Cla001653 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001653
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	BHLH transcription factor-like (AHRD V1 -- Q941Z7_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding
Location	Chr4 : 12589940 .. 12591688 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGCCATAGTCCCTTCATCATTTACAACTCAGGGTGAGTGGCTTTCACAGAATGCTCTGATCAGCAACCAGTGGACAGCCGGCGGCAGTGGTGGCATATCGGAGTCGTTCATTCAGTTCTCTTCGCCGCTATCATCTCAACAGGTTAGACTAGAGAGCTGCTCTCCCCCATCAGCTGGTAACGGTGGTCGACGTGGCGCTGAAGGTATGGGTGATGGTAACGATCTCACCGCCGTGGCTAAGAAACTTAAACACAATGCTAGCGAGCGCGACCGTCGAAGGAAGATCAACTCTCTCTATTACTCTCTCCGTTGCTTGCTTCCTCCTACAAACCCAATGGTAGGTTCTTCATCATATATACATCAAATATATGGACGTGGGAAATAGCCATTTTAAATTCATATCTTCCCTTATTTAATATTATGTTAAAGAAACATTTTTTTCTAAACTTCCTTGTGGAAGTAACAGTTTAATCTATGAACTTTTAGTTTGTGACGATTTAGTTTTTATACTTCCAAATTCGTAACAATTTAGTCTTTATACTTCTAAACTTAGTTGATTTGCACTTCTAAATTTGTAAGAATCAATTTAATTAATTTCTAAAATGTCTACCAAATTTAATTCTTCATTTTGATTCATGTGACGGTTTAGACTTTTTAATTTATAACACAAGGACTAAATTATTATAAATTCAAAAGTACAGAGATTAAATCGTTATAAATCAAAGTTCAAAAACTAAGTTGTTACTTTTATGAAAGTTCAAGGATGAAAATGGTTTTTAACGTTTGTTTTATAAGACAAACTGACAAATATAAGGTTCTGATCCATTCTCAAAACCAATTATTGGCAATTGGAAGAATAGCCTATTATAACCATCTAGTTTTTTATATTTAAAATTAAGGTTAATAAACATTATTTTCACCTATAAATTTCTACATTTTATTATCTAGTTTCTACTAATGTTTTTAAAAAATCAAATCAAGTTTTGCAAACTAAAAAGAAAGTAGTTTTTGTTTTTAGAATTTAACTAGGAACGACTCAGTGTTTCTTTTATAAAGATAAAAACCATAATGGAAAAATCAGACTAAACAAACATAAACTCCAAAAAGACAAAAAAAATAAATTGCCAACGAATGGGGTCTTAGAAAATGAATTTAGATGAATTTGGTTATCTCAGAAGTGAATTTTATTCATTACCGAAAACTATATTATATTTTGACGAAAACATTTTATGCCTCGAAGAATAACTTCATGAACTTGATCCAAAATACACCTTGAATTTTCTTGACCTAATGGTTATGGCAGAAAAGAATGAGTAATCCAAGCACAATATCAAGGGCATTGAAGTACATTCCAGAGGTTCAACAGCAAGTAGAGGGGCTTAGGAGAAGGAAGCAAGACCTTGTCACAAAGATTAATGCCACAACTTATGAAGAAAAGCAGATAAGGAAAAACCCTAAGGAAGCATGGATGAGTTCTTTGTGTGATGTGAATTGGCTAAGTGAAACTGAAGCACTTCTTCAAATAGCCTCAGAAGAAACCCTCAAACCACATCCATTTTCACAAATTCTCCTTTCTCTAGAGGAGGATGGGCTTCTTCTTTTGAGTGCTTCTTCCTTTCAGTCCTTTGATGGGAGGCTCTTCTTCACCTTGCTCCTTCAGGTATGTTTGATTGATAGGCCCCTGCTTAGTAATCATTTTGATTTTAGGCTACGTTATACTAAACCGTAATGAAAATAGGTGTAA

mRNA sequence

ATGTTAGCCATAGTCCCTTCATCATTTACAACTCAGGGTGAGTGGCTTTCACAGAATGCTCTGATCAGCAACCAGTGGACAGCCGGCGGCAGTGGTGGCATATCGGAGTCGTTCATTCAGTTCTCTTCGCCGCTATCATCTCAACAGGTTAGACTAGAGAGCTGCTCTCCCCCATCAGCTGGTAACGGTGGTCGACGTGGCGCTGAAGGTATGGGTGATGGTAACGATCTCACCGCCGTGGCTAAGAAACTTAAACACAATGCTAGCGAGCGCGACCGTCGAAGGAAGATCAACTCTCTCTATTACTCTCTCCGTTGCTTGCTTCCTCCTACAAACCCAATGAAAAGAATGAGTAATCCAAGCACAATATCAAGGGCATTGAAGTACATTCCAGAGGTTCAACAGCAAGTAGAGGGGCTTAGGAGAAGGAAGCAAGACCTTGTCACAAAGATTAATGCCACAACTTATGAAGAAAAGCAGATAAGGAAAAACCCTAAGGAAGCATGGATGAGTTCTTTGTGTGATGTGAATTGGCTAAGTGAAACTGAAGCACTTCTTCAAATAGCCTCAGAAGAAACCCTCAAACCACATCCATTTTCACAAATTCTCCTTTCTCTAGAGGAGGATGGGCTTCTTCTTTTGAGTGCTTCTTCCTTTCAGTCCTTTGATGGGAGGCTCTTCTTCACCTTGCTCCTTCAGGTGTAA

Coding sequence (CDS)

ATGTTAGCCATAGTCCCTTCATCATTTACAACTCAGGGTGAGTGGCTTTCACAGAATGCTCTGATCAGCAACCAGTGGACAGCCGGCGGCAGTGGTGGCATATCGGAGTCGTTCATTCAGTTCTCTTCGCCGCTATCATCTCAACAGGTTAGACTAGAGAGCTGCTCTCCCCCATCAGCTGGTAACGGTGGTCGACGTGGCGCTGAAGGTATGGGTGATGGTAACGATCTCACCGCCGTGGCTAAGAAACTTAAACACAATGCTAGCGAGCGCGACCGTCGAAGGAAGATCAACTCTCTCTATTACTCTCTCCGTTGCTTGCTTCCTCCTACAAACCCAATGAAAAGAATGAGTAATCCAAGCACAATATCAAGGGCATTGAAGTACATTCCAGAGGTTCAACAGCAAGTAGAGGGGCTTAGGAGAAGGAAGCAAGACCTTGTCACAAAGATTAATGCCACAACTTATGAAGAAAAGCAGATAAGGAAAAACCCTAAGGAAGCATGGATGAGTTCTTTGTGTGATGTGAATTGGCTAAGTGAAACTGAAGCACTTCTTCAAATAGCCTCAGAAGAAACCCTCAAACCACATCCATTTTCACAAATTCTCCTTTCTCTAGAGGAGGATGGGCTTCTTCTTTTGAGTGCTTCTTCCTTTCAGTCCTTTGATGGGAGGCTCTTCTTCACCTTGCTCCTTCAGGTGTAA

Protein sequence

MLAIVPSSFTTQGEWLSQNALISNQWTAGGSGGISESFIQFSSPLSSQQVRLESCSPPSAGNGGRRGAEGMGDGNDLTAVAKKLKHNASERDRRRKINSLYYSLRCLLPPTNPMKRMSNPSTISRALKYIPEVQQQVEGLRRRKQDLVTKINATTYEEKQIRKNPKEAWMSSLCDVNWLSETEALLQIASEETLKPHPFSQILLSLEEDGLLLLSASSFQSFDGRLFFTLLLQV

Homology

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BLAST of Cla001653 vs. Swiss-Prot
Match: BH101_ARATH (Transcription factor bHLH101 OS=Arabidopsis thaliana GN=BHLH101 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.1e-29
Identity = 78/201 (38.81%), Postives = 116/201 (57.71%), Query Frame = 1


Query: 37  SFIQFSSPLSSQQVRLESCSPPSAGNGGRRGAEGMGDGNDLTAVAKKLKHNASERDRRRK 96
           SF+       S  + L   S   + N          +      + KKL HNASERDRRRK
Sbjct: 21  SFLHPLDDSKSHNINLHHMSLSHSNNTNSNNNNYQEEDRGAVVLEKKLNHNASERDRRRK 80

Query: 97  INSLYYSLRCLLPPTNPMKRMSNPSTISRALKYIPEVQQQVEGLRRRKQDLVTKINATTY 156
           +N+LY SLR LLP ++  +++S P T++R +KYIPE +Q+++ L RRK++L+ +I+  T+
Sbjct: 81  LNALYSSLRALLPLSDQKRKLSIPMTVARVVKYIPEQKQELQRLSRRKEELLKRISRKTH 140

Query: 157 EEKQIRKNPKEAWMSSLCD---VNWLSETEALLQIASEETLKPHPFSQILLSLEEDGLLL 216
           +E+   K   ++  SS       NWL++TE  +QIA   T K    S +LL LEE+GL +
Sbjct: 141 QEQLRNKAMMDSIDSSSSQRIAANWLTDTEIAVQIA---TSKWTSVSDMLLRLEENGLNV 200

Query: 217 LSASSFQSFDGRLFFTLLLQV 235
           +S SS  S   R+F+TL LQ+
Sbjct: 201 ISVSSSVSSTARIFYTLHLQM 218

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BLAST of Cla001653 vs. Swiss-Prot
Match: ORG2_ARATH (Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-28
Identity = 88/237 (37.13%), Postives = 134/237 (56.54%), Query Frame = 1


Query: 1   MLAIVPSSFTTQGEWLSQNALISNQWTAGGSGGISESFIQFSSPLSSQQVRLESCSPPSA 60
           M A+VPS FT  G W S N   S  +   G    + +F++ + P + +    ++    S 
Sbjct: 1   MCALVPSFFTNFG-WPSTNQYES--YYGAGDNLNNGTFLELTVPQTYEVTHHQNSLGVSV 60

Query: 61  GNGGRRGAEGMGDGNDLTAVAKKLKHNASERDRRRKINSLYYSLRCLLPPTNPMKRMSNP 120
            + G        D N +  V KKL HNASERDRR+KIN+L+ SLR  LP ++  K++S P
Sbjct: 61  SSEGNEI-----DNNPV--VVKKLNHNASERDRRKKINTLFSSLRSCLPASDQSKKLSIP 120

Query: 121 STISRALKYIPEVQQQVEGLRRRKQDLVTKINATTYEEKQIRKNPKE-AWMSSLCDVNWL 180
            T+S++LKYIPE+QQQV+ L ++K++++ +++     E   ++ PK  A   S      L
Sbjct: 121 ETVSKSLKYIPELQQQVKRLIQKKEEILVRVSGQRDFELYDKQQPKAVASYLSTVSATRL 180

Query: 181 SETEALLQIASEETLKPHPF--SQILLSLEEDGLLLLSASSFQSFDGRLFFTLLLQV 235
            + E ++Q++S    K H F  S +L  +EEDG +L+  SS +S   RLF+TL LQV
Sbjct: 181 GDNEVMVQVSSS---KIHNFSISNVLGGIEEDGFVLVDVSSSRSQGERLFYTLHLQV 224

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BLAST of Cla001653 vs. Swiss-Prot
Match: BH100_ARATH (Transcription factor bHLH100 OS=Arabidopsis thaliana GN=BHLH100 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.3e-28
Identity = 71/162 (43.83%), Postives = 106/162 (65.43%), Query Frame = 1


Query: 76  DLTAVAKKLKHNASERDRRRKINSLYYSLRCLLPPTNPMKRMSNPSTISRALKYIPEVQQ 135
           D   V KKL HNASER+RR+KIN+++ SLR  LPPTN  K++S  +T+S+ALKYIPE+Q+
Sbjct: 56  DNPVVMKKLNHNASERERRKKINTMFSSLRSCLPPTNQTKKLSVSATVSQALKYIPELQE 115

Query: 136 QVEGLRRRKQDLVTKINA---TTYEEKQIRKNPKEAWMSSLCDVNWLSETEALLQIASEE 195
           QV+ L ++K++L  +I+      Y ++  +        +S      LSETE ++QI+S +
Sbjct: 116 QVKKLMKKKEELSFQISGQRDLVYTDQNSKSEEGVTSYASTVSSTRLSETEVMVQISSLQ 175

Query: 196 TLKPHPFSQILLSLEEDGLLLLSASSFQSFDGRLFFTLLLQV 235
           T K   F  +L  +EEDGL+L+ ASS +S   RLF+++ LQ+
Sbjct: 176 TEK-CSFGNVLSGVEEDGLVLVGASSSRSHGERLFYSMHLQI 216

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BLAST of Cla001653 vs. Swiss-Prot
Match: ORG3_ARATH (Transcription factor ORG3 OS=Arabidopsis thaliana GN=ORG3 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 9.6e-28
Identity = 77/174 (44.25%), Postives = 108/174 (62.07%), Query Frame = 1


Query: 67  GAEGMGDGNDLT---AVAKKLKHNASERDRRRKINSLYYSLRCLLPPTNPMKRMSNPSTI 126
           G     +GN++     V KKL HNASERDRRRKINSL+ SLR  LP +   K++S P+T+
Sbjct: 59  GVSVSSEGNEIDNNPVVVKKLNHNASERDRRRKINSLFSSLRSCLPASGQSKKLSIPATV 118

Query: 127 SRALKYIPEVQQQVEGLRRRKQDLVTKINATTYEEKQIRKNPKE-AWMSSLCDVNWLSET 186
           SR+LKYIPE+Q+QV+ L ++K++L+ +I+     E  +++ PK  A   S      L + 
Sbjct: 119 SRSLKYIPELQEQVKKLIKKKEELLVQISGQRNTECYVKQPPKAVANYISTVSATRLGDN 178

Query: 187 EALLQIASEETLKPHPF--SQILLSLEEDGLLLLSASSFQSFDGRLFFTLLLQV 235
           E ++QI+S    K H F  S +L  LEED  +L+  SS +S   RLF+TL LQV
Sbjct: 179 EVMVQISSS---KIHNFSISNVLSGLEEDRFVLVDMSSSRSQGERLFYTLHLQV 229

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BLAST of Cla001653 vs. Swiss-Prot
Match: BH126_ARATH (Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-06
Identity = 43/178 (24.16%), Postives = 77/178 (43.26%), Query Frame = 1


Query: 59  SAGNGGRRGAEGMGDGNDLTAVAKKLKHNASERDRRRKINSLYYSLRCLLPPTNPMKRMS 118
           SAG  G  G  G     D     KKL H   ER RR+++ +L+ +LR  LP      + +
Sbjct: 20  SAGESGGSGGSGTAHETDDNKKKKKLLHRDIERQRRQEMATLFATLRTHLPLKYIKGKRA 79

Query: 119 NPSTISRALKYIPEVQQQVEGLRRRKQDLVTKINATTYEEKQIRKNPKEAWMSSLCDVNW 178
               ++ A+ +I + + +++ L  R+ +L  +            K   +   S    V  
Sbjct: 80  VSDHVNGAVNFIKDTEARIKELSARRDELSRETGQGYKSNPDPGKTGSDVGKSEPATVMV 139

Query: 179 LSETEALLQIASEETLKPH--PFSQILLSLEEDGLLLLSASSFQSFDGRLFFTLLLQV 235
                 L  + S  +  P   P S++L +++E GL ++S+ + +  D RL  T+ ++V
Sbjct: 140 QPHVSGLEVVVSSNSSGPEALPLSKVLETIQEKGLEVMSSFTTRVND-RLMHTIQVEV 196

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BLAST of Cla001653 vs. TrEMBL
Match: A0A0A0KYH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G434980 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.0e-39
Identity = 94/120 (78.33%), Postives = 102/120 (85.00%), Query Frame = 1


Query: 115 KRMSNPSTISRALKYIPEVQQQVEGLRRRKQDLVTKINATTYEEKQIRKNPKEAWMSSLC 174
           KRMSNPSTIS+ALKYIPE+QQQVEGLRRRK+ LVTK+N      KQIRKN KE WMSS C
Sbjct: 6   KRMSNPSTISKALKYIPELQQQVEGLRRRKEGLVTKLNEENL--KQIRKNNKEPWMSSFC 65

Query: 175 DVNWLSETEALLQIASE-ETLKPHPFSQILLSLEEDGLLLLSASSFQSFDGRLFFTLLLQ 234
            VNWLSETEALLQIA E +T    PFSQILLSLEEDGLLLL+ASSF+SF+GRLF TLLLQ
Sbjct: 66  AVNWLSETEALLQIALEDQTHTQLPFSQILLSLEEDGLLLLTASSFRSFNGRLFLTLLLQ 123

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BLAST of Cla001653 vs. TrEMBL
Match: M5WCF6_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019552mg PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-37
Identity = 100/206 (48.54%), Postives = 138/206 (66.99%), Query Frame = 1


Query: 35  SESFIQFSSPLSSQQVRLESCSPPSAGNGGRRGAEGMGDGNDLTAVAKKLKHNASERDRR 94
           +ESF+   SP   Q+V     +P S  +GGR          DLT V KKL HNASERD R
Sbjct: 10  AESFLHCVSP--HQRVDQFEFTPSSPMSGGR----------DLTVV-KKLNHNASERDDR 69

Query: 95  RKINSLYYSLRCLLPPTNPMKRMSNPSTISRALKYIPEVQQQVEGLRRRKQDLVTKINA- 154
           +KIN+LY +LR LLP +  MK++SNP+ ISRA+KYIPE+QQQV+GL ++K++L++++   
Sbjct: 70  KKINTLYSTLRSLLPASYQMKKLSNPAAISRAVKYIPELQQQVKGLIQKKEELLSRLRRL 129

Query: 155 -----TTYEEKQIRKNPKEAWMSSLCDVNWLSETEALLQIASEETLKPHPFSQILLSLEE 214
                  Y EKQ R     +  +S   V+WL++ E +LQI+S   ++  P SQIL+ LEE
Sbjct: 130 QQQGDPIYNEKQSRSAALSSLSASAFAVSWLNDREVVLQISS-YVVQKSPLSQILVDLEE 189

Query: 215 DGLLLLSASSFQSFDGRLFFTLLLQV 235
           DGLLLL+ASSF+SF+GRLF +L +QV
Sbjct: 190 DGLLLLNASSFESFEGRLFCSLHIQV 201

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BLAST of Cla001653 vs. TrEMBL
Match: D7TIN8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g05300 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.7e-35
Identity = 105/239 (43.93%), Postives = 147/239 (61.51%), Query Frame = 1


Query: 1   MLAIVPSSFTTQGEWLSQNALISNQWTAGGSGGISESFIQFSSPLSSQQVRLESCSPPSA 60
           MLA  P  F+T G W  ++ +   Q         SESF+    P S  Q  L   +P +A
Sbjct: 1   MLAFSPPLFSTFG-WPWEDPISHEQNYIYQETEASESFLHL--PSSEPQAELNYSTPSAA 60

Query: 61  GNGGRRGAEGMGDGNDLTAVAKKLKHNASERDRRRKINSLYYSLRCLLPPTNPMKRMSNP 120
            +G                + KKL HNASERDRR+KINSLY SLR LLP  +  K++S P
Sbjct: 61  VSGN-------------PTMVKKLNHNASERDRRKKINSLYSSLRSLLPAADQAKKLSIP 120

Query: 121 STISRALKYIPEVQQQVEGLRRRKQDLVTKINA---TTYEEKQIRKNPKEAWMSSLCDVN 180
           ST+SR LKYIPE+Q+QVE L ++K++L++KI+      ++EKQ RK    + +S++   N
Sbjct: 121 STVSRVLKYIPELQKQVERLIQKKEELLSKISRQGDIIHQEKQ-RKATLASSLSAV-SAN 180

Query: 181 WLSETEALLQIASEETLKPH--PFSQILLSLEEDGLLLLSASSFQSFDGRLFFTLLLQV 235
            LS+ E ++QI+   T K H  P S++LL+LEEDGLL+++ASSF+SF GR+F+ L LQV
Sbjct: 181 RLSDREIVVQIS---TFKVHESPLSEVLLNLEEDGLLVINASSFESFGGRVFYNLHLQV 218

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BLAST of Cla001653 vs. TrEMBL
Match: A5C6G0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031510 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 105/239 (43.93%), Postives = 146/239 (61.09%), Query Frame = 1


Query: 1   MLAIVPSSFTTQGEWLSQNALISNQWTAGGSGGISESFIQFSSPLSSQQVRLESCSPPSA 60
           MLA  P  F+T G W  ++     Q         SESF+    P S  Q  L   +P +A
Sbjct: 1   MLAFSPPLFSTFG-WPWEDPXSHEQNYIYQETEASESFLHL--PSSEPQAELNYSTPSAA 60

Query: 61  GNGGRRGAEGMGDGNDLTAVAKKLKHNASERDRRRKINSLYYSLRCLLPPTNPMKRMSNP 120
            +G                + KKL HNASERDRR+KINSLY SLR LLP  +  K++S P
Sbjct: 61  VSGN-------------PTMVKKLNHNASERDRRKKINSLYSSLRSLLPAADQAKKLSIP 120

Query: 121 STISRALKYIPEVQQQVEGLRRRKQDLVTKINA---TTYEEKQIRKNPKEAWMSSLCDVN 180
           ST+SR LKYIPE+Q+QVE L ++K++L++KI+      ++EKQ RK    + +S++   N
Sbjct: 121 STVSRVLKYIPELQKQVERLIQKKEELLSKISRQGDIIHQEKQ-RKATLASSLSAV-SAN 180

Query: 181 WLSETEALLQIASEETLKPH--PFSQILLSLEEDGLLLLSASSFQSFDGRLFFTLLLQV 235
            LS+ E ++QI+   T K H  P S++LL+LEEDGLL+++ASSF+SF GR+F+ L LQV
Sbjct: 181 RLSDREIVVQIS---TFKVHESPLSEVLLNLEEDGLLVINASSFESFGGRVFYNLHLQV 218

[Close]

BLAST of Cla001653 vs. TrEMBL
Match: D7TF07_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0047g00450 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34
Identity = 104/237 (43.88%), Postives = 142/237 (59.92%), Query Frame = 1


Query: 1   MLAIVPSSFTTQGEWLSQNALISNQWTAGGSGGISESFIQFSSPLSSQQVRLESCSPPSA 60
           MLA  P SF T G W  ++ +   Q    G    SESF+  SS  S  QV L +CS PSA
Sbjct: 1   MLAFSPPSFPTLG-WPLEDPISHAQNYIYGETETSESFLHLSS--SQPQVEL-NCSTPSA 60

Query: 61  GNGGRRGAEGMGDGNDLTAVAKKLKHNASERDRRRKINSLYYSLRCLLPPTNPMKRMSNP 120
              G               + KKL HNASERDRR+KINSLY S+R LLP  + +K++S P
Sbjct: 61  AVRGN------------PTMVKKLNHNASERDRRKKINSLYSSMRSLLPSADQVKKLSIP 120

Query: 121 STISRALKYIPEVQQQVEGLRRRKQDLVTKINA---TTYEEKQIRKNPKEAWMSSLCDVN 180
           ST+SR LKYIPE+Q+QVE L ++K++ ++KI+      + E Q  +N       S     
Sbjct: 121 STVSRVLKYIPELQRQVERLIQKKEEFLSKISREGDPIHLENQ--RNGTLGSSLSAVSAR 180

Query: 181 WLSETEALLQIASEETLKPHPFSQILLSLEEDGLLLLSASSFQSFDGRLFFTLLLQV 235
            LS+ E ++QI S   +  +P S++L +LEEDGLL+++ASSF+SF GR+F+ L LQV
Sbjct: 181 RLSDREIVVQI-STFNVHENPLSEVLSNLEEDGLLVINASSFESFGGRVFYNLHLQV 218

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BLAST of Cla001653 vs. NCBI nr
Match: gi|778697748|ref|XP_004144366.2| (PREDICTED: transcription factor bHLH101-like [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 2.9e-64
Identity = 144/200 (72.00%), Postives = 158/200 (79.00%), Query Frame = 1


Query: 36  ESFIQFSSPLSSQQVRLESCSPP-SAGNGGRRGAEGMGDGNDLTAVAKKLKHNASERDRR 95
           E F QFSS   SQQV+LESC  P SAG             +D+T +AKKLKHNA+ERDRR
Sbjct: 2   EPFFQFSSLQPSQQVKLESCPTPLSAGVVA----------DDITDMAKKLKHNANERDRR 61

Query: 96  RKINSLYYSLRCLLPPTNPMKRMSNPSTISRALKYIPEVQQQVEGLRRRKQDLVTKINAT 155
           RKINSLY SLRCLLPPT+ MKRMSNPSTIS+ALKYIPE+QQQVEGLRRRK+ LVTK+N  
Sbjct: 62  RKINSLYCSLRCLLPPTDSMKRMSNPSTISKALKYIPELQQQVEGLRRRKEGLVTKLNEE 121

Query: 156 TYEEKQIRKNPKEAWMSSLCDVNWLSETEALLQIASE-ETLKPHPFSQILLSLEEDGLLL 215
               KQIRKN KE WMSS C VNWLSETEALLQIA E +T    PFSQILLSLEEDGLLL
Sbjct: 122 NL--KQIRKNNKEPWMSSFCAVNWLSETEALLQIALEDQTHTQLPFSQILLSLEEDGLLL 181

Query: 216 LSASSFQSFDGRLFFTLLLQ 234
           L+ASSF+SF+GRLF TLLLQ
Sbjct: 182 LTASSFRSFNGRLFLTLLLQ 189

[Close]

BLAST of Cla001653 vs. NCBI nr
Match: gi|659111343|ref|XP_008455701.1| (PREDICTED: transcription factor bHLH101-like [Cucumis melo])

HSP 1 Score: 252.7 bits (644), Expect = 6.4e-64
Identity = 143/199 (71.86%), Postives = 159/199 (79.90%), Query Frame = 1


Query: 36  ESFIQFSSPLSSQQVRLESCSPPSAGNGGRRGAEGMGDGNDLTAVAKKLKHNASERDRRR 95
           E F QFSS   SQQV+LESC  P+  + G  G       +D+TA+ KKLKHNA+ERDRRR
Sbjct: 2   EPFYQFSSLQPSQQVKLESC--PTLLSAGVVG-------DDITAMDKKLKHNANERDRRR 61

Query: 96  KINSLYYSLRCLLPPTNPMKRMSNPSTISRALKYIPEVQQQVEGLRRRKQDLVTKINATT 155
           KINSLYYSLRCLLPPT+ MKRMSNPSTIS+ALKYIPE+QQQVEGLRRRK+ LVTK+N   
Sbjct: 62  KINSLYYSLRCLLPPTDSMKRMSNPSTISKALKYIPELQQQVEGLRRRKEGLVTKLNEEN 121

Query: 156 YEEKQIRKNPKEAWMSSLCDVNWLSETEALLQIASEE-TLKPHPFSQILLSLEEDGLLLL 215
              KQIRKN KE WMSSLC VNWLSETEALLQIA EE T    PFSQILLSLE+DGLLL 
Sbjct: 122 L--KQIRKNNKEPWMSSLCAVNWLSETEALLQIALEEQTHTQLPFSQILLSLEDDGLLLS 181

Query: 216 SASSFQSFDGRLFFTLLLQ 234
           +ASSF+S +G LFFTLLLQ
Sbjct: 182 TASSFRSSNGSLFFTLLLQ 189

[Close]

BLAST of Cla001653 vs. NCBI nr
Match: gi|700199567|gb|KGN54725.1| (hypothetical protein Csa_4G434980 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 94/120 (78.33%), Postives = 102/120 (85.00%), Query Frame = 1


Query: 115 KRMSNPSTISRALKYIPEVQQQVEGLRRRKQDLVTKINATTYEEKQIRKNPKEAWMSSLC 174
           KRMSNPSTIS+ALKYIPE+QQQVEGLRRRK+ LVTK+N      KQIRKN KE WMSS C
Sbjct: 6   KRMSNPSTISKALKYIPELQQQVEGLRRRKEGLVTKLNEENL--KQIRKNNKEPWMSSFC 65

Query: 175 DVNWLSETEALLQIASE-ETLKPHPFSQILLSLEEDGLLLLSASSFQSFDGRLFFTLLLQ 234
            VNWLSETEALLQIA E +T    PFSQILLSLEEDGLLLL+ASSF+SF+GRLF TLLLQ
Sbjct: 66  AVNWLSETEALLQIALEDQTHTQLPFSQILLSLEEDGLLLLTASSFRSFNGRLFLTLLLQ 123

[Close]

BLAST of Cla001653 vs. NCBI nr
Match: gi|595811539|ref|XP_007203256.1| (hypothetical protein PRUPE_ppa019552mg, partial [Prunus persica])

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 100/206 (48.54%), Postives = 138/206 (66.99%), Query Frame = 1


Query: 35  SESFIQFSSPLSSQQVRLESCSPPSAGNGGRRGAEGMGDGNDLTAVAKKLKHNASERDRR 94
           +ESF+   SP   Q+V     +P S  +GGR          DLT V KKL HNASERD R
Sbjct: 10  AESFLHCVSP--HQRVDQFEFTPSSPMSGGR----------DLTVV-KKLNHNASERDDR 69

Query: 95  RKINSLYYSLRCLLPPTNPMKRMSNPSTISRALKYIPEVQQQVEGLRRRKQDLVTKINA- 154
           +KIN+LY +LR LLP +  MK++SNP+ ISRA+KYIPE+QQQV+GL ++K++L++++   
Sbjct: 70  KKINTLYSTLRSLLPASYQMKKLSNPAAISRAVKYIPELQQQVKGLIQKKEELLSRLRRL 129

Query: 155 -----TTYEEKQIRKNPKEAWMSSLCDVNWLSETEALLQIASEETLKPHPFSQILLSLEE 214
                  Y EKQ R     +  +S   V+WL++ E +LQI+S   ++  P SQIL+ LEE
Sbjct: 130 QQQGDPIYNEKQSRSAALSSLSASAFAVSWLNDREVVLQISS-YVVQKSPLSQILVDLEE 189

Query: 215 DGLLLLSASSFQSFDGRLFFTLLLQV 235
           DGLLLL+ASSF+SF+GRLF +L +QV
Sbjct: 190 DGLLLLNASSFESFEGRLFCSLHIQV 201

[Close]

BLAST of Cla001653 vs. NCBI nr
Match: gi|731400480|ref|XP_010653965.1| (PREDICTED: transcription factor ORG2 [Vitis vinifera])

HSP 1 Score: 156.0 bits (393), Expect = 8.1e-35
Identity = 105/239 (43.93%), Postives = 147/239 (61.51%), Query Frame = 1


Query: 1   MLAIVPSSFTTQGEWLSQNALISNQWTAGGSGGISESFIQFSSPLSSQQVRLESCSPPSA 60
           MLA  P  F+T G W  ++ +   Q         SESF+    P S  Q  L   +P +A
Sbjct: 1   MLAFSPPLFSTFG-WPWEDPISHEQNYIYQETEASESFLHL--PSSEPQAELNYSTPSAA 60

Query: 61  GNGGRRGAEGMGDGNDLTAVAKKLKHNASERDRRRKINSLYYSLRCLLPPTNPMKRMSNP 120
            +G                + KKL HNASERDRR+KINSLY SLR LLP  +  K++S P
Sbjct: 61  VSGN-------------PTMVKKLNHNASERDRRKKINSLYSSLRSLLPAADQAKKLSIP 120

Query: 121 STISRALKYIPEVQQQVEGLRRRKQDLVTKINA---TTYEEKQIRKNPKEAWMSSLCDVN 180
           ST+SR LKYIPE+Q+QVE L ++K++L++KI+      ++EKQ RK    + +S++   N
Sbjct: 121 STVSRVLKYIPELQKQVERLIQKKEELLSKISRQGDIIHQEKQ-RKATLASSLSAV-SAN 180

Query: 181 WLSETEALLQIASEETLKPH--PFSQILLSLEEDGLLLLSASSFQSFDGRLFFTLLLQV 235
            LS+ E ++QI+   T K H  P S++LL+LEEDGLL+++ASSF+SF GR+F+ L LQV
Sbjct: 181 RLSDREIVVQIS---TFKVHESPLSEVLLNLEEDGLLVINASSFESFGGRVFYNLHLQV 218

The following BLAST results are available for this feature:

BLAST of Cla001653 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BH101_ARATH	5.1e-29	38.81	Transcription factor bHLH101 OS=Arabidopsis thaliana GN=BHLH101 PE=2 SV=1	[more]
ORG2_ARATH	1.9e-28	37.13	Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1	[more]
BH100_ARATH	3.3e-28	43.83	Transcription factor bHLH100 OS=Arabidopsis thaliana GN=BHLH100 PE=2 SV=1	[more]
ORG3_ARATH	9.6e-28	44.25	Transcription factor ORG3 OS=Arabidopsis thaliana GN=ORG3 PE=1 SV=1	[more]
BH126_ARATH	3.5e-06	24.16	Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126 PE=2 SV=1	[more]

BLAST of Cla001653 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYH3_CUCSA	1.0e-39	78.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G434980 PE=4 SV=1	[more]
M5WCF6_PRUPE	1.2e-37	48.54	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019552mg PE=4 S...	[more]
D7TIN8_VITVI	5.7e-35	43.93	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g05300 PE=4 SV=...	[more]
A5C6G0_VITVI	1.3e-34	43.93	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031510 PE=4 SV=1	[more]
D7TF07_VITVI	2.1e-34	43.88	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0047g00450 PE=4 SV=...	[more]

BLAST of Cla001653 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697748\|ref\|XP_004144366.2\|	2.9e-64	72.00	PREDICTED: transcription factor bHLH101-like [Cucumis sativus]	[more]
gi\|659111343\|ref\|XP_008455701.1\|	6.4e-64	71.86	PREDICTED: transcription factor bHLH101-like [Cucumis melo]	[more]
gi\|700199567\|gb\|KGN54725.1\|	1.4e-39	78.33	hypothetical protein Csa_4G434980 [Cucumis sativus]	[more]
gi\|595811539\|ref\|XP_007203256.1\|	1.7e-37	48.54	hypothetical protein PRUPE_ppa019552mg, partial [Prunus persica]	[more]
gi\|731400480\|ref\|XP_010653965.1\|	8.1e-35	43.93	PREDICTED: transcription factor ORG2 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom
IPR015660	MASH1/Ascl1a-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001653	Cla001653.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 82..153 score: 5.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 82..134 score: 5.0
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 87..139 score: 1.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 81..133 score: 13
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 82..154 score: 8.51
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 80..234 score: 1.2
None	No IPR available	unknown	Coil	Coil	coord: 130..150 scor
None	No IPR available	PANTHER	PTHR13935:SF41	ACHAETE-SCUTE HOMOLOG 3	coord: 80..234 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001653	Csa4G434980	Cucumber (Chinese Long) v2	cuwmB336
Cla001653	CSPI04G19350	Wild cucumber (PI 183967)	cpiwmB341

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001653	Cucumber (Gy14) v1	cgywmB325
Cla001653	Cucurbita maxima (Rimu)	cmawmB834
Cla001653	Cucurbita moschata (Rifu)	cmowmB822
Cla001653	Watermelon (Charleston Gray)	wcgwmB257
Cla001653	Cucurbita pepo (Zucchini)	cpewmB497
Cla001653	Bottle gourd (USVL1VR-Ls)	lsiwmB149
Cla001653	Silver-seed gourd	carwmB0471
Cla001653	Watermelon (97103) v2	wmwmbB293