Cla001753 (gene) Watermelon (97103) v1

Overview
NameCla001753
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRibulose bisphosphate carboxylase large chain 1 (AHRD V1 ***- C3KEH1_CERDE); contains Interpro domain(s) IPR017444 Ribulose bisphosphate carboxylase, large subunit, N-terminal
LocationChr7 : 15125844 .. 15126191 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAACCTGGTGTTAAAGATTCTAAATTGACTTATTCGACTCCTGAATATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCTGAGGAAGCAGGGGCCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATGTAGCTTATCCCCTAGACCTTTTTTAA

mRNA sequence

ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAACCTGGTGTTAAAGATTCTAAATTGACTTATTCGACTCCTGAATATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCTGAGGAAGCAGGGGCCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATGTAGCTTATCCCCTAGACCTTTTTTAA

Coding sequence (CDS)

ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAACCTGGTGTTAAAGATTCTAAATTGACTTATTCGACTCCTGAATATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCTGAGGAAGCAGGGGCCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATGTAGCTTATCCCCTAGACCTTTTTTAA

Protein sequence

MSCREGLMSPQTETKASVGFKPGVKDSKLTYSTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF
Homology
[Close]
BLAST of Cla001753 vs. Swiss-Prot
Match: RBL_CICIN (Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus GN=rbcL PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 4.1e-56
Identity = 105/108 (97.22%), Postives = 103/108 (95.37%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKPGVKDSKLTYSTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
           MSPQTETKASVGFK GVKD KLTY TPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 116
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 108

[Close]
BLAST of Cla001753 vs. Swiss-Prot
Match: RBL_LACSA (Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa GN=rbcL PE=3 SV=2)

HSP 1 Score: 218.4 bits (555), Expect = 4.1e-56
Identity = 105/108 (97.22%), Postives = 103/108 (95.37%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKPGVKDSKLTYSTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
           MSPQTETKASVGFK GVKD KLTY TPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 116
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 108

[Close]
BLAST of Cla001753 vs. Swiss-Prot
Match: RBL_BARSO (Ribulose bisphosphate carboxylase large chain OS=Bartlettina sordida GN=rbcL PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 9.1e-56
Identity = 104/108 (96.30%), Postives = 103/108 (95.37%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKPGVKDSKLTYSTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
           MSPQTETKASVGFK GVKD KLTY TPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 116
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGE+NQYIAYVAYPLDLF
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEDNQYIAYVAYPLDLF 108

[Close]
BLAST of Cla001753 vs. Swiss-Prot
Match: RBL_FLABI (Ribulose bisphosphate carboxylase large chain OS=Flaveria bidentis GN=rbcL PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 9.1e-56
Identity = 104/108 (96.30%), Postives = 103/108 (95.37%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKPGVKDSKLTYSTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
           MSPQTETKASVGFK GVKD KLTY TPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 116
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGE+NQYIAYVAYPLDLF
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEDNQYIAYVAYPLDLF 108

[Close]
BLAST of Cla001753 vs. Swiss-Prot
Match: RBL_FLAPR (Ribulose bisphosphate carboxylase large chain OS=Flaveria pringlei GN=rbcL PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 9.1e-56
Identity = 104/108 (96.30%), Postives = 103/108 (95.37%), Query Frame = 1 

Query: 8   MSPQTETKASVGFKPGVKDSKLTYSTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
           MSPQTETKASVGFK GVKD KLTY TPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 68  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 116
           SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGE+NQYIAYVAYPLDLF
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEDNQYIAYVAYPLDLF 108

[Close]
BLAST of Cla001753 vs. TrEMBL
Match: A0A0C9S5Z3_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_12312_3435 transcribed RNA sequence OS=Wollemia nobilis PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.2e-58
Identity = 111/115 (96.52%), Postives = 111/115 (96.52%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKPGVKDSKLTYSTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREG MSPQTETKASVGFK GVKD KLTY TPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGFMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 116
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 115

[Close]
BLAST of Cla001753 vs. TrEMBL
Match: A0A0H3VXN4_9POAL (Ribulose bisphosphate carboxylase large chain OS=Otatea glauca GN=rbcL PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-56
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKPGVKDSKLTYSTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFK GVKD KLTY TPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 116
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLF
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQYIAYVAYPLDLF 115

[Close]
BLAST of Cla001753 vs. TrEMBL
Match: A0A0H3VYE9_9POAL (Ribulose bisphosphate carboxylase large chain OS=Pariana radiciflora GN=rbcL PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-56
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKPGVKDSKLTYSTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFK GVKD KLTY TPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 116
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLF
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQYIAYVAYPLDLF 115

[Close]
BLAST of Cla001753 vs. TrEMBL
Match: A0A0B2NQK2_GLYSO (Ribulose bisphosphate carboxylase large chain OS=Glycine soja GN=glysoja_042737 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-56
Identity = 108/115 (93.91%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKPGVKDSKLTYSTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREG MSPQTETKASVGFK GVKD KLTY TP+YETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGFMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 116
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG+EPV GEENQYIAYVAYPLDLF
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGLEPVAGEENQYIAYVAYPLDLF 115

[Close]
BLAST of Cla001753 vs. TrEMBL
Match: A0A0H3VVG5_9POAL (Ribulose bisphosphate carboxylase large chain OS=Chusquea sp. PFM-2015 GN=rbcL PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-56
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKPGVKDSKLTYSTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFK GVKD KLTY TPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 116
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLF
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQYIAYVAYPLDLF 115

[Close]
BLAST of Cla001753 vs. NCBI nr
Match: gi|74027109|gb|AAZ94659.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cucumis sativus])

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-57
Identity = 111/115 (96.52%), Postives = 111/115 (96.52%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKPGVKDSKLTYSTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFK GVKD KLTY TPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 116
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPV GEENQYIAYVAYPLDLF
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAYVAYPLDLF 115

[Close]
BLAST of Cla001753 vs. NCBI nr
Match: gi|821158933|gb|AKH04857.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (plastid) [Pariana sp. PFM-2015])

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-56
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKPGVKDSKLTYSTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFK GVKD KLTY TPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 116
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLF
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQYIAYVAYPLDLF 115

[Close]
BLAST of Cla001753 vs. NCBI nr
Match: gi|734309146|gb|KHM99324.1| (Ribulose bisphosphate carboxylase large chain [Glycine soja])

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-56
Identity = 108/115 (93.91%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKPGVKDSKLTYSTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREG MSPQTETKASVGFK GVKD KLTY TP+YETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGFMSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 116
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG+EPV GEENQYIAYVAYPLDLF
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGLEPVAGEENQYIAYVAYPLDLF 115

[Close]
BLAST of Cla001753 vs. NCBI nr
Match: gi|1015811109|gb|AMW66238.1| (ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (plastid) [Licuala paludosa])

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-56
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKPGVKDSKLTYSTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFK GVKD KLTY TPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 116
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLF
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQYIAYVAYPLDLF 115

[Close]
BLAST of Cla001753 vs. NCBI nr
Match: gi|374975206|gb|AFA27693.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (plastid) [Potarophytum riparium])

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-56
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 1   MSCREGLMSPQTETKASVGFKPGVKDSKLTYSTPEYETKDTDILAAFRVTPQPGVPPEEA 60
           MSCREGLMSPQTETKASVGFK GVKD KLTY TPEYETKDTDILAAFRVTPQPGVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYVAYPLDLF 116
           GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEENQYIAYVAYPLDLF
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQYIAYVAYPLDLF 115

The following BLAST results are available for this feature:
BLAST of Cla001753 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RBL_CICIN4.1e-5697.22Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus GN=rbcL PE=3 ... [more]
RBL_LACSA4.1e-5697.22Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa GN=rbcL PE=3 SV=... [more]
RBL_BARSO9.1e-5696.30Ribulose bisphosphate carboxylase large chain OS=Bartlettina sordida GN=rbcL PE=... [more]
RBL_FLABI9.1e-5696.30Ribulose bisphosphate carboxylase large chain OS=Flaveria bidentis GN=rbcL PE=3 ... [more]
RBL_FLAPR9.1e-5696.30Ribulose bisphosphate carboxylase large chain OS=Flaveria pringlei GN=rbcL PE=3 ... [more]
BLAST of Cla001753 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0C9S5Z3_9SPER5.2e-5896.52TSA: Wollemia nobilis Ref_Wollemi_Transcript_12312_3435 transcribed RNA sequence... [more]
A0A0H3VXN4_9POAL1.7e-5695.65Ribulose bisphosphate carboxylase large chain OS=Otatea glauca GN=rbcL PE=3 SV=1[more]
A0A0H3VYE9_9POAL1.7e-5695.65Ribulose bisphosphate carboxylase large chain OS=Pariana radiciflora GN=rbcL PE=... [more]
A0A0B2NQK2_GLYSO1.7e-5693.91Ribulose bisphosphate carboxylase large chain OS=Glycine soja GN=glysoja_042737 ... [more]
A0A0H3VVG5_9POAL1.7e-5695.65Ribulose bisphosphate carboxylase large chain OS=Chusquea sp. PFM-2015 GN=rbcL P... [more]
BLAST of Cla001753 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|74027109|gb|AAZ94659.1|2.2e-5796.52ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cucumis sativus][more]
gi|821158933|gb|AKH04857.1|2.4e-5695.65ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (plastid) [Pariana... [more]
gi|734309146|gb|KHM99324.1|2.4e-5693.91Ribulose bisphosphate carboxylase large chain [Glycine soja][more]
gi|1015811109|gb|AMW66238.1|2.4e-5695.65ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (plastid) [Licuala... [more]
gi|374975206|gb|AFA27693.1|2.4e-5695.65ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (plastid)... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR017443RuBisCO_lsu_fd_N
Vocabulary: Biological Process
TermDefinition
GO:0015977carbon fixation
Vocabulary: Molecular Function
TermDefinition
GO:0016984ribulose-bisphosphate carboxylase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0015977 carbon fixation
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001753Cla001753.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalGENE3DG3DSA:3.30.70.150coord: 29..115
score: 2.1
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalPFAMPF02788RuBisCO_large_Ncoord: 31..115
score: 9.9
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalunknownSSF54966RuBisCO, large subunit, small (N-terminal) domaincoord: 16..115
score: 1.57
NoneNo IPR availablePANTHERPTHR23321RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLARcoord: 33..115
score: 2.5
NoneNo IPR availablePANTHERPTHR23321:SF33SUBFAMILY NOT NAMEDcoord: 33..115
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla001753Cla97C07G134850Watermelon (97103) v2wmwmbB171
Cla001753ClCG07G007510Watermelon (Charleston Gray)wcgwmB370
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001753Watermelon (Charleston Gray)wcgwmB380