Cla001607 (gene) Watermelon (97103) v1

Overview
NameCla001607
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr2 : 7986441 .. 7986593 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAGGAAGGAACTTAAAGTTGCCAAGATGCAAGAAGAAATCAATACTCTTGAGATCACTCCTACTATAACCGATGAAGGTGTTGAGGCTTTAACTACAGTTCGGGATAACATGGAGACTGCACGCAATGAATTAAAGAACAGGCTTTGA

mRNA sequence

ATGGGCAGGAAGGAACTTAAAGTTGCCAAGATGCAAGAAGAAATCAATACTCTTGAGATCACTCCTACTATAACCGATGAAGGTGTTGAGGCTTTAACTACAGTTCGGGATAACATGGAGACTGCACGCAATGAATTAAAGAACAGGCTTTGA

Coding sequence (CDS)

ATGGGCAGGAAGGAACTTAAAGTTGCCAAGATGCAAGAAGAAATCAATACTCTTGAGATCACTCCTACTATAACCGATGAAGGTGTTGAGGCTTTAACTACAGTTCGGGATAACATGGAGACTGCACGCAATGAATTAAAGAACAGGCTTTGA

Protein sequence

MGRKELKVAKMQEEINTLEITPTITDEGVEALTTVRDNMETARNELKNRL
Homology
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BLAST of Cla001607 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-05
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 

Query: 3   RKELKVAKMQEEINTLEITPTITDEGVEALTTVRDNMETARNELKN 49
           ++EL+V  +Q+E+NTLE TP IT E ++AL TVR +ME AR E KN
Sbjct: 651 QQELEVFMLQDEVNTLESTPAITKEAIKALATVRQSMEVAREEFKN 696

The following BLAST results are available for this feature:
BLAST of Cla001607 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB9_CUCME1.0e-0556.52Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001607Cla001607.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 29..50
score: -coord: 1..21
scor