Cla001859 (gene) Watermelon (97103) v1

NameCla001859
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 11975466 .. 11976032 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCGATCCAAAGGCATATACTGGCAAAGGCAGGTTATGATTTCAAGGCTCATACTGAGTTTAAAACTCTGAAAATATCGGAGGAGAGACCGGAACTCTCCCCAACTCAAAGGAAGCTTCAGAAGGAAGGGTATACTATCCCTTATTCAAGAGCCGGGCTTGGATATAATCCCCCGGAGCTGATTCGTATAACCAGAAAAGGAAAAGCAAAGATTTCAAATACATGTCACATTACTGTGGAAGAAAGCAATGACTCTAAAAAAGACAAGGGAAGTGAAGGTCAGAGAATGTCTGCCTTTAGTCGCATTATTCCTCCTGTGGCACGTCCTTCGGTTTTTCAAAGGCTGAGTATGCCTGGGGGTGAGAATGAAGAACAACCTTCAACTTCTGGCCATACCCGACTTTCTGCGTTTCAGAGGTTAAGTGTAAACCCTCGGGAGACAAATAATGTGTGCTCAAATATGACCCCGCGAACATCTGCTTTCGATAAGTGTCACCACAGCAAGAAGTCAAAAATGATCCCTTACATCGATCTCCAGCAAAGCATGCGAGATAAAAAGTGA

mRNA sequence

ATGGCTTCGATCCAAAGGCATATACTGGCAAAGGCAGGTTATGATTTCAAGGCTCATACTGAGTTTAAAACTCTGAAAATATCGGAGGAGAGACCGGAACTCTCCCCAACTCAAAGGAAGCTTCAGAAGGAAGGGTATACTATCCCTTATTCAAGAGCCGGGCTTGGATATAATCCCCCGGAGCTGATTCGTATAACCAGAAAAGGAAAAGCAAAGATTTCAAATACATGTCACATTACTGTGGAAGAAAGCAATGACTCTAAAAAAGACAAGGGAAGTGAAGGTCAGAGAATGTCTGCCTTTAGTCGCATTATTCCTCCTGTGGCACGTCCTTCGGTTTTTCAAAGGCTGAGTATGCCTGGGGGTGAGAATGAAGAACAACCTTCAACTTCTGGCCATACCCGACTTTCTGCGTTTCAGAGGTTAAGTGTAAACCCTCGGGAGACAAATAATGTGTGCTCAAATATGACCCCGCGAACATCTGCTTTCGATAAGTGTCACCACAGCAAGAAGTCAAAAATGATCCCTTACATCGATCTCCAGCAAAGCATGCGAGATAAAAAGTGA

Coding sequence (CDS)

ATGGCTTCGATCCAAAGGCATATACTGGCAAAGGCAGGTTATGATTTCAAGGCTCATACTGAGTTTAAAACTCTGAAAATATCGGAGGAGAGACCGGAACTCTCCCCAACTCAAAGGAAGCTTCAGAAGGAAGGGTATACTATCCCTTATTCAAGAGCCGGGCTTGGATATAATCCCCCGGAGCTGATTCGTATAACCAGAAAAGGAAAAGCAAAGATTTCAAATACATGTCACATTACTGTGGAAGAAAGCAATGACTCTAAAAAAGACAAGGGAAGTGAAGGTCAGAGAATGTCTGCCTTTAGTCGCATTATTCCTCCTGTGGCACGTCCTTCGGTTTTTCAAAGGCTGAGTATGCCTGGGGGTGAGAATGAAGAACAACCTTCAACTTCTGGCCATACCCGACTTTCTGCGTTTCAGAGGTTAAGTGTAAACCCTCGGGAGACAAATAATGTGTGCTCAAATATGACCCCGCGAACATCTGCTTTCGATAAGTGTCACCACAGCAAGAAGTCAAAAATGATCCCTTACATCGATCTCCAGCAAAGCATGCGAGATAAAAAGTGA

Protein sequence

MASIQRHILAKAGYDFKAHTEFKTLKISEERPELSPTQRKLQKEGYTIPYSRAGLGYNPPELIRITRKGKAKISNTCHITVEESNDSKKDKGSEGQRMSAFSRIIPPVARPSVFQRLSMPGGENEEQPSTSGHTRLSAFQRLSVNPRETNNVCSNMTPRTSAFDKCHHSKKSKMIPYIDLQQSMRDKK
BLAST of Cla001859 vs. TrEMBL
Match: A5C5C0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007094 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.6e-08
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = 1

Query: 8   ILAKAGYDFKAHTEFKTLK---ISEERPELSPTQRKLQKEGYTIPYSRAGLGYNPPELIR 67
           +LAKAGYDF + ++   L       +   L+ TQRKL+++GY + +S  GLG+ P E I+
Sbjct: 272 LLAKAGYDFISSSQLGELSPETTGXKMHGLNETQRKLKQQGYAVKHSMEGLGFIPFEPIK 331

Query: 68  ITRKGKAKISNTCHITVEESNDSKKDKGSEGQRMSAFSRIIPPVARPSVFQRL 118
           I+ K K   ++T HI VE  ++S     +   ++S F +I  P+ +  VF RL
Sbjct: 332 ISTKTKKTKASTQHIIVEYMDES--SXSNSPPQISVFDQIEAPIVQALVFTRL 382

BLAST of Cla001859 vs. TrEMBL
Match: A5AZ12_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041625 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.2e-07
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1

Query: 29  EERPELSPTQRKLQKEGYTIPYSRAGLGYNPPELIRITRKGKAKISNTCHITVEESNDSK 88
           E+  +L+ TQ+KL+++GY +  SRAGLG+ P + I+I+ K K   ++T HITVE   D +
Sbjct: 111 EKMYDLNETQKKLKQQGYVVKPSRAGLGFVPFKPIKISFKTKKTKASTQHITVE---DME 170

Query: 89  KDKGSEG-QRMSAFSRIIPPVARPSVFQRLS 119
           K  GS    R+  F  I   + R SVF RLS
Sbjct: 171 KSSGSNSLPRILVFDXIEAXITRASVFTRLS 198

BLAST of Cla001859 vs. NCBI nr
Match: gi|659124357|ref|XP_008462116.1| (PREDICTED: uncharacterized protein LOC103500544 [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 3.9e-40
Identity = 86/158 (54.43%), Postives = 111/158 (70.25%), Query Frame = 1

Query: 8   ILAKAGYDFKAHTEFKTLKISEERPELSPTQRKLQKEGYTIPYSRAGLGYNPPELIRITR 67
           ++AKAGYDF   TE K++KI +ERPELSPTQ+KLQK+GY+IP S+AG+GY   E +RIT 
Sbjct: 541 LMAKAGYDFTTRTELKSVKIFDERPELSPTQKKLQKQGYSIPNSKAGIGYQSSEPVRITG 600

Query: 68  KGKAKISNTCHITVEESNDSKKDKGSEGQRMSAFSRIIPPVARPSVFQRLSMPGGENEEQ 127
           KGK K++NTCHITVEES DSK+ K   GQR S F RI     RPSVFQR+S+   ++  Q
Sbjct: 601 KGKTKVANTCHITVEESKDSKEGKKDRGQRSSVFDRIAFSAIRPSVFQRVSISITKDSNQ 660

Query: 128 PSTSGHTRLSAFQRLSVNPRETNNVCSNMTPRTSAFDK 166
            ST   TRLS FQRL+ + ++  ++    T R S F +
Sbjct: 661 VSTCSSTRLSTFQRLNTSVKKVQSISPTPTTRKSTFKR 698

BLAST of Cla001859 vs. NCBI nr
Match: gi|778660504|ref|XP_011656345.1| (PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.9e-34
Identity = 86/168 (51.19%), Postives = 112/168 (66.67%), Query Frame = 1

Query: 8   ILAKAGYDFKAHTEFKTLKISEERPELSPTQRKLQKEGYTIPYSRAGLGYNPPELIRITR 67
           ++AKAGYDF AHTEFK+L+I  +RPELS TQ+KL +EG++IP SR GLGY  PE IRIT+
Sbjct: 503 LMAKAGYDFTAHTEFKSLEI-HDRPELSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITK 562

Query: 68  KGKAKISNTCHITVEESNDSKKDKGSEGQRMSAFSRIIPPVARPSVFQRLSMPGGENEEQ 127
           KGK K+ +  HIT+EE +D+   K  + QR+S F RI P VARP VF+RLSM   E E  
Sbjct: 563 KGKEKVVDINHITIEE-DDNTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERL 622

Query: 128 PSTSGHTRLSAFQRLSVNPRETNNVCSNM-TPRTSAFDKCHHSKKSKM 175
            S     R S F+RL+  P +  + C  + T R SAF++   SKK  +
Sbjct: 623 QSVPNLERHSVFRRLTTTPIKEESTCHALTTTRPSAFERLGVSKKKNV 668

BLAST of Cla001859 vs. NCBI nr
Match: gi|659087156|ref|XP_008444300.1| (PREDICTED: uncharacterized protein LOC103487667 [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 5.4e-13
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 1

Query: 52  RAGLGYNPPELIRITRKGKAKISNTCHITVEESNDSKKDKGSEGQRMSAFSRIIPPVARP 111
           R GLGY  PE IRIT KGK K+ ++ HI V++  DS ++K  + QR SAF RI P VAR 
Sbjct: 3   RKGLGYKLPEPIRITIKGKEKVVDSKHIVVKKV-DSMEEKEGDSQRTSAFDRISPHVART 62

Query: 112 SVFQRLSMPGGENEEQPSTSGHTRLSAFQRLSV 145
            +F+RLSM   E ++  STS   R S FQRL++
Sbjct: 63  PLFERLSMTEAERKDHQSTSNLDRRSTFQRLTM 94

BLAST of Cla001859 vs. NCBI nr
Match: gi|848874799|ref|XP_012837904.1| (PREDICTED: uncharacterized protein LOC105958447 [Erythranthe guttata])

HSP 1 Score: 73.6 bits (179), Expect = 4.3e-10
Identity = 54/152 (35.53%), Postives = 74/152 (48.68%), Query Frame = 1

Query: 7    HILAKAGYDFKAHTEFKTLK---ISEERPELSPTQRKLQKEGYTIPYSRAGLGYNPPELI 66
            ++LAK+GY+F   +    LK     E+   L+ TQR L+K+G+ +   R GLG+ P E +
Sbjct: 868  NLLAKSGYNFSNPSRLGELKPELTGEKIHGLNETQRTLRKQGFRVNQPRVGLGFTPIEPV 927

Query: 67   RITRKGKAKISNTCHITVEESNDSKKDKGSEGQRMSAFSRIIPP-------------VAR 126
            RI    K +  N  HIT++   + KK  G    R+SAF RI  P             V R
Sbjct: 928  RIRVSRKGECPNVHHITIKGVGNQKKTSG----RISAFDRIGAPTTQSSVFERLDTHVTR 987

Query: 127  PSVFQRLSMPGGENEEQPSTSGHTRLSAFQRL 143
            PSVF+RL      +      S  TR S F RL
Sbjct: 988  PSVFERLGPSNNVSSVHDRISTDTR-SVFSRL 1014

BLAST of Cla001859 vs. NCBI nr
Match: gi|848915474|ref|XP_012855476.1| (PREDICTED: uncharacterized protein LOC105974863 [Erythranthe guttata])

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 49/153 (32.03%), Postives = 75/153 (49.02%), Query Frame = 1

Query: 7    HILAKAGYDFKAHTEFKTLK---ISEERPELSPTQRKLQKEGYTIPYSRAGLGYNPPELI 66
            ++LAK+GY+F   +    LK     E+   L+ TQR L+++G+ +   + GLG+ P E +
Sbjct: 957  NLLAKSGYNFSNPSRLGELKPELTGEKIHGLNETQRTLRRQGFRVNQPKVGLGFTPIEPV 1016

Query: 67   RITRKGKAKISNTCHITVEESNDSKKDKG---------SEGQRMSAFSRIIPPVARPSVF 126
            RI    K + +N  HIT++   +  K  G         +   R S F R+   VARPS+F
Sbjct: 1017 RIRVSRKGECANVHHITIKGVGNKNKTSGRISAFDRIGAPTTRSSVFERLDAHVARPSIF 1076

Query: 127  QRLSMPGGENEEQPSTSGHTRLSAFQRLSVNPR 148
            +RL      +      S  TR S F RL  + R
Sbjct: 1077 ERLGPSNNVSSVHDRISTETR-SVFSRLGNHNR 1108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A5C5C0_VITVI3.6e-0836.28Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007094 PE=4 SV=1[more]
A5AZ12_VITVI5.2e-0742.86Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041625 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659124357|ref|XP_008462116.1|3.9e-4054.43PREDICTED: uncharacterized protein LOC103500544 [Cucumis melo][more]
gi|778660504|ref|XP_011656345.1|1.9e-3451.19PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus][more]
gi|659087156|ref|XP_008444300.1|5.4e-1350.54PREDICTED: uncharacterized protein LOC103487667 [Cucumis melo][more]
gi|848874799|ref|XP_012837904.1|4.3e-1035.53PREDICTED: uncharacterized protein LOC105958447 [Erythranthe guttata][more]
gi|848915474|ref|XP_012855476.1|1.2e-0932.03PREDICTED: uncharacterized protein LOC105974863 [Erythranthe guttata][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001859Cla001859.1mRNA