Cla001637 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001637
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr11 : 5552067 .. 5554452 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGAATGCTTGAAATTTCCTCCATCTGAGTATCCTTCTATCGATCTAGATGATTGGGAAATTTTTGTTAATCAAGCTCTATCAGACGACTTCCAGGTTAGTGTTATTAATTATTTTATGTTTGAATCATCAAATATGTTGCTTAATTTAACTTGTATTATGTGGAGTGTATTGTAGGCACGGAGAAATTTGCAGAAAGAGTGGTGCAAACAATACAAATACAATCATAGAACATCACGCAAAGGTTATGCAAATTTAAGTGAGGAGTTGGTAAGTTTTATGTGATAACAATTTATTGTTTACCAATAATTTATTATATGGTGTTCTTCCAACCTTATTTTACTCATATATACTTGTAGAAAAAACAAGGAAAGTTGTCTACAACAATAGATCGAGCTACTGTTTGGGAACATGCTCGACTAAGAAAAAATGGAAAATTTTTAAATAAAGACGTCGAAGAGGTTGCAGTGAAAAAATTGTAAGTAATGATCTAATGATTGCTTCTCTATGAGTGTATGTAATACATTATAACTTATTTGAAAATAAAATGTTTATCTATTAAAATTACAGGATGAACTGTCCAAAGATTGTGTTAACTGTAAAGATTATTCATATGATATATTGACACAAGCATTGGGAACACCTGAACACCGACAACGGGTAAGAGGTGTAGGGGGCTTGGTTACACCATCATTATACTTTCACAAACACATCCCAACAAAACCCACACAAACTTCAAAGAATGGCGATCCAGAGACAAGTTGGAAAAAGGAGAAAGTACTTATTTTGGATCAATATAATTTAATGGTTAAACGTACGCACGAGTTAAATTCTCGAATGAAGGTCGAGGAAACACGTTCGGTTGCACATGATCAACAAATCATATCATCGCCCACACATGAGGAAAAAATAGATCAGGTAAAAATTATATTTACATGCTTTACAAGTTATTGTGTTGATGGATTATTTGATATTGATAATAGATTGACCGTTTGAATGTACATTTTAGGGGAGACCTTGTAGTCTTGCTGTTGGAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAAGAGACAATGGTCTAACGAAGTAGTTTATGGGGTAACACTTGGGGTGAACGATGTGCAGGTTCTCATTGAAGTTGTGGAGGACACCAACTCCACATTACCCATACCTGTTGTTGGAAGTATTTATAGGGTTTCTGATGCAATTGGATCGTATGTTCCATGGCCAAATCATTTTGTGGTTGTAGATAAAGCAGAAAAGGTATATTTTATTTATGAAAACATGAGTTATTTCATTTGAACATGAGTTATTTCATTTGCAAGTTCCGTTTTAATGTTTGACATTTTTTGGAAAGTCACATAAGAAGCATTCCCGAGAGTTAACTTGTTACACCCTCTTTCTAAGATTATTTCGTGGAAGAGCTTATTAAGGAAAGAAGTAGGACAAGAATGGTTGTGTTCGAGTGTTAGTTTACATGGGTTGTTGAGGGAATTTGAATTAGAAGAATTTGATAAAAAGGTTGAGTTGAACGAATCTTGAATAGTTGAGAAGTGAAGTTGGACGCATGGTAGAATCGCTTGACAGCATGTAATTGAGGCAACGTATGGTATTATGCGGTAGAGAATGGAGGAAAGGAAACCTCATCAAGTGATGGGCAAGATTAAAAAGAATAGTTGAGAAGTAAGTGAAGTTGGACGTATGCTTAGTAAAAAGAAAAAAAAACATGTTGGACGCATGGTAGAATCGCTTGACAGCATGTAATTGAGGCAACGTATGGTATTATGCGGTAAAGAAACGCGGCGAGCCTATCGGACATTTGGCAAGTTGAGAAGAAGCTATGAAATGGGCAGTAGTTAAAAAAAATGGCCTAAATAATATGGAGCAGAAGTGGTTAAGTGTTGGCCATGCGTTAGTGGAGCTATGCGTTGAGAATTTGCTGAAGGTCATTAGGCGTTGACGGCCATGCGGCGTTAAGGGCCACAAGGTGTTGGAAGTCACTATGCGTTGAAGGTTGGTATGTATTGGTACCTTAAAAGAAAAGCCGAGAGAGTTATGCATTAGGTAGCTATGCGACGACTGGGCGCTGAATAATTATAAAGCAAGTGTAAGCTATGCGTTGCTGAAGCTTTGCACGGAGGGTTGAGTCGGCCAACCTAAGTAAGGAGGTGATGGCCGTATTGGTAGGTCGGTGGTATGTATATATATAAGTAAGTACGCCGACTCAATCAACACTTTTAGACATAGTTCAAACCCTGATTTACCCTTTTTCACAGAAGAACGACGAGGAGAGGTCGAAGAAACTGTTTAAGCCGGAGTTAAGTAGGAACCAGACCATTTTCATGGTGAAATCGGAACTGAAACCAGAGGCTTGA

mRNA sequence

ATGTCAGAATGCTTGAAATTTCCTCCATCTGAGTATCCTTCTATCGATCTAGATGATTGGGAAATTTTTGTTAATCAAGCTCTATCAGACGACTTCCAGGCACGGAGAAATTTGCAGAAAGAGTGGTGCAAACAATACAAATACAATCATAGAACATCACGCAAAGGTTATGCAAATTTAAGTGAGGAGTTGGTTCTCATTGAAGTTGTGGAGGACACCAACTCCACATTACCCATACCTGTTGTTGGAAGTATTTATAGGGTTTCTGATGCAATTGGATCGTATGTTCCATGGCCAAATCATTTTGTGGTTGTAGATAAAGCAGAAAAGAAGAACGACGAGGAGAGGTCGAAGAAACTGTTTAAGCCGGAGTTAAGTAGGAACCAGACCATTTTCATGGTGAAATCGGAACTGAAACCAGAGGCTTGA

Coding sequence (CDS)

ATGTCAGAATGCTTGAAATTTCCTCCATCTGAGTATCCTTCTATCGATCTAGATGATTGGGAAATTTTTGTTAATCAAGCTCTATCAGACGACTTCCAGGCACGGAGAAATTTGCAGAAAGAGTGGTGCAAACAATACAAATACAATCATAGAACATCACGCAAAGGTTATGCAAATTTAAGTGAGGAGTTGGTTCTCATTGAAGTTGTGGAGGACACCAACTCCACATTACCCATACCTGTTGTTGGAAGTATTTATAGGGTTTCTGATGCAATTGGATCGTATGTTCCATGGCCAAATCATTTTGTGGTTGTAGATAAAGCAGAAAAGAAGAACGACGAGGAGAGGTCGAAGAAACTGTTTAAGCCGGAGTTAAGTAGGAACCAGACCATTTTCATGGTGAAATCGGAACTGAAACCAGAGGCTTGA

Protein sequence

MSECLKFPPSEYPSIDLDDWEIFVNQALSDDFQARRNLQKEWCKQYKYNHRTSRKGYANLSEELVLIEVVEDTNSTLPIPVVGSIYRVSDAIGSYVPWPNHFVVVDKAEKKNDEERSKKLFKPELSRNQTIFMVKSELKPEA

Homology

[Close]

BLAST of Cla001637 vs. TrEMBL
Match: A5BPQ8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025604 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-10
Identity = 47/123 (38.21%), Postives = 68/123 (55.28%), Query Frame = 1


Query: 3    ECLKFPPSEYPSIDLDDWEIFVNQALSDDFQARRNLQKEWCKQYKYNHRTSRKGYANLSE 62
            E LK PP+EY  ID +DW IFV   LS+ FQ  R +QK+  +++ YNH  SRKGYA L E
Sbjct: 895  EFLKKPPAEYHVIDDEDWNIFVKNRLSEKFQEYREIQKQRKEKHIYNHHLSRKGYARLEE 954

Query: 63   ELVLIEVVEDTNSTLPIPVVGSIYRVSDAIGSYVPWPNHFVVVDKAEKKNDEERSKKLFK 122
            E  + E+++++  +      G  Y  S+ I S V       VV+K  +K +EE      +
Sbjct: 955  E--MDELMKESQES------GISYSGSNDILSQV-----LEVVEKPIRKVEEETLPMTIE 1004

Query: 123  PEL 126
            P +
Sbjct: 1015 PHM 1004

[Close]

BLAST of Cla001637 vs. TrEMBL
Match: A5BMG6_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_036906 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.5e-10
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 1


Query: 3   ECLKFPPSEYPSIDLDDWEIFVNQALSDDFQARRNLQKEWCKQYKYNHRTSRKGYANLSE 62
           E LK PP+EY  ID +DW IFV   LS+ FQ  R +QK+  K++ YNH  SRKGYA L E
Sbjct: 885 ELLKKPPAEYHFIDDEDWNIFVKNRLSEKFQEYREVQKQRRKKHIYNHHLSRKGYAGLEE 944

Query: 63  ELV-----LIEV 70
           E++     LIEV
Sbjct: 945 EMLAPQKALIEV 956

[Close]

BLAST of Cla001637 vs. TrEMBL
Match: A5BU47_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003642 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-09
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 1


Query: 3    ECLKFPPSEYPSIDLDDWEIFVNQALSDDFQARRNLQKEWCKQYKYNHRTSRKGYANLSE 62
            E LK PP+EY  ID +DW IFV   LS+ FQ  R  QK+  K++ YNH  SRKGYA L E
Sbjct: 1132 ELLKKPPAEYHFIDDEDWNIFVKNRLSEKFQEYREAQKQRRKKHIYNHHLSRKGYAGLEE 1191

Query: 63   ELV 66
            E++
Sbjct: 1192 EML 1194

[Close]

BLAST of Cla001637 vs. TrEMBL
Match: A5BU47_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003642 PE=4 SV=1)

HSP 1 Score: 37.7 bits (86), Expect = 1.4e+01
Identity = 16/40 (40.00%), Postives = 24/40 (60.00%), Query Frame = 1


Query: 64   LVLIEVVEDTNSTLPIPVVGSIYRVSDAIGSYVPWPNHFV 104
            LV+++   ++N+ LPIP+ G    V  A+G  V WP H V
Sbjct: 1378 LVVLDAPYESNTPLPIPIPGQATTVGAAVGYQVLWPTHLV 1417

HSP 2 Score: 69.3 bits (168), Expect = 4.2e-09
Identity = 35/62 (56.45%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 3  ECLKFPPSEYPSIDLDDWEIFVNQALSDDFQARRNLQKEWCKQYKYNHRTSRKGYANLSE 62
          E LK PP+EY  ID D W+ FV   L +DF+ +    K     YKYNHRTSRKGYANL E
Sbjct: 9  EKLKHPPAEYSFIDQDHWDEFVASRLKEDFEKKSEDGKLKRSLYKYNHRTSRKGYANLVE 68

Query: 63 EL 65
          EL
Sbjct: 69 EL 70

[Close]

BLAST of Cla001637 vs. TrEMBL
Match: A5BSS4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030496 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.5e-09
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1


Query: 3   ECLKFPPSEYPSIDLDDWEIFVNQALSDDFQARRNLQKEWCKQYKYNHRTSRKGYANLSE 62
           E LK  P+EY  ID +DW IFV   LS+ FQ  R +QK+  K++ YNH  SRKGYA L E
Sbjct: 929 ELLKKXPAEYHFIDDEDWNIFVKNRLSEKFQEYREVQKQRRKKHIYNHHLSRKGYARLEE 988

Query: 63  ELVL 67
           E+++
Sbjct: 989 EMMI 992

[Close]

BLAST of Cla001637 vs. NCBI nr
Match: gi|147802365|emb|CAN74849.1| (hypothetical protein VITISV_025604 [Vitis vinifera])

HSP 1 Score: 72.0 bits (175), Expect = 9.4e-10
Identity = 47/123 (38.21%), Postives = 68/123 (55.28%), Query Frame = 1


Query: 3    ECLKFPPSEYPSIDLDDWEIFVNQALSDDFQARRNLQKEWCKQYKYNHRTSRKGYANLSE 62
            E LK PP+EY  ID +DW IFV   LS+ FQ  R +QK+  +++ YNH  SRKGYA L E
Sbjct: 895  EFLKKPPAEYHVIDDEDWNIFVKNRLSEKFQEYREIQKQRKEKHIYNHHLSRKGYARLEE 954

Query: 63   ELVLIEVVEDTNSTLPIPVVGSIYRVSDAIGSYVPWPNHFVVVDKAEKKNDEERSKKLFK 122
            E  + E+++++  +      G  Y  S+ I S V       VV+K  +K +EE      +
Sbjct: 955  E--MDELMKESQES------GISYSGSNDILSQV-----LEVVEKPIRKVEEETLPMTIE 1004

Query: 123  PEL 126
            P +
Sbjct: 1015 PHM 1004

[Close]

BLAST of Cla001637 vs. NCBI nr
Match: gi|147839092|emb|CAN59766.1| (hypothetical protein VITISV_036906 [Vitis vinifera])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 1


Query: 3   ECLKFPPSEYPSIDLDDWEIFVNQALSDDFQARRNLQKEWCKQYKYNHRTSRKGYANLSE 62
           E LK PP+EY  ID +DW IFV   LS+ FQ  R +QK+  K++ YNH  SRKGYA L E
Sbjct: 885 ELLKKPPAEYHFIDDEDWNIFVKNRLSEKFQEYREVQKQRRKKHIYNHHLSRKGYAGLEE 944

Query: 63  ELV-----LIEV 70
           E++     LIEV
Sbjct: 945 EMLAPQKALIEV 956

[Close]

BLAST of Cla001637 vs. NCBI nr
Match: gi|778691681|ref|XP_011653325.1| (PREDICTED: uncharacterized protein LOC105435199 isoform X1 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 36/62 (58.06%), Postives = 41/62 (66.13%), Query Frame = 1


Query: 3   ECLKFPPSEYPSIDLDDWEIFVNQALSDDFQARRNLQKEWCKQYKYNHRTSRKGYANLSE 62
           E LK PP+EY  ID D W+ FV   L +DF+ +    K   K YKYNHRTSRKGYANL E
Sbjct: 108 ENLKRPPAEYSFIDEDHWDEFVASRLKEDFEKKSEEDKLKRKLYKYNHRTSRKGYANLVE 167

Query: 63  EL 65
           EL
Sbjct: 168 EL 169

[Close]

BLAST of Cla001637 vs. NCBI nr
Match: gi|778691692|ref|XP_011653328.1| (PREDICTED: uncharacterized protein LOC105435199 isoform X2 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 36/62 (58.06%), Postives = 41/62 (66.13%), Query Frame = 1


Query: 3   ECLKFPPSEYPSIDLDDWEIFVNQALSDDFQARRNLQKEWCKQYKYNHRTSRKGYANLSE 62
           E LK PP+EY  ID D W+ FV   L +DF+ +    K   K YKYNHRTSRKGYANL E
Sbjct: 71  ENLKRPPAEYSFIDEDHWDEFVASRLKEDFEKKSEEDKLKRKLYKYNHRTSRKGYANLVE 130

Query: 63  EL 65
           EL
Sbjct: 131 EL 132

[Close]

BLAST of Cla001637 vs. NCBI nr
Match: gi|147862302|emb|CAN79325.1| (hypothetical protein VITISV_003642 [Vitis vinifera])

HSP 1 Score: 70.5 bits (171), Expect = 2.7e-09
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 1


Query: 3    ECLKFPPSEYPSIDLDDWEIFVNQALSDDFQARRNLQKEWCKQYKYNHRTSRKGYANLSE 62
            E LK PP+EY  ID +DW IFV   LS+ FQ  R  QK+  K++ YNH  SRKGYA L E
Sbjct: 1132 ELLKKPPAEYHFIDDEDWNIFVKNRLSEKFQEYREAQKQRRKKHIYNHHLSRKGYAGLEE 1191

Query: 63   ELV 66
            E++
Sbjct: 1192 EML 1194

The following BLAST results are available for this feature:

BLAST of Cla001637 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BPQ8_VITVI	6.5e-10	38.21	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025604 PE=4 SV=1	[more]
A5BMG6_VITVI	8.5e-10	52.78	Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_036906 P...	[more]
A5BU47_VITVI	1.9e-09	53.97	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003642 PE=4 SV=1	[more]
A5BU47_VITVI	1.4e+01	40.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003642 PE=4 SV=1	[more]
A5BSS4_VITVI	5.5e-09	51.56	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030496 PE=4 SV=1	[more]

BLAST of Cla001637 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147802365\|emb\|CAN74849.1\|	9.4e-10	38.21	hypothetical protein VITISV_025604 [Vitis vinifera]	[more]
gi\|147839092\|emb\|CAN59766.1\|	1.2e-09	52.78	hypothetical protein VITISV_036906 [Vitis vinifera]	[more]
gi\|778691681\|ref\|XP_011653325.1\|	1.6e-09	58.06	PREDICTED: uncharacterized protein LOC105435199 isoform X1 [Cucumis sativus]	[more]
gi\|778691692\|ref\|XP_011653328.1\|	1.6e-09	58.06	PREDICTED: uncharacterized protein LOC105435199 isoform X2 [Cucumis sativus]	[more]
gi\|147862302\|emb\|CAN79325.1\|	2.7e-09	53.97	hypothetical protein VITISV_003642 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001637	Cla001637.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001637	Bottle gourd (USVL1VR-Ls)	lsiwmB119
Cla001637	Cucumber (Chinese Long) v3	cucwmB177
Cla001637	Watermelon (97103) v2	wmwmbB363
Cla001637	Wild cucumber (PI 183967)	cpiwmB168
Cla001637	Watermelon (Charleston Gray)	wcgwmB104