E-15coord: 70..84 score: 2.4
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 8..84 score: 1.5
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 41..84 score: 5.
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 6..84 score: 1.
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 23..84 score: 9.9
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 26..84 score: 2.97
None	No IPR available	unknown	Coil	Coil	coord: 11..31 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001864	Cla97C01G012790	Watermelon (97103) v2	wmwmbB248
Cla001864	ClCG01G013820	Watermelon (Charleston Gray)	wcgwmB156

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001864	Melon (DHL92) v3.5.1	mewmB169
Cla001864	Cucumber (Chinese Long) v2	cuwmB054
Cla001864	Cucurbita pepo (Zucchini)	cpewmB515
Cla001864	Cucurbita pepo (Zucchini)	cpewmB805
Cla001864	Bottle gourd (USVL1VR-Ls)	lsiwmB263
Cla001864	Cucumber (Gy14) v2	cgybwmB054
Cla001864	Melon (DHL92) v3.6.1	medwmB165
Cla001864	Silver-seed gourd	carwmB0157
Cla001864	Cucumber (Chinese Long) v3	cucwmB060
Cla001864	Wax gourd	wgowmB499
Cla001864	Cucumber (Gy14) v1	cgywmB391
Cla001864	Cucurbita maxima (Rimu)	cmawmB165
Cla001864	Cucurbita maxima (Rimu)	cmawmB204
Cla001864	Cucurbita moschata (Rifu)	cmowmB151
Cla001864	Cucurbita moschata (Rifu)	cmowmB191