Cla001743 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001743
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 18192025 .. 18192774 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCCAGCAACTCACCTCCTCCAAAAGCCCTAAACTTATTGCCTCATCCTCGAGGCATGGTAGTCGGAATCTGTCCACTACCTCCACCGCACCTGAACCCCTTACCATTGTTCGCCCCAATAGTCCTGAGTTGGAAGCGACATCAGCCCCATCTCCGCCATGCTCCAGGGACCTGTCTGAAGCTCAAGAGGTGGAAAGGAATGATGAGTCCACCGTCTTCGGAGATATTCTAGACACCATCGATGAAGAAGACGATGACTGGTTGGACGAGTTGGTCGACCAGAGGATGAAAAATGAGTCGCGTGGGTCAGTCCCTACGATGAGTGGTTTTGAGGAGTCGGACTCCGATGAAAGACCTATTGGAAAGGTAACAGCGGCGGTGGAAAAGAAGAAGTCCACCACGAAAAGGAAAATCAGGCCAATAAGGGCCAAGGAAGAAGCCGAGGAAGATGTACCTCCGCTAAGAAGGAAAAATGAAAAATTAAAGGATGCGGGGACATCCGAGGCTATCACATCATCTTTCGCCGCATCATCTGTTGAGCGGTTAGCAGTGAGGGCGGCAGAGAAGTCAAGGAAGCTGAAAGACAACATCAAAAAAAATGAAAGAAAGGACGGAGTCGTTTCTTGCCTCAAAGAAGAGAAGAAAAGAGGAAATCGCATCTGGCGTACAAGCTGTCAAGGAGGCCGCCAGGAAAACCGAGTTTCTCTGTCGCATAGCAGAGATTGCGACGGAATTAGAAGTTGA

mRNA sequence

ATGGCTTTCCAGCAACTCACCTCCTCCAAAAGCCCTAAACTTATTGCCTCATCCTCGAGGCATGGTAGTCGGAATCTGTCCACTACCTCCACCGCACCTGAACCCCTTACCATTGTTCGCCCCAATAGTCCTGAGTTGGAAGCGACATCAGCCCCATCTCCGCCATGCTCCAGGGACCTGTCTGAAGCTCAAGAGGTGGAAAGGAATGATGAGTCCACCGTCTTCGGAGATATTCTAGACACCATCGATGAAGAAGACGATGACTGGTTGGACGAGTTGGTCGACCAGAGGATGAAAAATGAGTCGCGTGGGTCAGTCCCTACGATGAGTGGTTTTGAGGAGTCGGACTCCGATGAAAGACCTATTGGAAAGGTAACAGCGGCGGTGGAAAAGAAGAAGTCCACCACGAAAAGGAAAATCAGGCCAATAAGGGCCAAGGAAGAAGCCGAGGAAGATGTACCTCCGCTAAGAAGGAAAAATGAAAAATTAAAGGATGCGGGGACATCCGAGGCTATCACATCATCTTTCGCCGCATCATCTGTTGAGCGGTTAGCAGTGAGGGCGGCAGAGAAGTCAAGGAAGCTGAAAGACAACATCAAAAAAAATGAAAGAAAGGACGGAGTCGTTTCTTGCCTCAAAGAAGAGAAGAAAAGAGGAAATCGCATCTGGCGTACAAGCTGTCAAGGAGGCCGCCAGGAAAACCGAGTTTCTCTGTCGCATAGCAGAGATTGCGACGGAATTAGAAGTTGA

Coding sequence (CDS)

ATGGCTTTCCAGCAACTCACCTCCTCCAAAAGCCCTAAACTTATTGCCTCATCCTCGAGGCATGGTAGTCGGAATCTGTCCACTACCTCCACCGCACCTGAACCCCTTACCATTGTTCGCCCCAATAGTCCTGAGTTGGAAGCGACATCAGCCCCATCTCCGCCATGCTCCAGGGACCTGTCTGAAGCTCAAGAGGTGGAAAGGAATGATGAGTCCACCGTCTTCGGAGATATTCTAGACACCATCGATGAAGAAGACGATGACTGGTTGGACGAGTTGGTCGACCAGAGGATGAAAAATGAGTCGCGTGGGTCAGTCCCTACGATGAGTGGTTTTGAGGAGTCGGACTCCGATGAAAGACCTATTGGAAAGGTAACAGCGGCGGTGGAAAAGAAGAAGTCCACCACGAAAAGGAAAATCAGGCCAATAAGGGCCAAGGAAGAAGCCGAGGAAGATGTACCTCCGCTAAGAAGGAAAAATGAAAAATTAAAGGATGCGGGGACATCCGAGGCTATCACATCATCTTTCGCCGCATCATCTGTTGAGCGGTTAGCAGTGAGGGCGGCAGAGAAGTCAAGGAAGCTGAAAGACAACATCAAAAAAAATGAAAGAAAGGACGGAGTCGTTTCTTGCCTCAAAGAAGAGAAGAAAAGAGGAAATCGCATCTGGCGTACAAGCTGTCAAGGAGGCCGCCAGGAAAACCGAGTTTCTCTGTCGCATAGCAGAGATTGCGACGGAATTAGAAGTTGA

Protein sequence

MAFQQLTSSKSPKLIASSSRHGSRNLSTTSTAPEPLTIVRPNSPELEATSAPSPPCSRDLSEAQEVERNDESTVFGDILDTIDEEDDDWLDELVDQRMKNESRGSVPTMSGFEESDSDERPIGKVTAAVEKKKSTTKRKIRPIRAKEEAEEDVPPLRRKNEKLKDAGTSEAITSSFAASSVERLAVRAAEKSRKLKDNIKKNERKDGVVSCLKEEKKRGNRIWRTSCQGGRQENRVSLSHSRDCDGIRS

Homology

[Close]

BLAST of Cla001743 vs. NCBI nr
Match: gi|1012035795|ref|XP_015953127.1| (PREDICTED: patellin-3-like isoform X2 [Arachis duranensis])

HSP 1 Score: 60.8 bits (146), Expect = 3.8e-06
Identity = 50/170 (29.41%), Postives = 78/170 (45.88%), Query Frame = 1


Query: 48  ATSAPSPPCSRDLSEAQEVERNDESTVFGDILDTIDEEDDDWLDELVDQRMKNESRGSVP 107
           A S    P       AQ V   +ES V GD+ +   +  DD L  L+ + +      S P
Sbjct: 68  AESEAEKPVEGKNQIAQSVSFKEESYVVGDLPEAQKKALDD-LKNLIQEALNKHELSSPP 127

Query: 108 TMSGFEESDSDERPIGKVTAAVEKKKSTTKRKIRPIRAKEEAEEDVPPLRRKNEKLKDAG 167
                +E D  +     V AA EKK+   ++K     A+EE +E+V     K E++  A 
Sbjct: 128 PPPPPKEEDKKKEEA--VAAAEEKKEEAEEKKEEAAAAEEEKKEEVVAAEEKKEEVVAAA 187

Query: 168 TSEAITSSFAASSVERLAVRAAEKSRKLKDNIKKNERKDGVVSCLKEEKK 218
             E    + AA   ++  V AAE+  K ++ +   E+K+ VV+  +EEKK
Sbjct: 188 EEEKKEEAAAAEEEKKEEVVAAEE--KKEEVVAAEEKKEEVVAAAEEEKK 232

The following BLAST results are available for this feature:

BLAST of Cla001743 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012035795\|ref\|XP_015953127.1\|	3.8e-06	29.41	PREDICTED: patellin-3-like isoform X2 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001743	Cla001743.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 146..166 score: -coord: 185..205 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001743	Wax gourd	wgowmB389
Cla001743	Watermelon (Charleston Gray)	wcgwmB199
Cla001743	Watermelon (Charleston Gray)	wcgwmB200
Cla001743	Cucurbita pepo (Zucchini)	cpewmB301
Cla001743	Bottle gourd (USVL1VR-Ls)	lsiwmB076
Cla001743	Silver-seed gourd	carwmB0341
Cla001743	Watermelon (97103) v2	wmwmbB320