Cla001839 (gene) Watermelon (97103) v1

Overview
NameCla001839
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr9 : 28586951 .. 28587653 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACACTCATTTGTTGGACCTTCCAGTTGAAGGTTTTTTTAAATGAAAAATAATTCTCTCTATTAACTCTTTTATCTTCGATTTTCAGAAGGATATGAGACGTTAGCTCGGGCAAAAGAAGGATCATCCATGAGCTTGGACCATGGAAATTCTGACGTCCACAAGGGAAATGGTTTGTTGTCTGATGTTCAAAATCCTGGTGTGGGTTCATTGTTCACAAATCAACCCGAAGTTGAAATCACCAGTGGTGGAACTGATACATATGATATGTTTGCTGACGAAGACGAGCATGCAGTTCCATCTTCTAATGAAAATTTAGTAGCTGATGCCAATGGAGTTGATCGACAAACTCCCAATAACCTTAACCCTATTTCTGAGAGTACGCCTTTCCATCCCATGGAAACGATTTAGAAAGTTCCACTTAATTTTGTTAATTATTATCTTGCTGATTAACTTTCTTGTTTATTGTTTGGCCTGCAGGTGAAGCTTCACAGAATGACTATGTTTATGATGAATCCTCGGGGTACATTCTCTCTCTTCACTCTTATGGATTCAGGGGACCAAATTGGACTCTCCATTTCTGCTGTTTATTTCTTTGGCAGGGACATTTTGAAAGGAATGTTAAACCTCCTAGTTGTTTACGGATGCAAGGAGGATGTGACGGTGTGTGGGCCCTAGGCTTAGGGTTGCCAGTAAAGTAG

mRNA sequence

ATGAACACTCATTTGTTGGACCTTCCAGTTGAAGAAGGATATGAGACGTTAGCTCGGGCAAAAGAAGGATCATCCATGAGCTTGGACCATGGAAATTCTGACGTCCACAAGGGAAATGGTTTGTTGTCTGATGTTCAAAATCCTGGTGTGGGTTCATTGTTCACAAATCAACCCGAAGTTGAAATCACCAGTGGTGGAACTGATACATATGATATGTTTGCTGACGAAGACGAGCATGCAGTTCCATCTTCTAATGAAAATTTAGTAGCTGATGCCAATGGAGTTGATCGACAAACTCCCAATAACCTTAACCCTATTTCTGAGAGTGAAGCTTCACAGAATGACTATGTTTATGATGAATCCTCGGGGTACATTCTCTCTCTTCACTCTTATGGATTCAGGGGACCAAATTGGACTCTCCATTTCTGCTGTTTATTTCTTTGGCAGGGACATTTTGAAAGGAATGTTAAACCTCCTAGTTGTTTACGGATGCAAGGAGGATGTGACGGTGTGTGGGCCCTAGGCTTAGGGTTGCCAGTAAAGTAG

Coding sequence (CDS)

ATGAACACTCATTTGTTGGACCTTCCAGTTGAAGAAGGATATGAGACGTTAGCTCGGGCAAAAGAAGGATCATCCATGAGCTTGGACCATGGAAATTCTGACGTCCACAAGGGAAATGGTTTGTTGTCTGATGTTCAAAATCCTGGTGTGGGTTCATTGTTCACAAATCAACCCGAAGTTGAAATCACCAGTGGTGGAACTGATACATATGATATGTTTGCTGACGAAGACGAGCATGCAGTTCCATCTTCTAATGAAAATTTAGTAGCTGATGCCAATGGAGTTGATCGACAAACTCCCAATAACCTTAACCCTATTTCTGAGAGTGAAGCTTCACAGAATGACTATGTTTATGATGAATCCTCGGGGTACATTCTCTCTCTTCACTCTTATGGATTCAGGGGACCAAATTGGACTCTCCATTTCTGCTGTTTATTTCTTTGGCAGGGACATTTTGAAAGGAATGTTAAACCTCCTAGTTGTTTACGGATGCAAGGAGGATGTGACGGTGTGTGGGCCCTAGGCTTAGGGTTGCCAGTAAAGTAG

Protein sequence

MNTHLLDLPVEEGYETLARAKEGSSMSLDHGNSDVHKGNGLLSDVQNPGVGSLFTNQPEVEITSGGTDTYDMFADEDEHAVPSSNENLVADANGVDRQTPNNLNPISESEASQNDYVYDESSGYILSLHSYGFRGPNWTLHFCCLFLWQGHFERNVKPPSCLRMQGGCDGVWALGLGLPVK
Homology
[Close]
BLAST of Cla001839 vs. TrEMBL
Match: A0A0A0K401_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062800 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-49
Identity = 105/132 (79.55%), Postives = 111/132 (84.09%), Query Frame = 1 

Query: 12  EGYETLARAKEGSSMSLDHGNSDVHKGNGLLSDVQNPGVGSLFTNQPEVEITSGGTDTYD 71
           EGYE LARAKEGSSMSL HGNSD +KGNGLLSDVQ+PGVGSLFTNQPEVEITS GTDTYD
Sbjct: 250 EGYEKLARAKEGSSMSLHHGNSDANKGNGLLSDVQDPGVGSLFTNQPEVEITSSGTDTYD 309

Query: 72  MFADEDEHAVPSSNENLVADANGVDRQTPNNLNPISESEASQNDYVYDESSGYILSLHSY 131
           MFADEDEHA PSSNENLVAD NG+ +Q P+NLNP SESEASQNDYVYDESSGY  S  S 
Sbjct: 310 MFADEDEHADPSSNENLVADGNGIKQQIPSNLNPNSESEASQNDYVYDESSGYYYS-SSL 369

Query: 132 GFRGPNWTLHFC 144
           G+     T  FC
Sbjct: 370 GYYYDPSTGLFC 380

[Close]
BLAST of Cla001839 vs. TrEMBL
Match: M5VVX1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006084mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 60/132 (45.45%), Postives = 78/132 (59.09%), Query Frame = 1 

Query: 12  EGYETLARAK-EGSSMSLDHGNSDVHKGNGLLSDVQNPGV----------GSLFTNQPEV 71
           EGYE+LARA+ EG+S S   G S +    G  SDV +PGV          GS  +N P  
Sbjct: 254 EGYESLARARREGTSTSAYQGKSVLSMEWGTSSDVTSPGVPSSILPETAVGSSNSNAPAA 313

Query: 72  EITSGGTDTYDMFADEDEHAV--PSSNENLVA---DANGVDRQTPNNLNPISESEASQND 128
           E TS G D +D+FA++DEH +  PSS  + V    +++GV   + NNLN  SE+   QND
Sbjct: 314 ETTSNGADAFDIFAEDDEHVIAKPSSEGSDVICGPNSDGVSSLSSNNLNAYSENGVLQND 373

[Close]
BLAST of Cla001839 vs. TrEMBL
Match: A0A0D2RJJ6_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G2198002 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-11
Identity = 51/127 (40.16%), Postives = 73/127 (57.48%), Query Frame = 1 

Query: 12  EGYETLARAKEGS-SMSLDHGNSDVHKGNGLLSDVQNPG---------VGSLFTNQPEVE 71
           EGYE LA A+  S S ++   NSD + G+ +L+D+ NPG         VG+  ++    E
Sbjct: 226 EGYEKLALARGKSISANVVLENSDPNLGSDMLTDINNPGTASVLPDPAVGTSNSSLTAAE 285

Query: 72  ITSGGTDTYDMFAD-EDEHAVPSSNENLVADANGVDRQTPNNLNPISESEASQNDYVYDE 128
           ++S   D YDMFAD ED+  +  S+E   A++N   + + N +N  SE+    NDYVYDE
Sbjct: 286 VSSDAADGYDMFADDEDDENLKQSSE---ANSNAFIQSSSNAVNTFSETGDVLNDYVYDE 345

[Close]
BLAST of Cla001839 vs. TrEMBL
Match: A0A0D2NGP5_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G2198002 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-11
Identity = 51/127 (40.16%), Postives = 73/127 (57.48%), Query Frame = 1 

Query: 12  EGYETLARAKEGS-SMSLDHGNSDVHKGNGLLSDVQNPG---------VGSLFTNQPEVE 71
           EGYE LA A+  S S ++   NSD + G+ +L+D+ NPG         VG+  ++    E
Sbjct: 164 EGYEKLALARGKSISANVVLENSDPNLGSDMLTDINNPGTASVLPDPAVGTSNSSLTAAE 223

Query: 72  ITSGGTDTYDMFAD-EDEHAVPSSNENLVADANGVDRQTPNNLNPISESEASQNDYVYDE 128
           ++S   D YDMFAD ED+  +  S+E   A++N   + + N +N  SE+    NDYVYDE
Sbjct: 224 VSSDAADGYDMFADDEDDENLKQSSE---ANSNAFIQSSSNAVNTFSETGDVLNDYVYDE 283

[Close]
BLAST of Cla001839 vs. TrEMBL
Match: A0A0D2RR53_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G2198002 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-11
Identity = 51/127 (40.16%), Postives = 73/127 (57.48%), Query Frame = 1 

Query: 12  EGYETLARAKEGS-SMSLDHGNSDVHKGNGLLSDVQNPG---------VGSLFTNQPEVE 71
           EGYE LA A+  S S ++   NSD + G+ +L+D+ NPG         VG+  ++    E
Sbjct: 226 EGYEKLALARGKSISANVVLENSDPNLGSDMLTDINNPGTASVLPDPAVGTSNSSLTAAE 285

Query: 72  ITSGGTDTYDMFAD-EDEHAVPSSNENLVADANGVDRQTPNNLNPISESEASQNDYVYDE 128
           ++S   D YDMFAD ED+  +  S+E   A++N   + + N +N  SE+    NDYVYDE
Sbjct: 286 VSSDAADGYDMFADDEDDENLKQSSE---ANSNAFIQSSSNAVNTFSETGDVLNDYVYDE 345

[Close]
BLAST of Cla001839 vs. NCBI nr
Match: gi|659110414|ref|XP_008455212.1| (PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 homolog [Cucumis melo])

HSP 1 Score: 207.6 bits (527), Expect = 1.8e-50
Identity = 108/132 (81.82%), Postives = 113/132 (85.61%), Query Frame = 1 

Query: 12  EGYETLARAKEGSSMSLDHGNSDVHKGNGLLSDVQNPGVGSLFTNQPEVEITSGGTDTYD 71
           EGYETLARAKEGSS+SL HGNSD +KGNGLLSDVQNPGVGSLFTNQPEVEITS GTDTYD
Sbjct: 250 EGYETLARAKEGSSLSLHHGNSDANKGNGLLSDVQNPGVGSLFTNQPEVEITSSGTDTYD 309

Query: 72  MFADEDEHAVPSSNENLVADANGVDRQTPNNLNPISESEASQNDYVYDESSGYILSLHSY 131
           MFADEDEHA PSSNENLVADANGVD+Q P+NLN  SESEASQNDYVYDESSGY  S  S 
Sbjct: 310 MFADEDEHADPSSNENLVADANGVDQQFPSNLNLNSESEASQNDYVYDESSGYYYS-SSL 369

Query: 132 GFRGPNWTLHFC 144
           G+     T  FC
Sbjct: 370 GYYYDPSTGLFC 380

[Close]
BLAST of Cla001839 vs. NCBI nr
Match: gi|449438191|ref|XP_004136873.1| (PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 homolog [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 2.0e-49
Identity = 105/132 (79.55%), Postives = 111/132 (84.09%), Query Frame = 1 

Query: 12  EGYETLARAKEGSSMSLDHGNSDVHKGNGLLSDVQNPGVGSLFTNQPEVEITSGGTDTYD 71
           EGYE LARAKEGSSMSL HGNSD +KGNGLLSDVQ+PGVGSLFTNQPEVEITS GTDTYD
Sbjct: 250 EGYEKLARAKEGSSMSLHHGNSDANKGNGLLSDVQDPGVGSLFTNQPEVEITSSGTDTYD 309

Query: 72  MFADEDEHAVPSSNENLVADANGVDRQTPNNLNPISESEASQNDYVYDESSGYILSLHSY 131
           MFADEDEHA PSSNENLVAD NG+ +Q P+NLNP SESEASQNDYVYDESSGY  S  S 
Sbjct: 310 MFADEDEHADPSSNENLVADGNGIKQQIPSNLNPNSESEASQNDYVYDESSGYYYS-SSL 369

Query: 132 GFRGPNWTLHFC 144
           G+     T  FC
Sbjct: 370 GYYYDPSTGLFC 380

[Close]
BLAST of Cla001839 vs. NCBI nr
Match: gi|595792251|ref|XP_007199874.1| (hypothetical protein PRUPE_ppa006084mg [Prunus persica])

HSP 1 Score: 94.7 bits (234), Expect = 1.7e-16
Identity = 60/132 (45.45%), Postives = 78/132 (59.09%), Query Frame = 1 

Query: 12  EGYETLARAK-EGSSMSLDHGNSDVHKGNGLLSDVQNPGV----------GSLFTNQPEV 71
           EGYE+LARA+ EG+S S   G S +    G  SDV +PGV          GS  +N P  
Sbjct: 254 EGYESLARARREGTSTSAYQGKSVLSMEWGTSSDVTSPGVPSSILPETAVGSSNSNAPAA 313

Query: 72  EITSGGTDTYDMFADEDEHAV--PSSNENLVA---DANGVDRQTPNNLNPISESEASQND 128
           E TS G D +D+FA++DEH +  PSS  + V    +++GV   + NNLN  SE+   QND
Sbjct: 314 ETTSNGADAFDIFAEDDEHVIAKPSSEGSDVICGPNSDGVSSLSSNNLNAYSENGVLQND 373

[Close]
BLAST of Cla001839 vs. NCBI nr
Match: gi|645263330|ref|XP_008237185.1| (PREDICTED: LIN1-like protein [Prunus mume])

HSP 1 Score: 89.7 bits (221), Expect = 5.5e-15
Identity = 58/132 (43.94%), Postives = 75/132 (56.82%), Query Frame = 1 

Query: 12  EGYETLARAK-EGSSMSLDHGNSDVHKGNGLLSDVQNPGV----------GSLFTNQPEV 71
           EGYE+LARA+ EG+S     G S +    G  SDV  PGV          G+  +N P  
Sbjct: 254 EGYESLARARREGTSTGAYQGKSVLSMEWGTSSDVTGPGVPSSILPETAVGTSNSNAPAA 313

Query: 72  EITSGGTDTYDMFADEDEHAV--PSSNENLVA---DANGVDRQTPNNLNPISESEASQND 128
           E TS G D +D+FA++DEH +  PSS  + V    +++GV     NNLN  SE+   QND
Sbjct: 314 ESTSNGADAFDIFAEDDEHVIAKPSSEGSDVICGPNSDGVSSLPLNNLNAYSENGVLQND 373

[Close]
BLAST of Cla001839 vs. NCBI nr
Match: gi|657963177|ref|XP_008373191.1| (PREDICTED: uncharacterized protein LOC103436539 [Malus domestica])

HSP 1 Score: 87.8 bits (216), Expect = 2.1e-14
Identity = 57/131 (43.51%), Postives = 75/131 (57.25%), Query Frame = 1 

Query: 12  EGYETLARAK-EGSSMSLDHGNSDVHKGNGLLSDVQNPG----------VGSLFTNQPEV 71
           EGYE+LARA+ E +S+S     S +       SDV NPG          V +  +N   V
Sbjct: 250 EGYESLARARREPTSISAYQERSVLGMEWESSSDVTNPGAPSSILPETAVATSSSNATTV 309

Query: 72  EITSGGTDTYDMFADEDEHAV--PSSNENLVADANG--VDRQTPNNLNPISESEASQNDY 128
           EI+S G D +DMFA++DEHA+  PS   N+++  N   V   + NNLN  SE+   QNDY
Sbjct: 310 EISSNGDDAFDMFAEDDEHAIAKPSEGSNVISGPNSYCVSSPSSNNLNNYSENGVLQNDY 369

The following BLAST results are available for this feature:
BLAST of Cla001839 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K401_CUCSA1.4e-4979.55Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062800 PE=4 SV=1[more]
M5VVX1_PRUPE1.2e-1645.45Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006084mg PE=4 SV=1[more]
A0A0D2RJJ6_GOSRA3.4e-1140.16Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G2198002 PE... [more]
A0A0D2NGP5_GOSRA3.4e-1140.16Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G2198002 PE... [more]
A0A0D2RR53_GOSRA3.4e-1140.16Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G2198002 PE... [more]
BLAST of Cla001839 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110414|ref|XP_008455212.1|1.8e-5081.82PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 homolog [Cucumis melo][more]
gi|449438191|ref|XP_004136873.1|2.0e-4979.55PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 homolog [Cucumis sativ... [more]
gi|595792251|ref|XP_007199874.1|1.7e-1645.45hypothetical protein PRUPE_ppa006084mg [Prunus persica][more]
gi|645263330|ref|XP_008237185.1|5.5e-1543.94PREDICTED: LIN1-like protein [Prunus mume][more]
gi|657963177|ref|XP_008373191.1|2.1e-1443.51PREDICTED: uncharacterized protein LOC103436539 [Malus domestica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005682 U5 snRNP
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU41616watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001839Cla001839.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU41616WMU41616transcribed_cluster