Cla001693 (gene) Watermelon (97103) v1

Overview
NameCla001693
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 11265199 .. 11265519 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAATTACACTACATGTACGATATACCTATTGCACCTCCACCATTTCCTAGGCATAGAGGACGTGCTCGAGCAGAAGAAGATGAGTTTGATGCAGTTGACCATAATGTGGAAGAATTACCTCCTATGATGCAGACGCAAATGCAGAGCCAGACTGGTTATGGTAGTCCGATGATGATGCAACCAGCCTTTGGTTCAGGATATTATGATTCAGAGGCCAGACCATCGTCTTCATACATGCATACACATGGACAACCAGATCCACCAGAGCAACCTAGAGTGCGAAGTCGACGACGCCAACCAGCTCGAAATCGGTGA

mRNA sequence

ATGGAGGAATTACACTACATGTACGATATACCTATTGCACCTCCACCATTTCCTAGGCATAGAGGACGTGCTCGAGCAGAAGAAGATGAGTTTGATGCAGTTGACCATAATGTGGAAGAATTACCTCCTATGATGCAGACGCAAATGCAGAGCCAGACTGGTTATGGTAGTCCGATGATGATGCAACCAGCCTTTGGTTCAGGATATTATGATTCAGAGGCCAGACCATCGTCTTCATACATGCATACACATGGACAACCAGATCCACCAGAGCAACCTAGAGTGCGAAGTCGACGACGCCAACCAGCTCGAAATCGGTGA

Coding sequence (CDS)

ATGGAGGAATTACACTACATGTACGATATACCTATTGCACCTCCACCATTTCCTAGGCATAGAGGACGTGCTCGAGCAGAAGAAGATGAGTTTGATGCAGTTGACCATAATGTGGAAGAATTACCTCCTATGATGCAGACGCAAATGCAGAGCCAGACTGGTTATGGTAGTCCGATGATGATGCAACCAGCCTTTGGTTCAGGATATTATGATTCAGAGGCCAGACCATCGTCTTCATACATGCATACACATGGACAACCAGATCCACCAGAGCAACCTAGAGTGCGAAGTCGACGACGCCAACCAGCTCGAAATCGGTGA

Protein sequence

MEELHYMYDIPIAPPPFPRHRGRARAEEDEFDAVDHNVEELPPMMQTQMQSQTGYGSPMMMQPAFGSGYYDSEARPSSSYMHTHGQPDPPEQPRVRSRRRQPARNR
Homology
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BLAST of Cla001693 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-14
Identity = 50/117 (42.74%), Postives = 61/117 (52.14%), Query Frame = 1 

Query: 1   MEELHYMYDIPIAPPPFPRHRGRARAEEDEFDAVDHNVEELPPMMQTQMQSQTGYGSPMM 60
           ME +HYMYD+PI P P  R R   + E D+ + VD + EE+PPM QTQ QS+  Y SP+M
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQ-ESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVM 136

Query: 61  MQPA---------------FGSGYYDSEA----------------RPSSSYMHTHGQ 87
           M P                FG GYY+SEA                 PSSSYMH HG+
Sbjct: 137 MMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGR 192

The following BLAST results are available for this feature:
BLAST of Cla001693 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|2.1e-1442.74PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001693Cla001693.1mRNA