Cla001690 (gene) Watermelon (97103) v1

Overview
NameCla001690
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 11127614 .. 11127898 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGTAGCTGAATATGAAAAGAGGTATACTAAGTTAGCCAAGTATGCCATGGCTATCATAGCTGATGAGACGGATAGAGGTAAACGTTTTGAAGAAGATTTGAGGAAAGAGATACGTACTCCCGTTACAGTGAGTGTAGAGTGGACTAACTTCTCCAAGTTAGTCGAAACAGCTATGAAGGTTGAAAAGAGCTTGTCAGAAGAGAAAACAGAGAAAGAGACTTTCAGGGAGGAAAACCAGGACATCCATCTAGAGTGTTGTTCGCTAAATTTGTTCGTTTAA

mRNA sequence

ATGACTGTAGCTGAATATGAAAAGAGGTATACTAAGTTAGCCAAGTATGCCATGGCTATCATAGCTGATGAGACGGATAGAGGTAAACGTTTTGAAGAAGATTTGAGGAAAGAGATACGTACTCCCGTTACAGTGAGTGTAGAGTGGACTAACTTCTCCAAGTTAGTCGAAACAGCTATGAAGGTTGAAAAGAGCTTGTCAGAAGAGAAAACAGAGAAAGAGACTTTCAGGGAGGAAAACCAGGACATCCATCTAGAGTGTTGTTCGCTAAATTTGTTCGTTTAA

Coding sequence (CDS)

ATGACTGTAGCTGAATATGAAAAGAGGTATACTAAGTTAGCCAAGTATGCCATGGCTATCATAGCTGATGAGACGGATAGAGGTAAACGTTTTGAAGAAGATTTGAGGAAAGAGATACGTACTCCCGTTACAGTGAGTGTAGAGTGGACTAACTTCTCCAAGTTAGTCGAAACAGCTATGAAGGTTGAAAAGAGCTTGTCAGAAGAGAAAACAGAGAAAGAGACTTTCAGGGAGGAAAACCAGGACATCCATCTAGAGTGTTGTTCGCTAAATTTGTTCGTTTAA

Protein sequence

MTVAEYEKRYTKLAKYAMAIIADETDRGKRFEEDLRKEIRTPVTVSVEWTNFSKLVETAMKVEKSLSEEKTEKETFREENQDIHLECCSLNLFV
Homology
[Close]
BLAST of Cla001690 vs. TrEMBL
Match: A0A0A0KPI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G034500 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 1  MTVAEYEKRYTKLAKYAMAIIADETDRGKRFEEDLRKEIRTPVTVSVEWTNFSKLVETAM 60
          MT+AEYEK+Y KL ++A ++I DE    KR EE LR+EIRT VT   +W +FSKLVE A+
Sbjct: 1  MTIAEYEKKYKKLYEHATSVIEDEAKDCKRVEEGLREEIRTSVTPCAKWIDFSKLVEAAI 60

Query: 61 KVEKSLSEEKTEKETFR 78
          +V+ ++ E K E E  +
Sbjct: 61 RVQINVHERKLESEALK 77

[Close]
BLAST of Cla001690 vs. TrEMBL
Match: A0A0A0KYX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G436990 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-08
Identity = 30/75 (40.00%), Postives = 56/75 (74.67%), Query Frame = 1 

Query: 1  MTVAEYEKRYTKLAKYAMAIIADETDRGKRFEEDLRKEIRTPVTVSVEWTNFSKLVETAM 60
          ++V EYE+++TKLAKYA+ +I DE +R +    DLR+EIRT + + +  +++++LV+ A+
Sbjct: 13 LSVPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILIRSDYAQLVDAAL 72

Query: 61 KVEKSLSEEKTEKET 76
          +VEKSL  +++  ++
Sbjct: 73 RVEKSLGLKRSSSDS 87

[Close]
BLAST of Cla001690 vs. TrEMBL
Match: A0A0A0LR88_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G429045 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 1  MTVAEYEKRYTKLAKYAMAIIADETDRGKRFEEDLRKEIRTPVT 45
          MTV EYEK+YTKL+KYA ++I DE  R KRFEE LR++IRTP++
Sbjct: 1  MTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIRTPMS 44

[Close]
BLAST of Cla001690 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 6.0e-21
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 1 

Query: 1   MTVAEYEKRYTKLAKYAMAIIADETDRGKRFEEDLRKEIRTPVTVSVEWTNFSKLVETAM 60
           MT+AEYEK+Y KL+KYA ++I DE DR KRFE+ LR+EIRTPVT S EW  FSKLVETA+
Sbjct: 175 MTIAEYEKKYIKLSKYATSMIEDEIDRCKRFEDGLREEIRTPVTASSEWKEFSKLVETAV 234

Query: 61  KVEKSLSEEKTEKETFR 78
           +VEKSL+E K EKE  R
Sbjct: 235 RVEKSLAERKNEKEVSR 251

[Close]
BLAST of Cla001690 vs. NCBI nr
Match: gi|778697787|ref|XP_011654404.1| (PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 4.4e-16
Identity = 44/74 (59.46%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 1  MTVAEYEKRYTKLAKYAMAIIADETDRGKRFEEDLRKEIRTPVTVSVEWTNFSKLVETAM 60
          M VAEYEK+YTKL+KYA ++I DE +R K+FEE LR+EIRT VT   +W +FSK +E A+
Sbjct: 1  MIVAEYEKKYTKLSKYATSVIEDEIERCKQFEEGLREEIRTLVTACADWVDFSKSMEAAL 60

Query: 61 KVEKSLSEEKTEKE 75
          +VEKS+ E K E+E
Sbjct: 61 RVEKSVYERKRERE 74

[Close]
BLAST of Cla001690 vs. NCBI nr
Match: gi|659118041|ref|XP_008458920.1| (PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 5.8e-16
Identity = 44/77 (57.14%), Postives = 61/77 (79.22%), Query Frame = 1 

Query: 1   MTVAEYEKRYTKLAKYAMAIIADETDRGKRFEEDLRKEIRTPVTVSVEWTNFSKLVETAM 60
           +++AEYE++YT+L++YA  I+A E+DR  RFE  LR EIRTPVT   +WTNFS+LVETA+
Sbjct: 71  LSMAEYERKYTELSRYAGMIMASESDRCHRFERGLRFEIRTPVTAIAKWTNFSQLVETAL 130

Query: 61  KVEKSLSEEKTEKETFR 78
           +VE+S+ EEK+  E  R
Sbjct: 131 RVEQSIVEEKSAMELSR 147

[Close]
BLAST of Cla001690 vs. NCBI nr
Match: gi|659133542|ref|XP_008466780.1| (PREDICTED: uncharacterized protein LOC103504112 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 9.9e-16
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 1 

Query: 1   MTVAEYEKRYTKLAKYAMAIIADETDRGKRFEEDLRKEIRTPVTVSVEWTNFSKLVETAM 60
           + V EYE +YT+L++YA  I+A E+DR +RFE  LR E+RTPVT   +WTNFS+LVETA+
Sbjct: 76  LLVVEYEMKYTELSRYAEMIVASESDRCRRFERGLRFELRTPVTAIAKWTNFSQLVETAL 135

Query: 61  KVEKSLSEEKTEKETFR 78
           +VE+S+ EEK+  E  R
Sbjct: 136 RVEQSIVEEKSAMELSR 152

[Close]
BLAST of Cla001690 vs. NCBI nr
Match: gi|659130058|ref|XP_008464978.1| (PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-15
Identity = 42/77 (54.55%), Postives = 60/77 (77.92%), Query Frame = 1 

Query: 1   MTVAEYEKRYTKLAKYAMAIIADETDRGKRFEEDLRKEIRTPVTVSVEWTNFSKLVETAM 60
           ++V EYE++YT+L++YA  I+A E+DR +RFE  LR EIRTP+T   +W NFS+LVETA+
Sbjct: 56  LSVVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAKWMNFSQLVETAL 115

Query: 61  KVEKSLSEEKTEKETFR 78
           +VE+S+ EEK+  E  R
Sbjct: 116 RVEQSIVEEKSTMELSR 132

The following BLAST results are available for this feature:
BLAST of Cla001690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPI9_CUCSA1.6e-1250.65Uncharacterized protein OS=Cucumis sativus GN=Csa_5G034500 PE=4 SV=1[more]
A0A0A0KYX4_CUCSA2.4e-0840.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G436990 PE=4 SV=1[more]
A0A0A0LR88_CUCSA2.0e-0765.91Uncharacterized protein OS=Cucumis sativus GN=Csa_2G429045 PE=4 SV=1[more]
BLAST of Cla001690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116534|ref|XP_008458118.1|6.0e-2168.83PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|778697787|ref|XP_011654404.1|4.4e-1659.46PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus][more]
gi|659118041|ref|XP_008458920.1|5.8e-1657.14PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo][more]
gi|659133542|ref|XP_008466780.1|9.9e-1655.84PREDICTED: uncharacterized protein LOC103504112 [Cucumis melo][more]
gi|659130058|ref|XP_008464978.1|1.7e-1554.55PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001690Cla001690.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 59..79
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla001690ClCG01G012830Watermelon (Charleston Gray)wcgwmB160
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001690Melon (DHL92) v3.6.1medwmB157
Cla001690Melon (DHL92) v3.6.1medwmB165
Cla001690Silver-seed gourdcarwmB0158
Cla001690Cucumber (Chinese Long) v3cucwmB052
Cla001690Cucumber (Chinese Long) v3cucwmB060
Cla001690Watermelon (97103) v2wmwmbB251
Cla001690Wax gourdwgowmB499
Cla001690Wax gourdwgowmB512
Cla001690Cucumber (Gy14) v1cgywmB393
Cla001690Cucurbita maxima (Rimu)cmawmB198
Cla001690Cucurbita moschata (Rifu)cmowmB185
Cla001690Melon (DHL92) v3.5.1mewmB161
Cla001690Cucumber (Chinese Long) v2cuwmB045
Cla001690Cucurbita pepo (Zucchini)cpewmB802
Cla001690Bottle gourd (USVL1VR-Ls)lsiwmB261
Cla001690Cucumber (Gy14) v2cgybwmB046