Cla001754 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001754
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ribulose bisphosphate carboxylase large chain (Fragment) (AHRD V1 ***- E3TI02_9ASTR); contains Interpro domain(s) IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal
Location	Chr7 : 15126210 .. 15126728 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGACTTCCATTGTGGGTAATGTTTTTGGATTCAAGGCTCTGCATGCTCTACGTCTGGAGGATTTGCGAATCCCTACTGCTTATGTTAAAACTTTCCACAGCCCGCCTCATGGTATCCAAGTTGAAAGAGAGAAATTGAACAAGTATGGTCATCCTCTATTGGGATGTACTATTAAACCAAAATTGGGATTATCCGCTAAGAATTATGGTAGAGTAGTTTATGAATGTCTACACGGTGGACTTGATTTTACCAAAGATGATGAAAACGTGAATTGCCAACCATTTATACGTTGGAAAGACCGTTTCCTATTTTTTGCGGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAGGGACATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATGATGAAAAAGGTTGTATTTGCCAGAGAATTGGGAGTTCCTATCGTAATGCATGACTACTTAACAAGTGGATTCATTGCAAATACTAGCTTGGAATTAGCCAAAGTGACAATATGA

mRNA sequence

ATGTTGACTTCCATTGTGGGTAATGTTTTTGGATTCAAGGCTCTGCATGCTCTACGTCTGGAGGATTTGCGAATCCCTACTGCTTATGTTAAAACTTTCCACAGCCCGCCTCATGGTATCCAAGTTGAAAGAGAGAAATTGAACAAGTATGGTCATCCTCTATTGGGATGTACTATTAAACCAAAATTGGGATTATCCGCTAAGAATTATGGTAGAGTAGTTTATGAATGTCTACACGGTGGACTTGATTTTACCAAAGATGATGAAAACGTGAATTGCCAACCATTTATACGTTGGAAAGACCGTTTCCTATTTTTTGCGGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAGGGACATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATGATGAAAAAGGTTGTATTTGCCAGAGAATTGGGAGTTCCTATCGTAATGCATGACTACTTAACAAGTGGATTCATTGCAAATACTAGCTTGGAATTAGCCAAAGTGACAATATGA

Coding sequence (CDS)

ATGTTGACTTCCATTGTGGGTAATGTTTTTGGATTCAAGGCTCTGCATGCTCTACGTCTGGAGGATTTGCGAATCCCTACTGCTTATGTTAAAACTTTCCACAGCCCGCCTCATGGTATCCAAGTTGAAAGAGAGAAATTGAACAAGTATGGTCATCCTCTATTGGGATGTACTATTAAACCAAAATTGGGATTATCCGCTAAGAATTATGGTAGAGTAGTTTATGAATGTCTACACGGTGGACTTGATTTTACCAAAGATGATGAAAACGTGAATTGCCAACCATTTATACGTTGGAAAGACCGTTTCCTATTTTTTGCGGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAGGGACATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATGATGAAAAAGGTTGTATTTGCCAGAGAATTGGGAGTTCCTATCGTAATGCATGACTACTTAACAAGTGGATTCATTGCAAATACTAGCTTGGAATTAGCCAAAGTGACAATATGA

Protein sequence

MLTSIVGNVFGFKALHALRLEDLRIPTAYVKTFHSPPHGIQVEREKLNKYGHPLLGCTIKPKLGLSAKNYGRVVYECLHGGLDFTKDDENVNCQPFIRWKDRFLFFAEAIYKSQAETGEIKGHYLNATAGTCEEMMKKVVFARELGVPIVMHDYLTSGFIANTSLELAKVTI

Homology

[Close]

BLAST of Cla001754 vs. Swiss-Prot
Match: RBL_SEDRU (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Sedum rubrotinctum GN=rbcL PE=3 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 7.7e-83
Identity = 148/165 (89.70%), Postives = 150/165 (90.91%), Query Frame = 1


Query: 1   MLTSIVGNVFGFKALHALRLEDLRIPTAYVKTFHSPPHGIQVEREKLNKYGHPLLGCTIK 60
           M TSIVGNVFGFKAL ALRLEDLRIP AYVKTF  PPHGIQVER+KLNKYG PLLGCTIK
Sbjct: 106 MFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 165

Query: 61  PKLGLSAKNYGRVVYECLHGGLDFTKDDENVNCQPFIRWKDRFLFFAEAIYKSQAETGEI 120
           PKLGLSAKNYGR VYECL GGLDFTKDDENVN QPF+RW+DRFLF AEAIYKSQAETGEI
Sbjct: 166 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 225

Query: 121 KGHYLNATAGTCEEMMKKVVFARELGVPIVMHDYLTSGFIANTSL 166
           KGHYLNATAGTCEEMMK+ VFARELGVPIVMHDYLT GF ANTSL
Sbjct: 226 KGHYLNATAGTCEEMMKRAVFARELGVPIVMHDYLTGGFTANTSL 270

[Close]

BLAST of Cla001754 vs. Swiss-Prot
Match: RBL_SOYBN (Ribulose bisphosphate carboxylase large chain OS=Glycine max GN=rbcL PE=1 SV=3)

HSP 1 Score: 307.8 bits (787), Expect = 7.7e-83
Identity = 147/165 (89.09%), Postives = 151/165 (91.52%), Query Frame = 1


Query: 1   MLTSIVGNVFGFKALHALRLEDLRIPTAYVKTFHSPPHGIQVEREKLNKYGHPLLGCTIK 60
           M TSIVGNVFGFKAL ALRLEDLRIPTAY+KTF  PPHGIQVER+KLNKYG PLLGCTIK
Sbjct: 116 MFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 175

Query: 61  PKLGLSAKNYGRVVYECLHGGLDFTKDDENVNCQPFIRWKDRFLFFAEAIYKSQAETGEI 120
           PKLGLSAKNYGR VYECL GGLDFTKDDENVN QPF+RW+DRFLF AEAI+KSQAETGEI
Sbjct: 176 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGEI 235

Query: 121 KGHYLNATAGTCEEMMKKVVFARELGVPIVMHDYLTSGFIANTSL 166
           KGHYLNATAGTCEEMMK+ VFARELGVPIVMHDYLT GF ANTSL
Sbjct: 236 KGHYLNATAGTCEEMMKRAVFARELGVPIVMHDYLTGGFTANTSL 280

[Close]

BLAST of Cla001754 vs. Swiss-Prot
Match: RBL_LACSA (Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa GN=rbcL PE=3 SV=2)

HSP 1 Score: 307.8 bits (787), Expect = 7.7e-83
Identity = 147/165 (89.09%), Postives = 151/165 (91.52%), Query Frame = 1


Query: 1   MLTSIVGNVFGFKALHALRLEDLRIPTAYVKTFHSPPHGIQVEREKLNKYGHPLLGCTIK 60
           M TSIVGNVFGFKAL ALRLEDLRIPTAYVKTF  PPHGIQVER+KLNKYG PLLGCTIK
Sbjct: 116 MFTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 175

Query: 61  PKLGLSAKNYGRVVYECLHGGLDFTKDDENVNCQPFIRWKDRFLFFAEAIYKSQAETGEI 120
           PKLGLSAKNYGR VYECL GGLDFTKDDENVN QPF+RW+DRFLF AEAI+KSQAETGEI
Sbjct: 176 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGEI 235

Query: 121 KGHYLNATAGTCEEMMKKVVFARELGVPIVMHDYLTSGFIANTSL 166
           KGHYLNATAGTCEEMMK+ +FARELGVPIVMHDYLT GF ANTSL
Sbjct: 236 KGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLTGGFTANTSL 280

[Close]

BLAST of Cla001754 vs. Swiss-Prot
Match: RBL_CRAMA (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Crassula marnierana GN=rbcL PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.0e-82
Identity = 147/165 (89.09%), Postives = 150/165 (90.91%), Query Frame = 1


Query: 1   MLTSIVGNVFGFKALHALRLEDLRIPTAYVKTFHSPPHGIQVEREKLNKYGHPLLGCTIK 60
           M TSIVGNVFGFKAL ALRLEDLRIP AYVKTF  PPHGIQVER+KLNKYG PLLGCTIK
Sbjct: 106 MFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 165

Query: 61  PKLGLSAKNYGRVVYECLHGGLDFTKDDENVNCQPFIRWKDRFLFFAEAIYKSQAETGEI 120
           PKLGLSAKNYGR VYECL GGLDFTKDDENVN QPF+RW+DRFLF AEAIYKSQAETGEI
Sbjct: 166 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 225

Query: 121 KGHYLNATAGTCEEMMKKVVFARELGVPIVMHDYLTSGFIANTSL 166
           KGHYLNATAGTCEEMMK+ +FARELGVPIVMHDYLT GF ANTSL
Sbjct: 226 KGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLTGGFTANTSL 270

[Close]

BLAST of Cla001754 vs. Swiss-Prot
Match: RBL_CORAT (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cornus alternifolia GN=rbcL PE=3 SV=3)

HSP 1 Score: 306.6 bits (784), Expect = 1.7e-82
Identity = 146/165 (88.48%), Postives = 151/165 (91.52%), Query Frame = 1


Query: 1   MLTSIVGNVFGFKALHALRLEDLRIPTAYVKTFHSPPHGIQVEREKLNKYGHPLLGCTIK 60
           M TSIVGNVFGFKAL ALRLEDLRIPTAYVKTF  PPHGIQVER+KLNKYG PLLGCTIK
Sbjct: 109 MFTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 168

Query: 61  PKLGLSAKNYGRVVYECLHGGLDFTKDDENVNCQPFIRWKDRFLFFAEAIYKSQAETGEI 120
           PKLGLSAKNYGR VYECL GGLDFTKDDENVN QPF+RW+DRFLF AEAI+KSQ+ETGEI
Sbjct: 169 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQSETGEI 228

Query: 121 KGHYLNATAGTCEEMMKKVVFARELGVPIVMHDYLTSGFIANTSL 166
           KGHYLNATAGTCEEMMK+ +FARELGVPIVMHDYLT GF ANTSL
Sbjct: 229 KGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLTGGFTANTSL 273

[Close]

BLAST of Cla001754 vs. TrEMBL
Match: Q33064_9ERIC (Ribulose 1,5-bisphosphate carboxylase large subunit (Fragment) OS=Styrax americanus GN=rbcL PE=3 SV=2)

HSP 1 Score: 310.5 bits (794), Expect = 1.3e-81
Identity = 148/165 (89.70%), Postives = 154/165 (93.33%), Query Frame = 1


Query: 1   MLTSIVGNVFGFKALHALRLEDLRIPTAYVKTFHSPPHGIQVEREKLNKYGHPLLGCTIK 60
           M TSIVGNVFGFKAL ALRLEDLRIPTAYVKTF  PPHGIQVER+KLNKYG PLLGCTIK
Sbjct: 106 MFTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 165

Query: 61  PKLGLSAKNYGRVVYECLHGGLDFTKDDENVNCQPFIRWKDRFLFFAEAIYKSQAETGEI 120
           PKLGLSAKNYGR VYECL GGLDFTKDDENVN QPF+RW+DRFLFFAEAIYK+QAETGEI
Sbjct: 166 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFFAEAIYKAQAETGEI 225

Query: 121 KGHYLNATAGTCEEMMKKVVFARELGVPIVMHDYLTSGFIANTSL 166
           KGHYLNATAGTCEEMMK+ VFARELGVPIVMHDYLT GF ANT+L
Sbjct: 226 KGHYLNATAGTCEEMMKRAVFARELGVPIVMHDYLTGGFTANTTL 270

[Close]

BLAST of Cla001754 vs. TrEMBL
Match: Q31678_AGAME (Rubisco large subunit (Fragment) OS=Agastache mexicana GN=rbcL PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.7e-81
Identity = 147/165 (89.09%), Postives = 154/165 (93.33%), Query Frame = 1


Query: 1   MLTSIVGNVFGFKALHALRLEDLRIPTAYVKTFHSPPHGIQVEREKLNKYGHPLLGCTIK 60
           M TSIVGNVFGFKAL ALRLEDLRIPTAY+KTF  PPHGIQVER+KLNKYG PLLGCTIK
Sbjct: 116 MFTSIVGNVFGFKALRALRLEDLRIPTAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 175

Query: 61  PKLGLSAKNYGRVVYECLHGGLDFTKDDENVNCQPFIRWKDRFLFFAEAIYKSQAETGEI 120
           PKLGLSAKNYGR VYECL GGLDFTKDDENVN QPF+RW+DRFLF+AEAIYK+QAETGEI
Sbjct: 176 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFYAEAIYKAQAETGEI 235

Query: 121 KGHYLNATAGTCEEMMKKVVFARELGVPIVMHDYLTSGFIANTSL 166
           KGHYLNATAGTCEEMMK+ VFARELGVPIVMHDYLT GF ANTSL
Sbjct: 236 KGHYLNATAGTCEEMMKRAVFARELGVPIVMHDYLTGGFTANTSL 280

[Close]

BLAST of Cla001754 vs. TrEMBL
Match: A0A059XT89_9MYRT (Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Oenothera riparia GN=rbcl PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.2e-81
Identity = 149/165 (90.30%), Postives = 153/165 (92.73%), Query Frame = 1


Query: 1   MLTSIVGNVFGFKALHALRLEDLRIPTAYVKTFHSPPHGIQVEREKLNKYGHPLLGCTIK 60
           M TSIVGNVFGFKAL ALRLEDLRIPTAYVKTF  PPHGIQVER+KLNKYG PLLGCTIK
Sbjct: 95  MFTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 154

Query: 61  PKLGLSAKNYGRVVYECLHGGLDFTKDDENVNCQPFIRWKDRFLFFAEAIYKSQAETGEI 120
           PKLGLSAKNYGR VYECL GGLDFTKDDENVN QPF+RW+DRFLF AEAIYKSQAETGEI
Sbjct: 155 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 214

Query: 121 KGHYLNATAGTCEEMMKKVVFARELGVPIVMHDYLTSGFIANTSL 166
           KGHYLNATAGTCEEMMK+ VFARELGVPIVMHDYLT GF ANTSL
Sbjct: 215 KGHYLNATAGTCEEMMKRAVFARELGVPIVMHDYLTGGFTANTSL 259

[Close]

BLAST of Cla001754 vs. TrEMBL
Match: A2VAH7_9ASTR (Ribulose bisphosphate carboxylase large subunit (Fragment) OS=Schistostephium umbellatum GN=rbcL PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.2e-81
Identity = 149/165 (90.30%), Postives = 153/165 (92.73%), Query Frame = 1


Query: 1   MLTSIVGNVFGFKALHALRLEDLRIPTAYVKTFHSPPHGIQVEREKLNKYGHPLLGCTIK 60
           M TSIVGNVFGFKAL ALRLEDLRIPTAYVKTF  PPHGIQVER+KLNKYG PLLGCTIK
Sbjct: 106 MFTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 165

Query: 61  PKLGLSAKNYGRVVYECLHGGLDFTKDDENVNCQPFIRWKDRFLFFAEAIYKSQAETGEI 120
           PKLGLSAKNYGR VYECL GGLDFTKDDENVN QPF+RW+DRFLF AEAIYKSQAETGEI
Sbjct: 166 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 225

Query: 121 KGHYLNATAGTCEEMMKKVVFARELGVPIVMHDYLTSGFIANTSL 166
           KGHYLNATAGTCEEMMK+ VFARELGVPIVMHDYLT GF ANTSL
Sbjct: 226 KGHYLNATAGTCEEMMKRAVFARELGVPIVMHDYLTGGFTANTSL 270

[Close]

BLAST of Cla001754 vs. TrEMBL
Match: E0D9C5_9LAMI (Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Otostegia sp. SH-2010 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.2e-81
Identity = 149/165 (90.30%), Postives = 153/165 (92.73%), Query Frame = 1


Query: 1   MLTSIVGNVFGFKALHALRLEDLRIPTAYVKTFHSPPHGIQVEREKLNKYGHPLLGCTIK 60
           M TSIVGNVFGFKAL ALRLEDLRIPTAYVKTF  PPHGIQVER+KLNKYG PLLGCTIK
Sbjct: 105 MFTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 164

Query: 61  PKLGLSAKNYGRVVYECLHGGLDFTKDDENVNCQPFIRWKDRFLFFAEAIYKSQAETGEI 120
           PKLGLSAKNYGR VYECL GGLDFTKDDENVN QPF+RW+DRFLF AEAIYKSQAETGEI
Sbjct: 165 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEI 224

Query: 121 KGHYLNATAGTCEEMMKKVVFARELGVPIVMHDYLTSGFIANTSL 166
           KGHYLNATAGTCEEMMK+ VFARELGVPIVMHDYLT GF ANTSL
Sbjct: 225 KGHYLNATAGTCEEMMKRAVFARELGVPIVMHDYLTGGFTANTSL 269

[Close]

BLAST of Cla001754 vs. NCBI nr
Match: gi|557836250|gb|AHA37419.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Hieracium bifidum])

HSP 1 Score: 308.5 bits (789), Expect = 7.2e-81
Identity = 147/165 (89.09%), Postives = 154/165 (93.33%), Query Frame = 1


Query: 1   MLTSIVGNVFGFKALHALRLEDLRIPTAYVKTFHSPPHGIQVEREKLNKYGHPLLGCTIK 60
           MLTSIVGNVFGFKAL ALRLEDLRIPTAYVKTF  PPHGIQVER+KLNKYG PLLGCTIK
Sbjct: 114 MLTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 173

Query: 61  PKLGLSAKNYGRVVYECLHGGLDFTKDDENVNCQPFIRWKDRFLFFAEAIYKSQAETGEI 120
           PKLGLSAKNYGR VYECL GGLDFTKDDENVN QPF+RW+DRFLF AEA++KSQAETGEI
Sbjct: 174 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALFKSQAETGEI 233

Query: 121 KGHYLNATAGTCEEMMKKVVFARELGVPIVMHDYLTSGFIANTSL 166
           KGHYLNATAGTCEEMMK+ +FARELGVPIVMHDYLT GF ANTSL
Sbjct: 234 KGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLTGGFTANTSL 278

[Close]

BLAST of Cla001754 vs. NCBI nr
Match: gi|683431918|gb|AIN40866.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Faberia nanchuanensis])

HSP 1 Score: 308.5 bits (789), Expect = 7.2e-81
Identity = 147/165 (89.09%), Postives = 154/165 (93.33%), Query Frame = 1


Query: 1   MLTSIVGNVFGFKALHALRLEDLRIPTAYVKTFHSPPHGIQVEREKLNKYGHPLLGCTIK 60
           MLTSIVGNVFGFKAL ALRLEDLRIPTAYVKTF  PPHGIQVER+KLNKYG PLLGCTIK
Sbjct: 94  MLTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 153

Query: 61  PKLGLSAKNYGRVVYECLHGGLDFTKDDENVNCQPFIRWKDRFLFFAEAIYKSQAETGEI 120
           PKLGLSAKNYGR VYECL GGLDFTKDDENVN QPF+RW+DRFLF AEA++KSQAETGEI
Sbjct: 154 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALFKSQAETGEI 213

Query: 121 KGHYLNATAGTCEEMMKKVVFARELGVPIVMHDYLTSGFIANTSL 166
           KGHYLNATAGTCEEMMK+ +FARELGVPIVMHDYLT GF ANTSL
Sbjct: 214 KGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLTGGFTANTSL 258

[Close]

BLAST of Cla001754 vs. NCBI nr
Match: gi|557836411|gb|AHA37488.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Hieracium murorum])

HSP 1 Score: 308.5 bits (789), Expect = 7.2e-81
Identity = 147/165 (89.09%), Postives = 154/165 (93.33%), Query Frame = 1


Query: 1   MLTSIVGNVFGFKALHALRLEDLRIPTAYVKTFHSPPHGIQVEREKLNKYGHPLLGCTIK 60
           MLTSIVGNVFGFKAL ALRLEDLRIPTAYVKTF  PPHGIQVER+KLNKYG PLLGCTIK
Sbjct: 97  MLTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 156

Query: 61  PKLGLSAKNYGRVVYECLHGGLDFTKDDENVNCQPFIRWKDRFLFFAEAIYKSQAETGEI 120
           PKLGLSAKNYGR VYECL GGLDFTKDDENVN QPF+RW+DRFLF AEA++KSQAETGEI
Sbjct: 157 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALFKSQAETGEI 216

Query: 121 KGHYLNATAGTCEEMMKKVVFARELGVPIVMHDYLTSGFIANTSL 166
           KGHYLNATAGTCEEMMK+ +FARELGVPIVMHDYLT GF ANTSL
Sbjct: 217 KGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLTGGFTANTSL 261

[Close]

BLAST of Cla001754 vs. NCBI nr
Match: gi|683431924|gb|AIN40869.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Faberia cavaleriei])

HSP 1 Score: 308.5 bits (789), Expect = 7.2e-81
Identity = 147/165 (89.09%), Postives = 154/165 (93.33%), Query Frame = 1


Query: 1   MLTSIVGNVFGFKALHALRLEDLRIPTAYVKTFHSPPHGIQVEREKLNKYGHPLLGCTIK 60
           MLTSIVGNVFGFKAL ALRLEDLRIPTAYVKTF  PPHGIQVER+KLNKYG PLLGCTIK
Sbjct: 94  MLTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 153

Query: 61  PKLGLSAKNYGRVVYECLHGGLDFTKDDENVNCQPFIRWKDRFLFFAEAIYKSQAETGEI 120
           PKLGLSAKNYGR VYECL GGLDFTKDDENVN QPF+RW+DRFLF AEA++KSQAETGEI
Sbjct: 154 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEALFKSQAETGEI 213

Query: 121 KGHYLNATAGTCEEMMKKVVFARELGVPIVMHDYLTSGFIANTSL 166
           KGHYLNATAGTCEEMMK+ +FARELGVPIVMHDYLT GF ANTSL
Sbjct: 214 KGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLTGGFTANTSL 258

[Close]

BLAST of Cla001754 vs. NCBI nr
Match: gi|564969827|gb|AHC05685.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Dasiphora fruticosa])

HSP 1 Score: 308.1 bits (788), Expect = 9.4e-81
Identity = 148/165 (89.70%), Postives = 153/165 (92.73%), Query Frame = 1


Query: 1   MLTSIVGNVFGFKALHALRLEDLRIPTAYVKTFHSPPHGIQVEREKLNKYGHPLLGCTIK 60
           M TSIVGNVFGFKAL ALRLEDLRIPTAYVKTF  PPHGIQVER+KLNKYG PLLGCTIK
Sbjct: 70  MFTSIVGNVFGFKALRALRLEDLRIPTAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 129

Query: 61  PKLGLSAKNYGRVVYECLHGGLDFTKDDENVNCQPFIRWKDRFLFFAEAIYKSQAETGEI 120
           PKLGLSAKNYGR VYECL GGLDFTKDDENVN QPF+RW+DRFLF AEAI+KSQAETGEI
Sbjct: 130 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGEI 189

Query: 121 KGHYLNATAGTCEEMMKKVVFARELGVPIVMHDYLTSGFIANTSL 166
           KGHYLNATAGTCEEMMK+ VFARELGVPIVMHDYLT GF ANTSL
Sbjct: 190 KGHYLNATAGTCEEMMKRAVFARELGVPIVMHDYLTGGFTANTSL 234

The following BLAST results are available for this feature:

BLAST of Cla001754 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBL_SEDRU	7.7e-83	89.70	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Sedum rubrotinctum G...	[more]
RBL_SOYBN	7.7e-83	89.09	Ribulose bisphosphate carboxylase large chain OS=Glycine max GN=rbcL PE=1 SV=3	[more]
RBL_LACSA	7.7e-83	89.09	Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa GN=rbcL PE=3 SV=...	[more]
RBL_CRAMA	1.0e-82	89.09	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Crassula marnierana ...	[more]
RBL_CORAT	1.7e-82	88.48	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cornus alternifolia ...	[more]

BLAST of Cla001754 vs. TrEMBL


Match Name	E-value	Identity	Description
Q33064_9ERIC	1.3e-81	89.70	Ribulose 1,5-bisphosphate carboxylase large subunit (Fragment) OS=Styrax america...	[more]
Q31678_AGAME	1.7e-81	89.09	Rubisco large subunit (Fragment) OS=Agastache mexicana GN=rbcL PE=3 SV=1	[more]
A0A059XT89_9MYRT	2.2e-81	90.30	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Oeno...	[more]
A2VAH7_9ASTR	2.2e-81	90.30	Ribulose bisphosphate carboxylase large subunit (Fragment) OS=Schistostephium um...	[more]
E0D9C5_9LAMI	2.2e-81	90.30	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Otos...	[more]

BLAST of Cla001754 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|557836250\|gb\|AHA37419.1\|	7.2e-81	89.09	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]
gi\|683431918\|gb\|AIN40866.1\|	7.2e-81	89.09	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]
gi\|557836411\|gb\|AHA37488.1\|	7.2e-81	89.09	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]
gi\|683431924\|gb\|AIN40869.1\|	7.2e-81	89.09	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]
gi\|564969827\|gb\|AHC05685.1\|	9.4e-81	89.70	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000685	RuBisCO_lsu_C
IPR017443	RuBisCO_lsu_fd_N
IPR020878	RuBisCo_large_chain_AS

Vocabulary: **Molecular Function**
Term	Definition
GO:0000287	magnesium ion binding
GO:0016984	ribulose-bisphosphate carboxylase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015977	carbon fixation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0015977	carbon fixation
cellular_component	GO:0009573	chloroplast ribulose bisphosphate carboxylase complex
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001754	Cla001754.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	GENE3D	G3DSA:3.20.20.110		coord: 36..166 score: 1.0
IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	PFAM	PF00016	RuBisCO_large	coord: 39..166 score: 7.1
IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	unknown	SSF51649	RuBisCo, C-terminal domain	coord: 33..166 score: 5.23
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	GENE3D	G3DSA:3.30.70.150		coord: 1..33 score: 2.6
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 1..29 score: 4.
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	unknown	SSF54966	RuBisCO, large subunit, small (N-terminal) domain	coord: 1..33 score: 8.25
IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	PROSITE	PS00157	RUBISCO_LARGE	coord: 81..89 scor
None	No IPR available	PANTHER	PTHR23321	RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR	coord: 1..165 score: 5.3E
None	No IPR available	PANTHER	PTHR23321:SF31	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN-RELATED	coord: 1..165 score: 5.3E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001754	Watermelon (Charleston Gray)	wcgwmB370
Cla001754	Watermelon (Charleston Gray)	wcgwmB380