Cla001654 (gene) Watermelon (97103) v1

Overview
NameCla001654
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionBHLH transcription factor-like (AHRD V1 *-*- Q941Z7_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding
LocationChr4 : 12640737 .. 12643002 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGCACTTTCCTCTCCTTTGTTTTCACCTCATCAATGGCCATTGGAAGATCCCATCTCTCTCCATCACCAAAATAACTCTCTCTTCTCTCCTTTTGAAGCTTCAGATCATTCATTTTACCTCCAATTCCCTTCGTCTCCGCCGTTGCAACCCCCGAACACCGAGCTCGACCACTATCCTTCCTCCGCTACTCCGTCGCCAAAAGGCGGCTCCAATATCTCGAAGATGGCCAAGAAACTTAGCCATAACGCTAGTGAGCGCGATCGTCGTAGAAAGATCAACTCCCTTTACTCGTCTCTACGCGCCCTCCTTCCCTCCACGGATCAAATGGTAAGCTTTACTTTACACATCTCTATTGGTTTTTTAGTTTAGTAATATCCAAGACTTAAACTAAATTACAAGTTTAGCCTTTAACCTTGCCATCAAATTTTCAAGCGCATTATATATGATCTAAATATACAGATACATGATTTACTTTTCTTTTTTAGTAACGGACTTTCTCCATTATCTTTTTTTCTCCCAAAATAAAATTAAAATTATGGAGTGGAGATTCAAAATTATCTTATCTCTGGCAAAAGAATATTTATTTGTTTCTAAAATTTGTTTAACTATGCTTATTTCAGGAGTTATAATCTGCACGGAGGTTCTTTGACCACCGTAAACCTTTGTCTGTCAATGATAATTTTAGTTAACAATGGTGTTCTTTCTTTCTCACAGAAGAAACTGAGTAACCCGGCGACGATATCGAGGATATTGAGCTACATACCGGAGCTACAACAGCAGGTAGAGGGGCTAATAGGAAAGAAAGAAGAGCTCATGGCAGCCATGGTTGGACGGGAAGTTAAGAATGATGAGGAAAAGAAAACGAAATGCGCAGCTTCGAGCTCCTCGTCGATCATTTCGGCTAGTCGACTTAGTCGATGGGAAATGGCGATTCAGATATCCACCGATATCAACGGCGGCTACCGGAATTCTTTGTCGGAGATCTTGGTTTGCTTGGAAGAAGAAGGTCTGCTTCTGTTGAATGCTTCTTCTTTTGAGTCTTTTGATGGGAAGGTTTTCCATAATTTGCATCTTCAGGTAATATATTATTATTATTATTATTATTATTATTATTTAGGTTATTTAATTTCCATTATGTTTTAAAAATTTTACATTTTTAAGTGATGAAGTACGCTTGAGAAGTTTTATTTTGATAATTTGTTAAAAAAACTACTTTTTTTTTTTTTTTATCAATTTTGTTCCTACATATTCTTTTATTTACTTGTAATAATGAAAAATCGATTGGACAAATAAAATGATAATGTGTTTTTTAATGGGCTATTTCCAAACATAGCAAAAGAAACCAAAATATTTATAAATATAGCAAAATTTTACTGTCTAACTGCGATAGGTCGCGATAGACTACTATCTGTGTCACGACATAGATAATAGTCCATCGCAATCTATTGTGGTCTATCACAGATAGACGGTGCTATTAGTTGTAAATATTTTCGACAATTTTATCATTTAAGATAATTTTCTTTTTTTTAATTTATGTAACGGGTGGAAAGAGGCTAATAATGATTATACAAATTAATAACCTTAATGCGTCATGTCAAAATTGGCAATATACGTAAAGTACATTAATATTTAAATTACCTAATCAAGTTTTCAATATTATCACTAGTGATATAATTTTATAAACCAATTTGAGTTATTTAATTTCCAAACCTTTAGTAAACATTAAAACTAAAATTATTTTTTGAAGCCATGAATTTATGCATAATAAATTATTAGATAAGACATCAATTCATATCCCAAAAGTTGATGATTTAATATTTTATAGAGTAATTTTTAAACTAAAATATTAAAATTAAAATATATATATTATTCTATAAAGTAATTTTTAAACTAGAATATTAAAATTAAAAAAATATATATGATTGTTAAAAAAAAGACTATTATGCTTTAAAGTACCACTCTCAAAAGTGTTGGTGGAGCAATTTGTTGGGAAGTTCTAAAAGCTAGTATGCTTCTAATTTCTTGAGAAATTGTTTACTAAAACATGTCTGAATAGCTATTTTATAACTTTTTTTTTTTTTAATGTTAATTATTATTGTTTAGAACCAACAAACAACTTCATAATATTTTAAGGTTAAAATTATAAGATTTGATATGTGAAAAACTCATGTTGTTAATTTTGAATGATAAACAGATGGGAAGCAATTGCAGAATGGAGCCTAAAATGCTGAGTACTAAGCTCTTGGAGATGTTCCCATGA

mRNA sequence

ATGTTGGCACTTTCCTCTCCTTTGTTTTCACCTCATCAATGGCCATTGGAAGATCCCATCTCTCTCCATCACCAAAATAACTCTCTCTTCTCTCCTTTTGAAGCTTCAGATCATTCATTTTACCTCCAATTCCCTTCGTCTCCGCCGTTGCAACCCCCGAACACCGAGCTCGACCACTATCCTTCCTCCGCTACTCCGTCGCCAAAAGGCGGCTCCAATATCTCGAAGATGGCCAAGAAACTTAGCCATAACGCTAGTGAGCGCGATCGTCGTAGAAAGATCAACTCCCTTTACTCGTCTCTACGCGCCCTCCTTCCCTCCACGGATCAAATGAAGAAACTGAGTAACCCGGCGACGATATCGAGGATATTGAGCTACATACCGGAGCTACAACAGCAGGTAGAGGGGCTAATAGGAAAGAAAGAAGAGCTCATGGCAGCCATGGTTGGACGGGAAGTTAAGAATGATGAGGAAAAGAAAACGAAATGCGCAGCTTCGAGCTCCTCGTCGATCATTTCGGCTAGTCGACTTAGTCGATGGGAAATGGCGATTCAGATATCCACCGATATCAACGGCGGCTACCGGAATTCTTTGTCGGAGATCTTGGTTTGCTTGGAAGAAGAAGGTCTGCTTCTGTTGAATGCTTCTTCTTTTGAGTCTTTTGATGGGAAGGTTTTCCATAATTTGCATCTTCAGATGGGAAGCAATTGCAGAATGGAGCCTAAAATGCTGAGTACTAAGCTCTTGGAGATGTTCCCATGA

Coding sequence (CDS)

ATGTTGGCACTTTCCTCTCCTTTGTTTTCACCTCATCAATGGCCATTGGAAGATCCCATCTCTCTCCATCACCAAAATAACTCTCTCTTCTCTCCTTTTGAAGCTTCAGATCATTCATTTTACCTCCAATTCCCTTCGTCTCCGCCGTTGCAACCCCCGAACACCGAGCTCGACCACTATCCTTCCTCCGCTACTCCGTCGCCAAAAGGCGGCTCCAATATCTCGAAGATGGCCAAGAAACTTAGCCATAACGCTAGTGAGCGCGATCGTCGTAGAAAGATCAACTCCCTTTACTCGTCTCTACGCGCCCTCCTTCCCTCCACGGATCAAATGAAGAAACTGAGTAACCCGGCGACGATATCGAGGATATTGAGCTACATACCGGAGCTACAACAGCAGGTAGAGGGGCTAATAGGAAAGAAAGAAGAGCTCATGGCAGCCATGGTTGGACGGGAAGTTAAGAATGATGAGGAAAAGAAAACGAAATGCGCAGCTTCGAGCTCCTCGTCGATCATTTCGGCTAGTCGACTTAGTCGATGGGAAATGGCGATTCAGATATCCACCGATATCAACGGCGGCTACCGGAATTCTTTGTCGGAGATCTTGGTTTGCTTGGAAGAAGAAGGTCTGCTTCTGTTGAATGCTTCTTCTTTTGAGTCTTTTGATGGGAAGGTTTTCCATAATTTGCATCTTCAGATGGGAAGCAATTGCAGAATGGAGCCTAAAATGCTGAGTACTAAGCTCTTGGAGATGTTCCCATGA

Protein sequence

MLALSSPLFSPHQWPLEDPISLHHQNNSLFSPFEASDHSFYLQFPSSPPLQPPNTELDHYPSSATPSPKGGSNISKMAKKLSHNASERDRRRKINSLYSSLRALLPSTDQMKKLSNPATISRILSYIPELQQQVEGLIGKKEELMAAMVGREVKNDEEKKTKCAASSSSSIISASRLSRWEMAIQISTDINGGYRNSLSEILVCLEEEGLLLLNASSFESFDGKVFHNLHLQMGSNCRMEPKMLSTKLLEMFP
Homology
[Close]
BLAST of Cla001654 vs. Swiss-Prot
Match: ORG3_ARATH (Transcription factor ORG3 OS=Arabidopsis thaliana GN=ORG3 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.3e-33
Identity = 98/258 (37.98%), Postives = 146/258 (56.59%), Query Frame = 1 

Query: 1   MLALSSPLFSPHQWPLEDPISLHHQNNSLFSPFEASDHSFYLQFPSSPPLQPPNTELDHY 60
           M AL  PLF    WP         + +S +   +  ++  +L FP         T +  +
Sbjct: 1   MCALVPPLFPNFGWPSTG------EYDSYYLAGDILNNGGFLDFPVPEETYGAVTAVTQH 60

Query: 61  PSS--ATPSPKGGS--NISKMAKKLSHNASERDRRRKINSLYSSLRALLPSTDQMKKLSN 120
            +S   + S +G    N   + KKL+HNASERDRRRKINSL+SSLR+ LP++ Q KKLS 
Sbjct: 61  QNSFGVSVSSEGNEIDNNPVVVKKLNHNASERDRRRKINSLFSSLRSCLPASGQSKKLSI 120

Query: 121 PATISRILSYIPELQQQVEGLIGKKEELMAAMVGREVKNDEEKKTKCAASSSSSIISASR 180
           PAT+SR L YIPELQ+QV+ LI KKEEL+  + G+       K+   A ++  S +SA+R
Sbjct: 121 PATVSRSLKYIPELQEQVKKLIKKKEELLVQISGQRNTECYVKQPPKAVANYISTVSATR 180

Query: 181 LSRWEMAIQISTDINGGYRNSLSEILVCLEEEGLLLLNASSFESFDGKVFHNLHLQMG-- 240
           L   E+ +QIS+     +  S+S +L  LEE+  +L++ SS  S   ++F+ LHLQ+   
Sbjct: 181 LGDNEVMVQISSSKIHNF--SISNVLSGLEEDRFVLVDMSSSRSQGERLFYTLHLQVEKI 240

Query: 241 SNCRMEPKMLSTKLLEMF 253
            N ++  + LS ++L ++
Sbjct: 241 ENYKLNCEELSQRMLYLY 250

[Close]
BLAST of Cla001654 vs. Swiss-Prot
Match: ORG2_ARATH (Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.1e-32
Identity = 93/258 (36.05%), Postives = 149/258 (57.75%), Query Frame = 1 

Query: 1   MLALSSPLFSPHQWPLEDPISLHHQNNSLFSPFEASDHSFYLQFPSSPPLQPPNTELDHY 60
           M AL    F+   WP  +      Q  S +   +  ++  +L+        P   E+ H+
Sbjct: 1   MCALVPSFFTNFGWPSTN------QYESYYGAGDNLNNGTFLELTV-----PQTYEVTHH 60

Query: 61  PSS--ATPSPKGGS--NISKMAKKLSHNASERDRRRKINSLYSSLRALLPSTDQMKKLSN 120
            +S   + S +G    N   + KKL+HNASERDRR+KIN+L+SSLR+ LP++DQ KKLS 
Sbjct: 61  QNSLGVSVSSEGNEIDNNPVVVKKLNHNASERDRRKKINTLFSSLRSCLPASDQSKKLSI 120

Query: 121 PATISRILSYIPELQQQVEGLIGKKEELMAAMVGREVKNDEEKKTKCAASSSSSIISASR 180
           P T+S+ L YIPELQQQV+ LI KKEE++  + G+      +K+   A +S  S +SA+R
Sbjct: 121 PETVSKSLKYIPELQQQVKRLIQKKEEILVRVSGQRDFELYDKQQPKAVASYLSTVSATR 180

Query: 181 LSRWEMAIQISTDINGGYRNSLSEILVCLEEEGLLLLNASSFESFDGKVFHNLHLQMGS- 240
           L   E+ +Q+S+     +  S+S +L  +EE+G +L++ SS  S   ++F+ LHLQ+ + 
Sbjct: 181 LGDNEVMVQVSSSKIHNF--SISNVLGGIEEDGFVLVDVSSSRSQGERLFYTLHLQVENM 240

Query: 241 -NCRMEPKMLSTKLLEMF 253
            + ++  + LS ++L ++
Sbjct: 241 DDYKINCEELSERMLYLY 245

[Close]
BLAST of Cla001654 vs. Swiss-Prot
Match: BH100_ARATH (Transcription factor bHLH100 OS=Arabidopsis thaliana GN=BHLH100 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.4e-31
Identity = 97/255 (38.04%), Postives = 146/255 (57.25%), Query Frame = 1 

Query: 1   MLALSSPLFSPHQWPLEDPISLHHQNNSLFSPFEASDHS-FYLQFPSSPPLQPPNTELDH 60
           M AL  PL+    WP  D            S +E  D S  +L FP       P+  + H
Sbjct: 1   MCALVPPLYPNFGWPCGD-----------HSFYETDDVSNTFLDFPL------PDLTVTH 60

Query: 61  YPSSATPSPKGGSNISKMAKKLSHNASERDRRRKINSLYSSLRALLPSTDQMKKLSNPAT 120
              S+  +     N   M KKL+HNASER+RR+KIN+++SSLR+ LP T+Q KKLS  AT
Sbjct: 61  ENVSSENNRTLLDNPVVM-KKLNHNASERERRKKINTMFSSLRSCLPPTNQTKKLSVSAT 120

Query: 121 ISRILSYIPELQQQVEGLIGKKEELMAAMVGRE--VKNDEEKKTKCAASSSSSIISASRL 180
           +S+ L YIPELQ+QV+ L+ KKEEL   + G+   V  D+  K++   +S +S +S++RL
Sbjct: 121 VSQALKYIPELQEQVKKLMKKKEELSFQISGQRDLVYTDQNSKSEEGVTSYASTVSSTRL 180

Query: 181 SRWEMAIQISTDINGGYRNSLSEILVCLEEEGLLLLNASSFESFDGKVFHNLHLQMGSNC 240
           S  E+ +QIS+      + S   +L  +EE+GL+L+ ASS  S   ++F+++HLQ+  N 
Sbjct: 181 SETEVMVQISS--LQTEKCSFGNVLSGVEEDGLVLVGASSSRSHGERLFYSMHLQI-KNG 234

Query: 241 RMEPKMLSTKLLEMF 253
           ++  + L  +LL ++
Sbjct: 241 QVNSEELGDRLLYLY 234

[Close]
BLAST of Cla001654 vs. Swiss-Prot
Match: BH101_ARATH (Transcription factor bHLH101 OS=Arabidopsis thaliana GN=BHLH101 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.0e-30
Identity = 76/175 (43.43%), Postives = 115/175 (65.71%), Query Frame = 1 

Query: 77  MAKKLSHNASERDRRRKINSLYSSLRALLPSTDQMKKLSNPATISRILSYIPELQQQVEG 136
           + KKL+HNASERDRRRK+N+LYSSLRALLP +DQ +KLS P T++R++ YIPE +Q+++ 
Sbjct: 64  LEKKLNHNASERDRRRKLNALYSSLRALLPLSDQKRKLSIPMTVARVVKYIPEQKQELQR 123

Query: 137 LIGKKEELMAAMVGREVKNDEEKKTKCAA--SSSSSIISASRLSRWEMAIQISTDINGGY 196
           L  +KEEL+  +  +  +     K    +  SSSS  I+A+ L+  E+A+QI+T      
Sbjct: 124 LSRRKEELLKRISRKTHQEQLRNKAMMDSIDSSSSQRIAANWLTDTEIAVQIAT----SK 183

Query: 197 RNSLSEILVCLEEEGLLLLNASSFESFDGKVFHNLHLQMGSNCRMEPKMLSTKLL 250
             S+S++L+ LEE GL +++ SS  S   ++F+ LHLQM  +C++  + L   +L
Sbjct: 184 WTSVSDMLLRLEENGLNVISVSSSVSSTARIFYTLHLQMRGDCKVRLEELINGML 234

[Close]
BLAST of Cla001654 vs. Swiss-Prot
Match: BH036_ARATH (Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.5e-07
Identity = 44/141 (31.21%), Postives = 73/141 (51.77%), Query Frame = 1 

Query: 79  KKLSHNASERDRRRKINSLYSSLRALLPSTDQMKKLSNPATISRILSYIPELQQQVEGLI 138
           +K+ H  +ER RR+++ SLY+SLR+LLP      K S    ++  ++YI  LQ++++ L 
Sbjct: 2   EKMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELS 61

Query: 139 GKKEELMAAMVGREV--KNDEEKKTKCAASSSSSIISASRLSRWEMAIQISTDINGGYRN 198
            ++++LM    G  +   N + K+     S  + ++    L   E  I +S+   GG + 
Sbjct: 62  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVE--IMLSSRCCGG-QP 121

Query: 199 SLSEILVCLEEEGLLLLNASS 218
             S +L  L E GL LLN+ S
Sbjct: 122 RFSSVLQVLSEYGLCLLNSIS 139

[Close]
BLAST of Cla001654 vs. TrEMBL
Match: A0A0A0L0Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G434480 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 3.9e-106
Identity = 202/237 (85.23%), Postives = 215/237 (90.72%), Query Frame = 1 

Query: 1   MLALSSPLFSPHQWPLEDPISLHHQNNSLFSPFEASDHSFYLQFPSSPPLQPPNTELDHY 60
           MLA+SSPLFSPHQW  EDPISLHHQ+NSLFSPFE SDHSFYLQFP  PPL P + E DHY
Sbjct: 1   MLAVSSPLFSPHQWQFEDPISLHHQHNSLFSPFEPSDHSFYLQFPP-PPLDPSHGEHDHY 60

Query: 61  PSSATPSPKGGSNISKMAKKLSHNASERDRRRKINSLYSSLRALLPSTDQMKKLSNPATI 120
           PSSA PSP+G SN+SKMAKKLSHNASERDRR+KINSLYSSLRALLPS+DQMKKLSNPATI
Sbjct: 61  PSSAAPSPEGVSNVSKMAKKLSHNASERDRRKKINSLYSSLRALLPSSDQMKKLSNPATI 120

Query: 121 SRILSYIPELQQQVEGLIGKKEELMAAMVGREVKNDEEKKTKCAASSSSSIISASRLSRW 180
           SRILSYIPELQQQVE  + KKEELMAAMVG+EVKNDEEKK K A SSSSSIISASRLSR 
Sbjct: 121 SRILSYIPELQQQVEEQMRKKEELMAAMVGQEVKNDEEKKMKSAVSSSSSIISASRLSRH 180

Query: 181 EMAIQISTDINGGYRNSLSEILVCLEEEGLLLLNASSFESFDGKVFHNLHLQMGSNC 238
           EMAIQISTDINGG RN LSEIL+CLEEEGLLLLNASSFESFDGK+FHNLHLQ+  +C
Sbjct: 181 EMAIQISTDINGGQRNYLSEILICLEEEGLLLLNASSFESFDGKIFHNLHLQILFHC 236

[Close]
BLAST of Cla001654 vs. TrEMBL
Match: D7TIN8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g05300 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.4e-55
Identity = 134/251 (53.39%), Postives = 175/251 (69.72%), Query Frame = 1 

Query: 1   MLALSSPLFSPHQWPLEDPISLHHQNNSLFSPFEASDHSFYLQFPSSPPLQPPNTELDHY 60
           MLA S PLFS   WP EDPIS  H+ N ++   EAS+   +L  PSS P      EL++ 
Sbjct: 1   MLAFSPPLFSTFGWPWEDPIS--HEQNYIYQETEASES--FLHLPSSEP----QAELNY- 60

Query: 61  PSSATPSPKGGSNISKMAKKLSHNASERDRRRKINSLYSSLRALLPSTDQMKKLSNPATI 120
              +TPS     N + M KKL+HNASERDRR+KINSLYSSLR+LLP+ DQ KKLS P+T+
Sbjct: 61  ---STPSAAVSGNPT-MVKKLNHNASERDRRKKINSLYSSLRSLLPAADQAKKLSIPSTV 120

Query: 121 SRILSYIPELQQQVEGLIGKKEELMAAMVGREVKNDEEKKTKCAASSSSSIISASRLSRW 180
           SR+L YIPELQ+QVE LI KKEEL++ +  +     +EK+ K   +SS S +SA+RLS  
Sbjct: 121 SRVLKYIPELQKQVERLIQKKEELLSKISRQGDIIHQEKQRKATLASSLSAVSANRLSDR 180

Query: 181 EMAIQISTDINGGYRNSLSEILVCLEEEGLLLLNASSFESFDGKVFHNLHLQMGSNCRME 240
           E+ +QIST     + + LSE+L+ LEE+GLL++NASSFESF G+VF+NLHLQ+    RME
Sbjct: 181 EIVVQIST--FKVHESPLSEVLLNLEEDGLLVINASSFESFGGRVFYNLHLQVEGTHRME 236

Query: 241 PKMLSTKLLEM 252
            ++LS KLL +
Sbjct: 241 CEVLSEKLLSL 236

[Close]
BLAST of Cla001654 vs. TrEMBL
Match: A5C6G0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031510 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 9.1e-55
Identity = 133/251 (52.99%), Postives = 174/251 (69.32%), Query Frame = 1 

Query: 1   MLALSSPLFSPHQWPLEDPISLHHQNNSLFSPFEASDHSFYLQFPSSPPLQPPNTELDHY 60
           MLA S PLFS   WP EDP S  H+ N ++   EAS+   +L  PSS P      EL++ 
Sbjct: 1   MLAFSPPLFSTFGWPWEDPXS--HEQNYIYQETEASES--FLHLPSSEP----QAELNY- 60

Query: 61  PSSATPSPKGGSNISKMAKKLSHNASERDRRRKINSLYSSLRALLPSTDQMKKLSNPATI 120
              +TPS     N + M KKL+HNASERDRR+KINSLYSSLR+LLP+ DQ KKLS P+T+
Sbjct: 61  ---STPSAAVSGNPT-MVKKLNHNASERDRRKKINSLYSSLRSLLPAADQAKKLSIPSTV 120

Query: 121 SRILSYIPELQQQVEGLIGKKEELMAAMVGREVKNDEEKKTKCAASSSSSIISASRLSRW 180
           SR+L YIPELQ+QVE LI KKEEL++ +  +     +EK+ K   +SS S +SA+RLS  
Sbjct: 121 SRVLKYIPELQKQVERLIQKKEELLSKISRQGDIIHQEKQRKATLASSLSAVSANRLSDR 180

Query: 181 EMAIQISTDINGGYRNSLSEILVCLEEEGLLLLNASSFESFDGKVFHNLHLQMGSNCRME 240
           E+ +QIST     + + LSE+L+ LEE+GLL++NASSFESF G+VF+NLHLQ+    RME
Sbjct: 181 EIVVQIST--FKVHESPLSEVLLNLEEDGLLVINASSFESFGGRVFYNLHLQVEGTHRME 236

Query: 241 PKMLSTKLLEM 252
            ++LS KLL +
Sbjct: 241 CEVLSEKLLSL 236

[Close]
BLAST of Cla001654 vs. TrEMBL
Match: B9H8U2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s03590g PE=4 SV=2)

HSP 1 Score: 206.8 bits (525), Expect = 3.0e-50
Identity = 127/245 (51.84%), Postives = 160/245 (65.31%), Query Frame = 1 

Query: 8   LFSPHQWPLEDPISLHHQNNSLFSPFEASDHSFYLQFPSSPPLQPPNTELDHYPSSATPS 67
           LFS   WPLE+PIS  H+ N  F   E         F   PP QP   ELDH  S    S
Sbjct: 9   LFSTFGWPLEEPIS--HEQNYSFRDCETPG-----SFTHFPPSQPNIRELDHSTSFTAYS 68

Query: 68  PKGGSNISKMAKKLSHNASERDRRRKINSLYSSLRALLPSTDQMKKLSNPATISRILSYI 127
             G  N   M KKL+HNASERDRR+KINSLYSSLR+LLP++D MKKLS P+TISR+L YI
Sbjct: 69  GSGDPN---MVKKLNHNASERDRRKKINSLYSSLRSLLPASDGMKKLSIPSTISRVLKYI 128

Query: 128 PELQQQVEGLIGKKEELMAAMVGREVKNDEEKKTKCAASSSSSIISASRLSRWEMAIQIS 187
           PELQQQVE  I +KEEL++ +  ++    +E + K    SS S +SASRL   E+ +QIS
Sbjct: 129 PELQQQVERRIQRKEELLSNLSRQDDLIHQENQRKDTMYSSLSSVSASRLGDREVVVQIS 188

Query: 188 TDINGGYRNSLSEILVCLEEEGLLLLNASSFESFDGKVFHNLHLQ-MGSNCRMEPKMLST 247
           T      ++ +SEIL+ LEE GL+L+N+SSFESF G VF++LHLQ M  NC +E + L+ 
Sbjct: 189 T--CKVLKSPISEILLNLEENGLVLINSSSFESFGGNVFYHLHLQVMEGNCTLECEALNE 241

Query: 248 KLLEM 252
           KLL +
Sbjct: 249 KLLSL 241

[Close]
BLAST of Cla001654 vs. TrEMBL
Match: M5WEE6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018670mg PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.9e-50
Identity = 136/258 (52.71%), Postives = 170/258 (65.89%), Query Frame = 1 

Query: 1   MLALSSPLFSPHQWPLEDPISLHHQNNSLFSPFEASDHSFYLQFPSSPPLQPPNTELDHY 60
           MLALS P FS   WPLEDP S H QN      F       +L    + P Q P  E    
Sbjct: 1   MLALSPPSFSTIGWPLEDPKS-HDQNYFYRDSFTDQIAESFLH---TLPSQLPQVE---- 60

Query: 61  PSSATPSPK---GGSNISKMAKKLSHNASERDRRRKINSLYSSLRALLPSTDQMKKLSNP 120
           P+ +TPS     G + +S M KKL+HNASERDRR+KINSLYSSLR+LLP+ DQMKKLS P
Sbjct: 61  PTRSTPSTTVSGGYAGVSTMVKKLNHNASERDRRQKINSLYSSLRSLLPA-DQMKKLSIP 120

Query: 121 ATISRILSYIPELQQQVEGLIGKKEELMAAMVGREVKN-DEEKKTKCAASSSSSI--ISA 180
            TISR++ YIPELQ+QVEGLI K+EEL+  +  +E +   EEKK K  A + SS+  +S 
Sbjct: 121 NTISRVVKYIPELQKQVEGLIRKREELLVRISKQEDQELHEEKKMKSTAGTGSSLSAVST 180

Query: 181 SRLSRWEMAIQISTDINGGYRNSLSEILVCLEEEGLLLLNASSFESFDGKVFHNLHLQMG 240
            RL+  E+AIQIST     + N LSEIL+ LEEEGL +LNASSFES   +VF+NLHLQ+ 
Sbjct: 181 YRLNDREVAIQISTLKT--HNNLLSEILLNLEEEGLQILNASSFESSGERVFYNLHLQVE 240

Query: 241 SNCRMEPKMLSTKLLEMF 253
            + R+E + LS KL+  +
Sbjct: 241 RSYRLECENLSEKLMSFY 247

[Close]
BLAST of Cla001654 vs. NCBI nr
Match: gi|778694754|ref|XP_004144337.2| (PREDICTED: transcription factor bHLH100-like [Cucumis sativus])

HSP 1 Score: 429.1 bits (1102), Expect = 5.4e-117
Identity = 220/253 (86.96%), Postives = 231/253 (91.30%), Query Frame = 1 

Query: 1   MLALSSPLFSPHQWPLEDPISLHHQNNSLFSPFEASDHSFYLQFPSSPPLQPPNTELDHY 60
           MLA+SSPLFSPHQW  EDPISLHHQ+NSLFSPFE SDHSFYLQFP  PPL P + E DHY
Sbjct: 1   MLAVSSPLFSPHQWQFEDPISLHHQHNSLFSPFEPSDHSFYLQFPP-PPLDPSHGEHDHY 60

Query: 61  PSSATPSPKGGSNISKMAKKLSHNASERDRRRKINSLYSSLRALLPSTDQMKKLSNPATI 120
           PSSA PSP+G SN+SKMAKKLSHNASERDRR+KINSLYSSLRALLPS+DQMKKLSNPATI
Sbjct: 61  PSSAAPSPEGVSNVSKMAKKLSHNASERDRRKKINSLYSSLRALLPSSDQMKKLSNPATI 120

Query: 121 SRILSYIPELQQQVEGLIGKKEELMAAMVGREVKNDEEKKTKCAASSSSSIISASRLSRW 180
           SRILSYIPELQQQVE  + KKEELMAAMVG+EVKNDEEKK K A SSSSSIISASRLSR 
Sbjct: 121 SRILSYIPELQQQVEEQMRKKEELMAAMVGQEVKNDEEKKMKSAVSSSSSIISASRLSRH 180

Query: 181 EMAIQISTDINGGYRNSLSEILVCLEEEGLLLLNASSFESFDGKVFHNLHLQMGSNCRME 240
           EMAIQISTDINGG RN LSEIL+CLEEEGLLLLNASSFESFDGK+FHNLHLQMGSNCRME
Sbjct: 181 EMAIQISTDINGGQRNYLSEILICLEEEGLLLLNASSFESFDGKIFHNLHLQMGSNCRME 240

Query: 241 PKMLSTKLLEMFP 254
           PKMLS  LLEMFP
Sbjct: 241 PKMLSNMLLEMFP 252

[Close]
BLAST of Cla001654 vs. NCBI nr
Match: gi|659111345|ref|XP_008455703.1| (PREDICTED: transcription factor bHLH100-like [Cucumis melo])

HSP 1 Score: 420.2 bits (1079), Expect = 2.5e-114
Identity = 219/253 (86.56%), Postives = 230/253 (90.91%), Query Frame = 1 

Query: 1   MLALSSPLFSPHQWPLEDPISLHHQNNSLFSPFEASDHSFYLQFPSSPPLQPPNTELDHY 60
           MLA+SSPLFSPHQW LEDPISLHHQ+NSLFSPFE SDHSFYLQFP  PPL P +   DHY
Sbjct: 1   MLAVSSPLFSPHQWQLEDPISLHHQHNSLFSPFEPSDHSFYLQFPP-PPLDPSH---DHY 60

Query: 61  PSSATPSPKGGSNISKMAKKLSHNASERDRRRKINSLYSSLRALLPSTDQMKKLSNPATI 120
           PSSA PSP+  SN+SKMAKKLSHNASERDRR+KINSLYSSLRALLPS+DQMKKLSNPATI
Sbjct: 61  PSSAAPSPEAVSNVSKMAKKLSHNASERDRRKKINSLYSSLRALLPSSDQMKKLSNPATI 120

Query: 121 SRILSYIPELQQQVEGLIGKKEELMAAMVGREVKNDEEKKTKCAASSSSSIISASRLSRW 180
           SRILSYIPELQQQVEG + KKEELMAAMVG+EVKNDEEKK K AASSSSSIISASRLSR 
Sbjct: 121 SRILSYIPELQQQVEGQMRKKEELMAAMVGQEVKNDEEKKMKSAASSSSSIISASRLSRH 180

Query: 181 EMAIQISTDINGGYRNSLSEILVCLEEEGLLLLNASSFESFDGKVFHNLHLQMGSNCRME 240
           EMAIQISTDING  RN LSEIL CLEEEGLLLLNASSFESFDGKVFHNLHLQMGSNC+ME
Sbjct: 181 EMAIQISTDINGCQRNYLSEILCCLEEEGLLLLNASSFESFDGKVFHNLHLQMGSNCKME 240

Query: 241 PKMLSTKLLEMFP 254
           PK+LS  LLEMFP
Sbjct: 241 PKVLSNMLLEMFP 249

[Close]
BLAST of Cla001654 vs. NCBI nr
Match: gi|700199566|gb|KGN54724.1| (hypothetical protein Csa_4G434480 [Cucumis sativus])

HSP 1 Score: 392.5 bits (1007), Expect = 5.6e-106
Identity = 202/237 (85.23%), Postives = 215/237 (90.72%), Query Frame = 1 

Query: 1   MLALSSPLFSPHQWPLEDPISLHHQNNSLFSPFEASDHSFYLQFPSSPPLQPPNTELDHY 60
           MLA+SSPLFSPHQW  EDPISLHHQ+NSLFSPFE SDHSFYLQFP  PPL P + E DHY
Sbjct: 1   MLAVSSPLFSPHQWQFEDPISLHHQHNSLFSPFEPSDHSFYLQFPP-PPLDPSHGEHDHY 60

Query: 61  PSSATPSPKGGSNISKMAKKLSHNASERDRRRKINSLYSSLRALLPSTDQMKKLSNPATI 120
           PSSA PSP+G SN+SKMAKKLSHNASERDRR+KINSLYSSLRALLPS+DQMKKLSNPATI
Sbjct: 61  PSSAAPSPEGVSNVSKMAKKLSHNASERDRRKKINSLYSSLRALLPSSDQMKKLSNPATI 120

Query: 121 SRILSYIPELQQQVEGLIGKKEELMAAMVGREVKNDEEKKTKCAASSSSSIISASRLSRW 180
           SRILSYIPELQQQVE  + KKEELMAAMVG+EVKNDEEKK K A SSSSSIISASRLSR 
Sbjct: 121 SRILSYIPELQQQVEEQMRKKEELMAAMVGQEVKNDEEKKMKSAVSSSSSIISASRLSRH 180

Query: 181 EMAIQISTDINGGYRNSLSEILVCLEEEGLLLLNASSFESFDGKVFHNLHLQMGSNC 238
           EMAIQISTDINGG RN LSEIL+CLEEEGLLLLNASSFESFDGK+FHNLHLQ+  +C
Sbjct: 181 EMAIQISTDINGGQRNYLSEILICLEEEGLLLLNASSFESFDGKIFHNLHLQILFHC 236

[Close]
BLAST of Cla001654 vs. NCBI nr
Match: gi|731400480|ref|XP_010653965.1| (PREDICTED: transcription factor ORG2 [Vitis vinifera])

HSP 1 Score: 223.8 bits (569), Expect = 3.4e-55
Identity = 134/251 (53.39%), Postives = 175/251 (69.72%), Query Frame = 1 

Query: 1   MLALSSPLFSPHQWPLEDPISLHHQNNSLFSPFEASDHSFYLQFPSSPPLQPPNTELDHY 60
           MLA S PLFS   WP EDPIS  H+ N ++   EAS+   +L  PSS P      EL++ 
Sbjct: 1   MLAFSPPLFSTFGWPWEDPIS--HEQNYIYQETEASES--FLHLPSSEP----QAELNY- 60

Query: 61  PSSATPSPKGGSNISKMAKKLSHNASERDRRRKINSLYSSLRALLPSTDQMKKLSNPATI 120
              +TPS     N + M KKL+HNASERDRR+KINSLYSSLR+LLP+ DQ KKLS P+T+
Sbjct: 61  ---STPSAAVSGNPT-MVKKLNHNASERDRRKKINSLYSSLRSLLPAADQAKKLSIPSTV 120

Query: 121 SRILSYIPELQQQVEGLIGKKEELMAAMVGREVKNDEEKKTKCAASSSSSIISASRLSRW 180
           SR+L YIPELQ+QVE LI KKEEL++ +  +     +EK+ K   +SS S +SA+RLS  
Sbjct: 121 SRVLKYIPELQKQVERLIQKKEELLSKISRQGDIIHQEKQRKATLASSLSAVSANRLSDR 180

Query: 181 EMAIQISTDINGGYRNSLSEILVCLEEEGLLLLNASSFESFDGKVFHNLHLQMGSNCRME 240
           E+ +QIST     + + LSE+L+ LEE+GLL++NASSFESF G+VF+NLHLQ+    RME
Sbjct: 181 EIVVQIST--FKVHESPLSEVLLNLEEDGLLVINASSFESFGGRVFYNLHLQVEGTHRME 236

Query: 241 PKMLSTKLLEM 252
            ++LS KLL +
Sbjct: 241 CEVLSEKLLSL 236

[Close]
BLAST of Cla001654 vs. NCBI nr
Match: gi|147800349|emb|CAN64266.1| (hypothetical protein VITISV_031510 [Vitis vinifera])

HSP 1 Score: 221.9 bits (564), Expect = 1.3e-54
Identity = 133/251 (52.99%), Postives = 174/251 (69.32%), Query Frame = 1 

Query: 1   MLALSSPLFSPHQWPLEDPISLHHQNNSLFSPFEASDHSFYLQFPSSPPLQPPNTELDHY 60
           MLA S PLFS   WP EDP S  H+ N ++   EAS+   +L  PSS P      EL++ 
Sbjct: 1   MLAFSPPLFSTFGWPWEDPXS--HEQNYIYQETEASES--FLHLPSSEP----QAELNY- 60

Query: 61  PSSATPSPKGGSNISKMAKKLSHNASERDRRRKINSLYSSLRALLPSTDQMKKLSNPATI 120
              +TPS     N + M KKL+HNASERDRR+KINSLYSSLR+LLP+ DQ KKLS P+T+
Sbjct: 61  ---STPSAAVSGNPT-MVKKLNHNASERDRRKKINSLYSSLRSLLPAADQAKKLSIPSTV 120

Query: 121 SRILSYIPELQQQVEGLIGKKEELMAAMVGREVKNDEEKKTKCAASSSSSIISASRLSRW 180
           SR+L YIPELQ+QVE LI KKEEL++ +  +     +EK+ K   +SS S +SA+RLS  
Sbjct: 121 SRVLKYIPELQKQVERLIQKKEELLSKISRQGDIIHQEKQRKATLASSLSAVSANRLSDR 180

Query: 181 EMAIQISTDINGGYRNSLSEILVCLEEEGLLLLNASSFESFDGKVFHNLHLQMGSNCRME 240
           E+ +QIST     + + LSE+L+ LEE+GLL++NASSFESF G+VF+NLHLQ+    RME
Sbjct: 181 EIVVQIST--FKVHESPLSEVLLNLEEDGLLVINASSFESFGGRVFYNLHLQVEGTHRME 236

Query: 241 PKMLSTKLLEM 252
            ++LS KLL +
Sbjct: 241 CEVLSEKLLSL 236

The following BLAST results are available for this feature:
BLAST of Cla001654 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ORG3_ARATH6.3e-3337.98Transcription factor ORG3 OS=Arabidopsis thaliana GN=ORG3 PE=1 SV=1[more]
ORG2_ARATH9.1e-3236.05Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1[more]
BH100_ARATH3.4e-3138.04Transcription factor bHLH100 OS=Arabidopsis thaliana GN=BHLH100 PE=2 SV=1[more]
BH101_ARATH5.0e-3043.43Transcription factor bHLH101 OS=Arabidopsis thaliana GN=BHLH101 PE=2 SV=1[more]
BH036_ARATH3.5e-0731.21Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1[more]
BLAST of Cla001654 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0Z2_CUCSA3.9e-10685.23Uncharacterized protein OS=Cucumis sativus GN=Csa_4G434480 PE=4 SV=1[more]
D7TIN8_VITVI2.4e-5553.39Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g05300 PE=4 SV=... [more]
A5C6G0_VITVI9.1e-5552.99Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031510 PE=4 SV=1[more]
B9H8U2_POPTR3.0e-5051.84Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s03590g PE=4 SV=2[more]
M5WEE6_PRUPE3.9e-5052.71Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018670mg PE=4 SV=1[more]
BLAST of Cla001654 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778694754|ref|XP_004144337.2|5.4e-11786.96PREDICTED: transcription factor bHLH100-like [Cucumis sativus][more]
gi|659111345|ref|XP_008455703.1|2.5e-11486.56PREDICTED: transcription factor bHLH100-like [Cucumis melo][more]
gi|700199566|gb|KGN54724.1|5.6e-10685.23hypothetical protein Csa_4G434480 [Cucumis sativus][more]
gi|731400480|ref|XP_010653965.1|3.4e-5553.39PREDICTED: transcription factor ORG2 [Vitis vinifera][more]
gi|147800349|emb|CAN64266.1|1.3e-5452.99hypothetical protein VITISV_031510 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR015660MASH1/Ascl1a-like
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001654Cla001654.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 79..145
score: 1.4
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 79..131
score: 2.0
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 84..136
score: 6.7
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 78..130
score: 14
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 78..147
score: 6.15
IPR015660Achaete-scute transcription factor-relatedPANTHERPTHR13935ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATEDcoord: 19..251
score: 3.0
NoneNo IPR availableunknownCoilCoilcoord: 127..147
scor
NoneNo IPR availablePANTHERPTHR13935:SF41ACHAETE-SCUTE HOMOLOG 3coord: 19..251
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001654Watermelon (Charleston Gray)wcgwmB257
Cla001654Cucumber (Chinese Long) v2cuwmB336
Cla001654Cucurbita pepo (Zucchini)cpewmB497
Cla001654Bottle gourd (USVL1VR-Ls)lsiwmB149
Cla001654Silver-seed gourdcarwmB0471
Cla001654Watermelon (97103) v2wmwmbB293
Cla001654Cucumber (Gy14) v1cgywmB325
Cla001654Cucurbita maxima (Rimu)cmawmB834
Cla001654Cucurbita moschata (Rifu)cmowmB822