Cla001644 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001644
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	E3 ubiquitin-protein ligase arih1 (AHRD V1 ***- ARI1_XENLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
Location	Chr11 : 5736164 .. 5737839 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTATCCACTGTTCTTTCGATTTCAAAAGTAGCCGCTAGCATCTTGCTTCGATATTACAACTGGTATAAGTTTATGACCTGTATGTCAAGTACTTGAATACAGATGATTGAAATAATGTACCCTATTAATGTGAAGCACATGTCTTAACGTTTCTTATTACATAACATTGTAGATTTAGTTATTACACCACAATATTGTTCTTGAGGACCTTACATAATATGTAGTGCACCTGCGTTCACTTTATGTTTTCTCCACTTTATAAATATTGTATGCCCAATTTCATGTTCTAAATTTTGGGGATTCTACAACAATCTTGCTTTGCAGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGACGAAGAAAAGGTCCGTACATCTGTTGGCTTACTAGAAAAACCAGTTTTGCCACATTCAAATGAACTAGAAGTAAGCAATCTCTCTCTCCTCTTTTATTTTTTATTTTTTTTATTAGTTCTATTGAACTTCTATTAATCATTTTTGCATTACCAATTGCTTGGTAAAATTGAGAATGTATACAGTATTATGATATACCTTATTTTTTGGCAGCTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATCCAGTCTGCTGCTTGTGGCCATCCATTTTGCAATGCGTGTTGGACAGGTTTGCCAACTCATAACAAGCCATTTTGTTAACCGTTCTGTTAAAAAGATGAAGCAGATTCCCACAAACACACACACACACACACAACAAGCTACACAAAATGAGCCTTTGAATCTATAATAATCACGGACAGGTTGTAATTACAAAAGAATTTCCTGTGTAAAACTACCCACTAACCACTAAGAGGTGATTTGTACAAGATGACAAAATGAATCGAACTGTAATGACTTGGGAGCTTGATCTTCTCCTTGATTAAAAAGAATAAGTTGAAAGAAGGCTATAGAATAAGGTATTTATGAACTATGATATTTTGCCGTATAAATGATCATTCAAGGTGAAAGAAGTGCAAAATAGTACTTCACCTTTCATGGGAATTAGGAAGGAATACCTCCATCATTCATAGAAGCAAAAGAACAAGACTAAAAATGTGATTGATCATTACTCAGGCAAGTGAAGTTAGTTGGAGGAGGATGGGAAGATTTTTTCATGATAAGTGATGAATACAAGAAAAGTGTGTAACAAAAGTTTGAATGAATTTTTGGAGATATCAAAATCAAGAAGTGTGAGCTTTTGGCTTAGATTTTCGAGTTTGATGAATTTCAAGGCGAATATGTCGACTTATAGAAGGAGCTGTTTCTTGGATGTTGTTGTGAATGAATCTCTTTTGGCGAGTTTTTGCCGAGAATTAGTTTGGCCATGACATTGGGCTCATTCCTCCACTATCATCTTCAGCTGTGGTCTTGGCAGAAGGCTCTTAAATTGTTGGGATTAGTGATAGAAGTTCTATGGATTCCTCCCAATTTGTGTTCATGCATTTTCTTGTTCATTTTTAAGTTCAAATAGTTGAGCTTGTAGGCACTAATGATGCTATGATTACTGGTCATAGGGTGGTTAAAGCTTCAGGCTTCAAAATTAAAGCTATATCACTTGAGTCAGAACTCTTTATTTGCATCTATGCTTGCAGTTAATGGTGGTCCAATAGTTGGGGCACATGTTGAATTCTACTAG

mRNA sequence

ATGAGAGTATCCACTGTTCTTTCGATTTCAAAAGTAGCCGCTAGCATCTTGCTTCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGACGAAGAAAAGGTCCGTACATCTGTTGGCTTACTAGAAAAACCAGTTTTGCCACATTCAAATGAACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATCCAGTCTGCTGCTTGTGGCCATCCATTTTGCAATGCGTGTTGGACAGGGTGGTTAAAGCTTCAGGCTTCAAAATTAAAGCTATATCACTTGAGTCAGAACTCTTTATTTGCATCTATGCTTGCAGTTAATGGTGGTCCAATAGTTGGGGCACATGTTGAATTCTACTAG

Coding sequence (CDS)

ATGAGAGTATCCACTGTTCTTTCGATTTCAAAAGTAGCCGCTAGCATCTTGCTTCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGACGAAGAAAAGGTCCGTACATCTGTTGGCTTACTAGAAAAACCAGTTTTGCCACATTCAAATGAACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATCCAGTCTGCTGCTTGTGGCCATCCATTTTGCAATGCGTGTTGGACAGGGTGGTTAAAGCTTCAGGCTTCAAAATTAAAGCTATATCACTTGAGTCAGAACTCTTTATTTGCATCTATGCTTGCAGTTAATGGTGGTCCAATAGTTGGGGCACATGTTGAATTCTACTAG

Protein sequence

MRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELPCGICFEIYSRDKIQSAACGHPFCNACWTGWLKLQASKLKLYHLSQNSLFASMLAVNGGPIVGAHVEFY

Homology

[Close]

BLAST of Cla001644 vs. Swiss-Prot
Match: ARI8_ARATH (Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana GN=ARI8 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-31
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 1


Query: 2   RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELPC 61
           R+STVLSIS+ +++ILLR+YNW VS+VHDEWFADEEKVR +VGLLEKPV+    + EL C
Sbjct: 69  RISTVLSISRNSSAILLRHYNWCVSRVHDEWFADEEKVRDAVGLLEKPVVDFPTDGELDC 128

Query: 62  GICFEIYSRDKIQSAACGHPFCNACWTGWL 92
           GICFE +  DK+ +AACGHPFC++CW G++
Sbjct: 129 GICFETFLSDKLHAAACGHPFCDSCWEGYI 158

[Close]

BLAST of Cla001644 vs. Swiss-Prot
Match: ARI7_ARATH (Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.3e-30
Identity = 57/90 (63.33%), Postives = 72/90 (80.00%), Query Frame = 1


Query: 2   RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELPC 61
           RVS VLSI++V ASILLR+++WSV +VHDEWFADEE+VR +VG+LE  V+P S++ EL C
Sbjct: 78  RVSVVLSITEVEASILLRHFHWSVGRVHDEWFADEERVRKTVGILESHVVPPSDDSELTC 137

Query: 62  GICFEIYSRDKIQSAACGHPFCNACWTGWL 92
           GICF+ Y  +KI S +CGHPFC  CWTG++
Sbjct: 138 GICFDSYPPEKIASVSCGHPFCTTCWTGYI 167

[Close]

BLAST of Cla001644 vs. Swiss-Prot
Match: ARI5_ARATH (Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana GN=ARI5 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.6e-27
Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 1


Query: 2   RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELPC 61
           RVS VLSI+ V AS LL +Y+WSVSKV+DEWFADEE+VR +VG+LE PV+   +  E  C
Sbjct: 73  RVSAVLSITDVEASTLLLHYHWSVSKVNDEWFADEERVRRTVGILEGPVVTTPDGREFTC 132

Query: 62  GICFEIYSRDKIQSAACGHPFCNACWTGWL 92
           GICF+ Y+ ++I S +CGHPFC  CWTG++
Sbjct: 133 GICFDSYTLEEIVSVSCGHPFCATCWTGYI 162

[Close]

BLAST of Cla001644 vs. Swiss-Prot
Match: ARI10_ARATH (Probable E3 ubiquitin-protein ligase ARI10 OS=Arabidopsis thaliana GN=ARI10 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.4e-26
Identity = 48/91 (52.75%), Postives = 70/91 (76.92%), Query Frame = 1


Query: 2   RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLP-HSNELELP 61
           RVST+L +S+V A +LL +Y+W VSK+ DEWF DEE++R +VG+L++PV+  +  E+++ 
Sbjct: 61  RVSTILFLSQVEAIVLLLHYHWCVSKLEDEWFTDEERIRKTVGILKEPVVDVNGTEVDIQ 120

Query: 62  CGICFEIYSRDKIQSAACGHPFCNACWTGWL 92
           CGICFE Y+R +I S +CGHP+C  CWTG++
Sbjct: 121 CGICFESYTRKEIASVSCGHPYCKTCWTGYI 151

[Close]

BLAST of Cla001644 vs. Swiss-Prot
Match: ARI11_ARATH (Probable E3 ubiquitin-protein ligase ARI11 OS=Arabidopsis thaliana GN=ARI11 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-25
Identity = 47/91 (51.65%), Postives = 70/91 (76.92%), Query Frame = 1


Query: 2   RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLP-HSNELELP 61
           +VSTVLS+S+V + +LL +Y+W VSK+ DEWF DEE++R +VG+L++PV+  +  E+++ 
Sbjct: 79  QVSTVLSVSQVESIVLLLHYHWCVSKLEDEWFTDEERIRKTVGILKEPVVDVNGTEVDIQ 138

Query: 62  CGICFEIYSRDKIQSAACGHPFCNACWTGWL 92
           CGICFE Y+R +I   +CGHP+C  CWTG++
Sbjct: 139 CGICFESYTRKEIARVSCGHPYCKTCWTGYI 169

[Close]

BLAST of Cla001644 vs. TrEMBL
Match: A0A0A0LHB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G091790 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 5.8e-42
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 2   RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELPC 61
           RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVR SVGLL+KPVL HSNELELPC
Sbjct: 46  RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLQKPVLRHSNELELPC 105

Query: 62  GICFEIYSRDKIQSAACGHPFCNACWTGWL 92
           GICFEIY  DKIQSAACGHPFCNACWTG++
Sbjct: 106 GICFEIYPLDKIQSAACGHPFCNACWTGYI 135

[Close]

BLAST of Cla001644 vs. TrEMBL
Match: A0A061EZ86_THECC (IBR domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_025075 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-34
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 1


Query: 1   MRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELP 60
           MRVSTVLSISKV A ILLRYYNWSVSKVHDEWFADEEKVR SVGLLEKPV+P  +  E+ 
Sbjct: 84  MRVSTVLSISKVEAGILLRYYNWSVSKVHDEWFADEEKVRRSVGLLEKPVVPFPDGREMT 143

Query: 61  CGICFEIYSRDKIQSAACGHPFCNACWTGWL 92
           CGICFE Y  D++ +AACGHPFCN+CW G++
Sbjct: 144 CGICFETYPYDRLHTAACGHPFCNSCWAGYI 174

[Close]

BLAST of Cla001644 vs. TrEMBL
Match: A0A061EYH9_THECC (IBR domain-containing protein isoform 2 OS=Theobroma cacao GN=TCM_025075 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-34
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 1


Query: 1   MRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELP 60
           MRVSTVLSISKV A ILLRYYNWSVSKVHDEWFADEEKVR SVGLLEKPV+P  +  E+ 
Sbjct: 84  MRVSTVLSISKVEAGILLRYYNWSVSKVHDEWFADEEKVRRSVGLLEKPVVPFPDGREMT 143

Query: 61  CGICFEIYSRDKIQSAACGHPFCNACWTGWL 92
           CGICFE Y  D++ +AACGHPFCN+CW G++
Sbjct: 144 CGICFETYPYDRLHTAACGHPFCNSCWAGYI 174

[Close]

BLAST of Cla001644 vs. TrEMBL
Match: B9HYH6_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0010s18800g PE=4 SV=2)

HSP 1 Score: 152.9 bits (385), Expect = 2.6e-34
Identity = 67/91 (73.63%), Postives = 80/91 (87.91%), Query Frame = 1


Query: 1   MRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELP 60
           MR++TVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVR +VGLLE+PV+P  +  E+ 
Sbjct: 79  MRIATVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRKAVGLLEEPVVPFPDGREMT 138

Query: 61  CGICFEIYSRDKIQSAACGHPFCNACWTGWL 92
           CGICFE Y  D++ +AACGHPFCN+CW G++
Sbjct: 139 CGICFETYPSDRLLAAACGHPFCNSCWAGYI 169

[Close]

BLAST of Cla001644 vs. TrEMBL
Match: W9RV82_9ROSA (Putative E3 ubiquitin-protein ligase ARI8 OS=Morus notabilis GN=L484_003557 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.6e-34
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 1


Query: 1   MRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELP 60
           MR+STVLSISKVAASILLRYYNWSVSKVHDEWFADEEKV  +VG LEKPV+ + N  EL 
Sbjct: 85  MRISTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVCKAVGFLEKPVVEYPNATELT 144

Query: 61  CGICFEIYSRDKIQSAACGHPFCNACWTGWL 92
           CGICFE Y RDKI +A CGHPFC+ CW G++
Sbjct: 145 CGICFEAYPRDKIHTAVCGHPFCDTCWGGYI 175

[Close]

BLAST of Cla001644 vs. NCBI nr
Match: gi|449442245|ref|XP_004138892.1| (PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 8.4e-42
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 2   RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELPC 61
           RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVR SVGLL+KPVL HSNELELPC
Sbjct: 87  RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLQKPVLRHSNELELPC 146

Query: 62  GICFEIYSRDKIQSAACGHPFCNACWTGWL 92
           GICFEIY  DKIQSAACGHPFCNACWTG++
Sbjct: 147 GICFEIYPLDKIQSAACGHPFCNACWTGYI 176

[Close]

BLAST of Cla001644 vs. NCBI nr
Match: gi|778668058|ref|XP_011649031.1| (PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 8.4e-42
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 2   RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELPC 61
           RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVR SVGLL+KPVL HSNELELPC
Sbjct: 87  RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLQKPVLRHSNELELPC 146

Query: 62  GICFEIYSRDKIQSAACGHPFCNACWTGWL 92
           GICFEIY  DKIQSAACGHPFCNACWTG++
Sbjct: 147 GICFEIYPLDKIQSAACGHPFCNACWTGYI 176

[Close]

BLAST of Cla001644 vs. NCBI nr
Match: gi|700206216|gb|KGN61335.1| (hypothetical protein Csa_2G091790 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 8.4e-42
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 2   RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELPC 61
           RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVR SVGLL+KPVL HSNELELPC
Sbjct: 46  RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLQKPVLRHSNELELPC 105

Query: 62  GICFEIYSRDKIQSAACGHPFCNACWTGWL 92
           GICFEIY  DKIQSAACGHPFCNACWTG++
Sbjct: 106 GICFEIYPLDKIQSAACGHPFCNACWTGYI 135

[Close]

BLAST of Cla001644 vs. NCBI nr
Match: gi|659082300|ref|XP_008441769.1| (PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 8.4e-42
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 2   RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELPC 61
           RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVR SVGLL+KPVL HSNELELPC
Sbjct: 87  RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLQKPVLRHSNELELPC 146

Query: 62  GICFEIYSRDKIQSAACGHPFCNACWTGWL 92
           GICFEIY  DKIQSAACGHPFCNACWTG++
Sbjct: 147 GICFEIYPLDKIQSAACGHPFCNACWTGYI 176

[Close]

BLAST of Cla001644 vs. NCBI nr
Match: gi|659082302|ref|XP_008441770.1| (PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 8.4e-42
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 2   RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRTSVGLLEKPVLPHSNELELPC 61
           RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVR SVGLL+KPVL HSNELELPC
Sbjct: 87  RVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLQKPVLRHSNELELPC 146

Query: 62  GICFEIYSRDKIQSAACGHPFCNACWTGWL 92
           GICFEIY  DKIQSAACGHPFCNACWTG++
Sbjct: 147 GICFEIYPLDKIQSAACGHPFCNACWTGYI 176

The following BLAST results are available for this feature:

BLAST of Cla001644 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARI8_ARATH	1.3e-31	65.56	Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana GN=ARI8 PE=2 S...	[more]
ARI7_ARATH	3.3e-30	63.33	Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 S...	[more]
ARI5_ARATH	7.6e-27	60.00	Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana GN=ARI5 PE=2 S...	[more]
ARI10_ARATH	8.4e-26	52.75	Probable E3 ubiquitin-protein ligase ARI10 OS=Arabidopsis thaliana GN=ARI10 PE=2...	[more]
ARI11_ARATH	2.4e-25	51.65	Probable E3 ubiquitin-protein ligase ARI11 OS=Arabidopsis thaliana GN=ARI11 PE=2...	[more]

BLAST of Cla001644 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHB9_CUCSA	5.8e-42	92.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G091790 PE=4 SV=1	[more]
A0A061EZ86_THECC	1.2e-34	75.82	IBR domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_025075 PE=4 SV...	[more]
A0A061EYH9_THECC	1.2e-34	75.82	IBR domain-containing protein isoform 2 OS=Theobroma cacao GN=TCM_025075 PE=4 SV...	[more]
B9HYH6_POPTR	2.6e-34	73.63	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0010s18800g PE=4 SV=2	[more]
W9RV82_9ROSA	2.6e-34	75.82	Putative E3 ubiquitin-protein ligase ARI8 OS=Morus notabilis GN=L484_003557 PE=4...	[more]

BLAST of Cla001644 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442245\|ref\|XP_004138892.1\|	8.4e-42	92.22	PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Cucumis sativus...	[more]
gi\|778668058\|ref\|XP_011649031.1\|	8.4e-42	92.22	PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Cucumis sativus...	[more]
gi\|700206216\|gb\|KGN61335.1\|	8.4e-42	92.22	hypothetical protein Csa_2G091790 [Cucumis sativus]	[more]
gi\|659082300\|ref\|XP_008441769.1\|	8.4e-42	92.22	PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Cucumis melo]	[more]
gi\|659082302\|ref\|XP_008441770.1\|	8.4e-42	92.22	PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR018957	Znf_C3HC4_RING-type

Vocabulary: **Molecular Function**
Term	Definition
GO:0004842	ubiquitin-protein transferase activity
GO:0046872	metal ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0016567	protein ubiquitination

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU15214	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001644	Cla001644.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU15214	WMU15214	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 53..93 score: 4.
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 61..92 score: 3.
None	No IPR available	PANTHER	PTHR11685:SF135	E3 UBIQUITIN-PROTEIN LIGASE ARI10-RELATED	coord: 2..92 score: 2.6
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 60..96 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001644	Cla97C11G214730	Watermelon (97103) v2	wmwmbB363
Cla001644	ClCG11G009070	Watermelon (Charleston Gray)	wcgwmB104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001644	Cucumber (Chinese Long) v3	cucwmB169
Cla001644	Cucumber (Chinese Long) v3	cucwmB177
Cla001644	Wild cucumber (PI 183967)	cpiwmB160
Cla001644	Wild cucumber (PI 183967)	cpiwmB168
Cla001644	Cucumber (Chinese Long) v2	cuwmB158
Cla001644	Bottle gourd (USVL1VR-Ls)	lsiwmB113
Cla001644	Bottle gourd (USVL1VR-Ls)	lsiwmB119
Cla001644	Cucumber (Gy14) v2	cgybwmB150