Cla001639 (gene) Watermelon (97103) v1

Overview
NameCla001639
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGag/pol protein (Fragment) (AHRD V1 ***- E2GK51_BRYDI)
LocationChr11 : 5631909 .. 5632232 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCCTCAATCATCGCACTAGTTAAAAATGAAAAACTAACCGGTGAAAACTACGCAACGTTAAAATCTAACCTGAATGTGATTCTAGTTATAGATGATCTACAGTTTGTCTTAACGGAGAAGTGTCCTCCTATCCCTGTTTATAATGCATCCCAATTTGTTAGGGATGCATATGATTGTTGGACAAAGGCCAATGACAAAACCCGAGTCTATATCTTGGCGAGTTTGTCTGACGTACTCAACAAGAAACATGAGGCCATGATGAATGCACGACAGATCATGGAGTCCCTCCAGGAAATGTTTGGACAACCGTTCTCATAG

mRNA sequence

ATGTCTTCCTCAATCATCGCACTAGTTAAAAATGAAAAACTAACCGGTGAAAACTACGCAACGTTAAAATCTAACCTGAATGTGATTCTAGTTATAGATGATCTACAGTTTGTCTTAACGGAGAAGTGTCCTCCTATCCCTGTTTATAATGCATCCCAATTTGTTAGGGATGCATATGATTGTTGGACAAAGGCCAATGACAAAACCCGAGTCTATATCTTGGCGAGTTTGTCTGACGTACTCAACAAGAAACATGAGGCCATGATGAATGCACGACAGATCATGGAGTCCCTCCAGGAAATGTTTGGACAACCGTTCTCATAG

Coding sequence (CDS)

ATGTCTTCCTCAATCATCGCACTAGTTAAAAATGAAAAACTAACCGGTGAAAACTACGCAACGTTAAAATCTAACCTGAATGTGATTCTAGTTATAGATGATCTACAGTTTGTCTTAACGGAGAAGTGTCCTCCTATCCCTGTTTATAATGCATCCCAATTTGTTAGGGATGCATATGATTGTTGGACAAAGGCCAATGACAAAACCCGAGTCTATATCTTGGCGAGTTTGTCTGACGTACTCAACAAGAAACATGAGGCCATGATGAATGCACGACAGATCATGGAGTCCCTCCAGGAAATGTTTGGACAACCGTTCTCATAG

Protein sequence

MSSSIIALVKNEKLTGENYATLKSNLNVILVIDDLQFVLTEKCPPIPVYNASQFVRDAYDCWTKANDKTRVYILASLSDVLNKKHEAMMNARQIMESLQEMFGQPFS
Homology
[Close]
BLAST of Cla001639 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.0e-31
Identity = 66/105 (62.86%), Postives = 87/105 (82.86%), Query Frame = 1 

Query: 1   MSSSIIALVKNEKLTGENYATLKSNLNVILVIDDLQFVLTEKCPPIPVYNASQFVRDAYD 60
           M++SI+ L+ +EKL G+NY+  KSNLN ILV+DDL+FVLTE+CP  P  NA++ VR+AYD
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  CWTKANDKTRVYILASLSDVLNKKHEAMMNARQIMESLQEMFGQP 106
            W KANDK RVYILAS++DVL KKH+++  A+ IM+SL+EMFGQP
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQP 105

[Close]
BLAST of Cla001639 vs. TrEMBL
Match: E2GK52_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.4e-26
Identity = 58/105 (55.24%), Postives = 82/105 (78.10%), Query Frame = 1 

Query: 1   MSSSIIALVKNEKLTGENYATLKSNLNVILVIDDLQFVLTEKCPPIPVYNASQFVRDAYD 60
           M++SI+ L+ +EKL  +NY+  KSNLN ILV++DL+F+LTE+C   P  NA++ VR+AYD
Sbjct: 1   MNTSIVQLLASEKLNSDNYSAWKSNLNTILVVEDLRFILTEECHQAPALNANRTVREAYD 60

Query: 61  CWTKANDKTRVYILASLSDVLNKKHEAMMNARQIMESLQEMFGQP 106
            W KANDK  VYILAS++DVL KK++++   + IM+S +EMFGQP
Sbjct: 61  RWGKANDKACVYILASMTDVLAKKYDSIATTKGIMDSFREMFGQP 105

[Close]
BLAST of Cla001639 vs. TrEMBL
Match: W9SH28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.1e-25
Identity = 57/105 (54.29%), Postives = 78/105 (74.29%), Query Frame = 1 

Query: 1   MSSSIIALVKNEKLTGENYATLKSNLNVILVIDDLQFVLTEKCPPIPVYNASQFVRDAYD 60
           MS+ II L+  EKL G+NYA  KSN+N++L+ +D +FVL ++CPP P  NA++  R+ YD
Sbjct: 1   MSNLIIILLVTEKLDGDNYAKWKSNMNILLICEDYKFVLVDECPPEPAANATKTAREPYD 60

Query: 61  CWTKANDKTRVYILASLSDVLNKKHEAMMNARQIMESLQEMFGQP 106
            W KAN+K + ++LAS+SDVL KKHE M  A +IMESL+ MFG P
Sbjct: 61  RWIKANNKAKCFMLASMSDVLCKKHEEMETAYEIMESLEAMFGAP 105

[Close]
BLAST of Cla001639 vs. TrEMBL
Match: W9RVT2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006473 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-24
Identity = 57/105 (54.29%), Postives = 77/105 (73.33%), Query Frame = 1 

Query: 1   MSSSIIALVKNEKLTGENYATLKSNLNVILVIDDLQFVLTEKCPPIPVYNASQFVRDAYD 60
           MS+ II L+  EK  G+NYA  KSN+N++LV +D +FVL E+CP  P  NAS+  R+ YD
Sbjct: 1   MSNPIITLLATEKPDGDNYAKWKSNMNILLVCEDYKFVLVEECPQEPAVNASKTAREPYD 60

Query: 61  CWTKANDKTRVYILASLSDVLNKKHEAMMNARQIMESLQEMFGQP 106
            W KAN+K + ++LAS+SDVL+KKHE M  A +IMESL+ +FG P
Sbjct: 61  RWIKANNKAKCFMLASMSDVLHKKHEEMETAYEIMESLEAIFGAP 105

[Close]
BLAST of Cla001639 vs. TrEMBL
Match: W9RMF3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014901 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 56/105 (53.33%), Postives = 78/105 (74.29%), Query Frame = 1 

Query: 1   MSSSIIALVKNEKLTGENYATLKSNLNVILVIDDLQFVLTEKCPPIPVYNASQFVRDAYD 60
           MS+ II L+  EKL  +NYA  K+N+N++LV +D +FVL E+CPP P  NAS+  R++YD
Sbjct: 1   MSNPIITLLATEKLDSDNYAKRKNNMNILLVYEDYKFVLVEECPPEPAANASKIGRESYD 60

Query: 61  CWTKANDKTRVYILASLSDVLNKKHEAMMNARQIMESLQEMFGQP 106
            W KAN+K + ++LAS+SDVL KKH+ +  A +IMESL+ MFG P
Sbjct: 61  RWIKANNKAKCFMLASMSDVLRKKHKEIETAYEIMESLKVMFGAP 105

[Close]
BLAST of Cla001639 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 141.7 bits (356), Expect = 7.2e-31
Identity = 66/105 (62.86%), Postives = 87/105 (82.86%), Query Frame = 1 

Query: 1   MSSSIIALVKNEKLTGENYATLKSNLNVILVIDDLQFVLTEKCPPIPVYNASQFVRDAYD 60
           M++SI+ L+ +EKL G+NY+  KSNLN ILV+DDL+FVLTE+CP  P  NA++ VR+AYD
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  CWTKANDKTRVYILASLSDVLNKKHEAMMNARQIMESLQEMFGQP 106
            W KANDK RVYILAS++DVL KKH+++  A+ IM+SL+EMFGQP
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQP 105

[Close]
BLAST of Cla001639 vs. NCBI nr
Match: gi|659086056|ref|XP_008443743.1| (PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 3.6e-30
Identity = 69/105 (65.71%), Postives = 83/105 (79.05%), Query Frame = 1 

Query: 1   MSSSIIALVKNEKLTGENYATLKSNLNVILVIDDLQFVLTEKCPPIPVYNASQFVRDAYD 60
           M+SSI+ L+  EKL G+NYA  KSNLN ILV+DDL+FVLTE+CP  P  NASQ  R AYD
Sbjct: 1   MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPQTPSSNASQTSRKAYD 60

Query: 61  CWTKANDKTRVYILASLSDVLNKKHEAMMNARQIMESLQEMFGQP 106
            W KAN+K RVYILAS+SDVL KKHE++  A++IM SL+ MFGQP
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMNSLKGMFGQP 105

[Close]
BLAST of Cla001639 vs. NCBI nr
Match: gi|778697615|ref|XP_011654359.1| (PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 3.0e-29
Identity = 65/105 (61.90%), Postives = 85/105 (80.95%), Query Frame = 1 

Query: 1   MSSSIIALVKNEKLTGENYATLKSNLNVILVIDDLQFVLTEKCPPIPVYNASQFVRDAYD 60
           M+SSI+ L+ +EK+  +NYA  KSNLN ILV+DDL+FVLTE+CP  P  NA++  R+AYD
Sbjct: 1   MNSSIVQLLASEKINDDNYAAWKSNLNTILVVDDLRFVLTEECPQNPASNANRTGREAYD 60

Query: 61  CWTKANDKTRVYILASLSDVLNKKHEAMMNARQIMESLQEMFGQP 106
            W KAN+K RVYILAS+SDVL KKHE++  A++IM+SL+ MFGQP
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLRGMFGQP 105

[Close]
BLAST of Cla001639 vs. NCBI nr
Match: gi|659072276|ref|XP_008464721.1| (PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 5.4e-26
Identity = 58/102 (56.86%), Postives = 79/102 (77.45%), Query Frame = 1 

Query: 3   SSIIALVKNEKLTGENYATLKSNLNVILVIDDLQFVLTEKCPPIPVYNASQFVRDAYDCW 62
           S+ + ++  +KL G NYA+ K+ +N +L+IDDL FVL E+CP +P  NA++ VR+AY+ W
Sbjct: 2   SATLNMLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERW 61

Query: 63  TKANDKTRVYILASLSDVLNKKHEAMMNARQIMESLQEMFGQ 105
            KAN+K R YILASLS VL KKHE+M+  R+IM+SLQEMFGQ
Sbjct: 62  AKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQ 103

[Close]
BLAST of Cla001639 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 5.4e-26
Identity = 57/104 (54.81%), Postives = 82/104 (78.85%), Query Frame = 1 

Query: 1   MSSSIIALVKNEKLTGENYATLKSNLNVILVIDDLQFVLTEKCPPIPVYNASQFVRDAYD 60
           M+S+ + ++  +K  G NYA+ K+ +N +L+IDDL+FVL EKCP +   NA++ VR+AY+
Sbjct: 1   MTSATLNMLVADKFNGNNYASWKNTINTVLIIDDLRFVLVEKCPQVSAANATRTVREAYE 60

Query: 61  CWTKANDKTRVYILASLSDVLNKKHEAMMNARQIMESLQEMFGQ 105
            W KAN+K R Y+LASLS+VL KK+E+M+ AR+IM+SLQEMFGQ
Sbjct: 61  RWAKANEKARAYLLASLSEVLAKKNESMLTAREIMDSLQEMFGQ 104

The following BLAST results are available for this feature:
BLAST of Cla001639 vs. TrEMBL
Match NameE-valueIdentityDescription
E2GK51_BRYDI5.0e-3162.86Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
E2GK52_BRYDI6.4e-2655.24Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
W9SH28_9ROSA7.1e-2554.29Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1[more]
W9RVT2_9ROSA2.1e-2454.29Uncharacterized protein OS=Morus notabilis GN=L484_006473 PE=4 SV=1[more]
W9RMF3_9ROSA2.7e-2453.33Uncharacterized protein OS=Morus notabilis GN=L484_014901 PE=4 SV=1[more]
BLAST of Cla001639 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|299474487|gb|ADJ18449.1|7.2e-3162.86gag/pol protein [Bryonia dioica][more]
gi|659086056|ref|XP_008443743.1|3.6e-3065.71PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo][more]
gi|778697615|ref|XP_011654359.1|3.0e-2961.90PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus][more]
gi|659072276|ref|XP_008464721.1|5.4e-2656.86PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo][more]
gi|659113933|ref|XP_008456826.1|5.4e-2654.81PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001639Cla001639.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 81..101
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001639Wild cucumber (PI 183967)cpiwmB168
Cla001639Watermelon (Charleston Gray)wcgwmB104
Cla001639Bottle gourd (USVL1VR-Ls)lsiwmB113
Cla001639Bottle gourd (USVL1VR-Ls)lsiwmB119
Cla001639Cucumber (Chinese Long) v3cucwmB177
Cla001639Watermelon (97103) v2wmwmbB363