Cla001858 (gene) Watermelon (97103) v1

Overview
NameCla001858
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 11970788 .. 11971159 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCCTTATAATTTGGACTCATCCATTGACAAGGTTGGTACTTCTACATTACCAGTAGCTGAAACAATTGAACCGCCCTTACGACCTCGTGCTATTTTAGAGGATGTTCGACGCGGCAAAATGAAAGTAGGTAGTGAGGACGTTGGAGTTTTAAACTCTCCATTTGAAGAAGTTGGTTGTTCTAAAGCCCTCTTCACAGAGAAAGTCATGCCTCCTCCTGTTCCACTAAGAATTTCGGAACCGACTCAACGCATCTGTAAAAAGACGAATGTTGGGAATCCCGAGGCTTCTCTATACTGTGGCGATGTAGTAGTTTCGAATTTTTATCGACAAGCAGTGCTATCTTTGTGGGAAAGCATTCGGGATTAA

mRNA sequence

ATGGGGCCTTATAATTTGGACTCATCCATTGACAAGGTTGGTACTTCTACATTACCAGTAGCTGAAACAATTGAACCGCCCTTACGACCTCGTGCTATTTTAGAGGATGTTCGACGCGGCAAAATGAAAGTAGGTAGTGAGGACGTTGGAGTTTTAAACTCTCCATTTGAAGAAGTTGGTTGTTCTAAAGCCCTCTTCACAGAGAAAGTCATGCCTCCTCCTGTTCCACTAAGAATTTCGGAACCGACTCAACGCATCTGTAAAAAGACGAATGTTGGGAATCCCGAGGCTTCTCTATACTGTGGCGATGTAGTAGTTTCGAATTTTTATCGACAAGCAGTGCTATCTTTGTGGGAAAGCATTCGGGATTAA

Coding sequence (CDS)

ATGGGGCCTTATAATTTGGACTCATCCATTGACAAGGTTGGTACTTCTACATTACCAGTAGCTGAAACAATTGAACCGCCCTTACGACCTCGTGCTATTTTAGAGGATGTTCGACGCGGCAAAATGAAAGTAGGTAGTGAGGACGTTGGAGTTTTAAACTCTCCATTTGAAGAAGTTGGTTGTTCTAAAGCCCTCTTCACAGAGAAAGTCATGCCTCCTCCTGTTCCACTAAGAATTTCGGAACCGACTCAACGCATCTGTAAAAAGACGAATGTTGGGAATCCCGAGGCTTCTCTATACTGTGGCGATGTAGTAGTTTCGAATTTTTATCGACAAGCAGTGCTATCTTTGTGGGAAAGCATTCGGGATTAA

Protein sequence

MGPYNLDSSIDKVGTSTLPVAETIEPPLRPRAILEDVRRGKMKVGSEDVGVLNSPFEEVGCSKALFTEKVMPPPVPLRISEPTQRICKKTNVGNPEASLYCGDVVVSNFYRQAVLSLWESIRD
Homology
[Close]
BLAST of Cla001858 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-15
Identity = 51/122 (41.80%), Postives = 73/122 (59.84%), Query Frame = 1 

Query: 2   GPYNLDSSIDKVGTSTLPVAETIEPPLRPRAILEDVRRGKMKVGSEDVGVLNSPFEEVGC 61
           GP+ +DS+ ++VGTS  PV +  E  L P A+ E++RRGKM VG +D+   +S  +E  C
Sbjct: 399 GPHVVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVGGKDLESHSS--KEGVC 458

Query: 62  SKALFTEKVMPPPVPLRISEPTQRICKKTNVGNPEASLYCGDVVVSNFYRQAVLSLWESI 121
            KA F  KV     PL+ SE       K  + NPE S + G+ VVSNF+++  L +WE I
Sbjct: 459 PKA-FLPKVSSTHAPLKFSELPLGASNKQTMRNPEPSQWVGEKVVSNFFQKTALCMWEDI 517

Query: 122 RD 124
           +D
Sbjct: 519 QD 517

[Close]
BLAST of Cla001858 vs. TrEMBL
Match: A0A0A0L2B5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G444640 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-10
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 1 

Query: 2   GPYNLDSSIDKVGTSTLPVAETIEPPLRPRAILEDVRRGKMKVGSEDVGVLNSPFEEVGC 61
           GP+  D++I++V     P A+++E  LRP A+LE++R+GKMKVG +D+    +P    G 
Sbjct: 11  GPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDI---KNPPSRGGV 70

Query: 62  SKALFTEKVMPPPVPLRISEPTQRICKKTNVGNPEASLYCGDVVVSNFY 111
              + + K      PL+I EP      K  V +PE S + G+ VVSNF+
Sbjct: 71  CPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 116

[Close]
BLAST of Cla001858 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 89.7 bits (221), Expect = 3.8e-15
Identity = 51/122 (41.80%), Postives = 73/122 (59.84%), Query Frame = 1 

Query: 2   GPYNLDSSIDKVGTSTLPVAETIEPPLRPRAILEDVRRGKMKVGSEDVGVLNSPFEEVGC 61
           GP+ +DS+ ++VGTS  PV +  E  L P A+ E++RRGKM VG +D+   +S  +E  C
Sbjct: 399 GPHVVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVGGKDLESHSS--KEGVC 458

Query: 62  SKALFTEKVMPPPVPLRISEPTQRICKKTNVGNPEASLYCGDVVVSNFYRQAVLSLWESI 121
            KA F  KV     PL+ SE       K  + NPE S + G+ VVSNF+++  L +WE I
Sbjct: 459 PKA-FLPKVSSTHAPLKFSELPLGASNKQTMRNPEPSQWVGEKVVSNFFQKTALCMWEDI 517

Query: 122 RD 124
           +D
Sbjct: 519 QD 517

[Close]
BLAST of Cla001858 vs. NCBI nr
Match: gi|700199594|gb|KGN54752.1| (hypothetical protein Csa_4G444640 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-10
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 1 

Query: 2   GPYNLDSSIDKVGTSTLPVAETIEPPLRPRAILEDVRRGKMKVGSEDVGVLNSPFEEVGC 61
           GP+  D++I++V     P A+++E  LRP A+LE++R+GKMKVG +D+    +P    G 
Sbjct: 11  GPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDI---KNPPSRGGV 70

Query: 62  SKALFTEKVMPPPVPLRISEPTQRICKKTNVGNPEASLYCGDVVVSNFY 111
              + + K      PL+I EP      K  V +PE S + G+ VVSNF+
Sbjct: 71  CPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 116

The following BLAST results are available for this feature:
BLAST of Cla001858 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB9_CUCME2.6e-1541.80Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0L2B5_CUCSA2.5e-1037.61Uncharacterized protein OS=Cucumis sativus GN=Csa_4G444640 PE=4 SV=1[more]
BLAST of Cla001858 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136292|gb|ADN34118.1|3.8e-1541.80hypothetical protein [Cucumis melo subsp. melo][more]
gi|700199594|gb|KGN54752.1|3.6e-1037.61hypothetical protein Csa_4G444640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001858Cla001858.1mRNA