Cla001594 (gene) Watermelon (97103) v1

Overview
NameCla001594
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGag-protease polyprotein (AHRD V1 *-*- Q84KB1_CUCME); contains Interpro domain(s) IPR005162 Retrotransposon gag protein
LocationChr2 : 15879795 .. 15880484 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATATGTCTGAGGGTGAATCTAGTCATCCTCAAGCTGAGGTCAATGTCGAGGAACAACTATTTACTAGAATTTCCCAGAGACTGGCTGCAAGCATTAGATCAGGTGGAATCAGATCCAGAAGAAATAAACTGGAATGAGTTTAAGAGGGTCTTCCAAGAAAAATATTGTCTAAGATCATTCCGAGATGCTAAACGGAATGAGTTTTTGAGGTTGATACAGGGATCTATGACAGTGGCAGAATATGAGAAGAAATACACAGAACTATCTAAATACGCCACAACGATTATTGCAAATGAGGCTGACAGATGTAAGTGGTTTGAAGAAGGGTTAAAGGAGGAGATACGAACTCCGGTGACCGCTAGTGTTGAATGGACAGATTTTTCTAGACTAGTGGAGGCAGCTATGCGGGTAGAAAGGAGTTTGATGGAGAAAAAGATGGAGCGTGATTCATCTAAAAGTGGACGTGTAGTCCACTCTTCTGGTGTTATTCCAAGACAGACAGGAAGGAGATTTGTACCTGGCGTGTTTAAAGGAGGAAACTTCAAAACTAGATCGAGCGGACAGACTACTTTTAAGACCAGTACTAGTGGAGGTACACGGGGGCAAGGACCAAAGAACTTTGGTGGTCCGGCGCAGTCAGTAGAAGGTTCTCGAAGTGAACGCATGGTAGTGTTCAACGCATAG

mRNA sequence

ATGGAGATATGTCTGAGGGTGAATCTAGTCATCCTCAAGCTGAGGTCAATGTCGAGGAACAACTATTTACTAGAATTTCCCAGAGACTGGCTGCAAGCATTAGATCAGGTGGAATCAGATCCAGAAGAAATAAACTGGAATGAGTTTAAGAGGGTCTTCCAAGAAAAATATTGTCTAAGATCATTCCGAGATGCTAAACGGAATGAGTTTTTGAGGTTGATACAGGGATCTATGACAGTGGCAGAATATGAGAAGAAATACACAGAACTATCTAAATACGCCACAACGATTATTGCAAATGAGGCTGACAGATGTAAGTGGTTTGAAGAAGGGTTAAAGGAGGAGATACGAACTCCGGTGACCGCTAGTGTTGAATGGACAGATTTTTCTAGACTAGTGGAGGCAGCTATGCGGGTAGAAAGGAGTTTGATGGAGAAAAAGATGGAGCGTGATTCATCTAAAAGTGGACGTGTAGTCCACTCTTCTGGTGTTATTCCAAGACAGACAGGAAGGAGATTTGTACCTGGCGTGTTTAAAGGAGGAAACTTCAAAACTAGATCGAGCGGACAGACTACTTTTAAGACCAGTACTAGTGGAGGTACACGGGGGCAAGGACCAAAGAACTTTGGTGGTCCGGCGCAGTCAGTAGAAGGTTCTCGAAGTGAACGCATGGTAGTGTTCAACGCATAG

Coding sequence (CDS)

ATGGAGATATGTCTGAGGGTGAATCTAGTCATCCTCAAGCTGAGGTCAATGTCGAGGAACAACTATTTACTAGAATTTCCCAGAGACTGGCTGCAAGCATTAGATCAGGTGGAATCAGATCCAGAAGAAATAAACTGGAATGAGTTTAAGAGGGTCTTCCAAGAAAAATATTGTCTAAGATCATTCCGAGATGCTAAACGGAATGAGTTTTTGAGGTTGATACAGGGATCTATGACAGTGGCAGAATATGAGAAGAAATACACAGAACTATCTAAATACGCCACAACGATTATTGCAAATGAGGCTGACAGATGTAAGTGGTTTGAAGAAGGGTTAAAGGAGGAGATACGAACTCCGGTGACCGCTAGTGTTGAATGGACAGATTTTTCTAGACTAGTGGAGGCAGCTATGCGGGTAGAAAGGAGTTTGATGGAGAAAAAGATGGAGCGTGATTCATCTAAAAGTGGACGTGTAGTCCACTCTTCTGGTGTTATTCCAAGACAGACAGGAAGGAGATTTGTACCTGGCGTGTTTAAAGGAGGAAACTTCAAAACTAGATCGAGCGGACAGACTACTTTTAAGACCAGTACTAGTGGAGGTACACGGGGGCAAGGACCAAAGAACTTTGGTGGTCCGGCGCAGTCAGTAGAAGGTTCTCGAAGTGAACGCATGGTAGTGTTCAACGCATAG

Protein sequence

MEICLRVNLVILKLRSMSRNNYLLEFPRDWLQALDQVESDPEEINWNEFKRVFQEKYCLRSFRDAKRNEFLRLIQGSMTVAEYEKKYTELSKYATTIIANEADRCKWFEEGLKEEIRTPVTASVEWTDFSRLVEAAMRVERSLMEKKMERDSSKSGRVVHSSGVIPRQTGRRFVPGVFKGGNFKTRSSGQTTFKTSTSGGTRGQGPKNFGGPAQSVEGSRSERMVVFNA
Homology
[Close]
BLAST of Cla001594 vs. TrEMBL
Match: M5XSR7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.4e-22
Identity = 71/187 (37.97%), Postives = 104/187 (55.61%), Query Frame = 1 

Query: 30  WLQALDQVESDPEEINWNEFKRVFQEKYCLRSFRDAKRNEFLRLIQGSMTVAEYEKKYTE 89
           W +A+ +   +P  INW EF+RVF + +   S++ AK++EFL L QGSM+V EYE K+ E
Sbjct: 130 WWKAVKRGYENPAAINWEEFQRVFSDPFYPPSYKQAKKSEFLYLKQGSMSVVEYEHKFNE 189

Query: 90  LSKYATTIIANEADRCKWFEEGLKEEIRTPVTASVEWTDFSRLVEAAMRVERSLMEKKME 149
           LS++A  ++A E DRC+ FEEGL  EI+  VTA+  + +   L +AA RV R L      
Sbjct: 190 LSRFAPELVATEEDRCRRFEEGLWWEIQAVVTANT-YPNMRALAQAAARVSRKLGGNVSR 249

Query: 150 RDSSKSGRVVHSSGVIPR-QTGRRFVPGVFKGGNFKTRSSGQTTFKTSTSGGTRGQGPKN 209
           R    SG    S G   R  +      G + GG   + SSG++    S S  T+  GP++
Sbjct: 250 RRRDTSGIGGPSQGPSKRGGSSSSSASGGWSGGRGSSSSSGRS---GSRSAWTQYSGPQS 309

Query: 210 FGGPAQS 216
               A++
Sbjct: 310 AASTARA 312

[Close]
BLAST of Cla001594 vs. TrEMBL
Match: M5VK25_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.0e-20
Identity = 70/187 (37.43%), Postives = 102/187 (54.55%), Query Frame = 1 

Query: 30  WLQALDQVESDPEEINWNEFKRVFQEKYCLRSFRDAKRNEFLRLIQGSMTVAEYEKKYTE 89
           W +A+ +   +P  INW EF+RVF E++   S+R AK++EFL L QGSM+V EYE K+ E
Sbjct: 130 WWKAVKRGYENPAAINWEEFQRVFSEQFYPPSYRHAKKSEFLYLKQGSMSVMEYEHKFNE 189

Query: 90  LSKYATTIIANEADRCKWFEEGLKEEIRTPVTASVEWTDFSRLVEAAMRVERSLMEKKME 149
           LS++A  ++A E DRC+ FEEGL  EI+  +TA+  + +   L  A  RV R L      
Sbjct: 190 LSRFAPELVATEEDRCRRFEEGLWWEIQAVITANT-YPNMRALAHAVERVSRKL------ 249

Query: 150 RDSSKSGRVVHSSGVIPRQTGRRFVPGVFKGGNFKTRSSGQTTFKTSTSGG-TRGQGPKN 209
                        G + R+  RR  PG+  GG  +  S    +  +S SGG + G+G  +
Sbjct: 250 ------------GGNVGRR--RRDTPGI--GGPSQGPSKRGGSSSSSASGGWSEGRGSSS 293

Query: 210 FGGPAQS 216
             G + S
Sbjct: 310 SSGRSGS 293

[Close]
BLAST of Cla001594 vs. TrEMBL
Match: M5WQG1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023432mg PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.5e-19
Identity = 72/224 (32.14%), Postives = 113/224 (50.45%), Query Frame = 1 

Query: 1   MEICLRVNLVILKLRSMSRNNYLLEFPRDWLQALDQVESDPEEINWNEFKRVFQEKYCLR 60
           ME  + V  V    R +  + +L+   R W +++ +   DP  I+W  F+ VF  +Y  +
Sbjct: 57  MERIMEVMAVPQDRRVLLASFFLIGNARHWWESIKRRYPDPSVISWPVFRAVFNSQYYPQ 116

Query: 61  SFRDAKRNEFLRLIQGSMTVAEYEKKYTELSKYATTIIANEADRCKWFEEGLKEEIRTPV 120
           ++++ K  EFL+L QG MTV EYEKK+ ELSKY   ++ +E+ +C+ F +GLK  IR  +
Sbjct: 117 AYQNLKMQEFLQLDQGLMTVLEYEKKFNELSKYCIPLVEDESKKCQLFTKGLKASIR-DI 176

Query: 121 TASVEWTDFSRLVEAAMRVERSLMEKKMERD------------SSKSGRVVHSSGVIPRQ 180
             S   T+F  LV +A  VE S M  + + +               S R  +S+G    +
Sbjct: 177 VISQRLTNFGDLVMSASLVESSQMMVRAQGEPRRRLFDLGGPSQGSSKRGSYSAGSSRGR 236

Query: 181 TGRRFVPGV-FKGGNFKTRSSGQTTFKTSTSGGTRGQGPKNFGG 212
           + R F PG+   GG+ ++ S G      +  G  R Q P   GG
Sbjct: 237 SFRGFRPGISSSGGSNRSGSFGSRLVGNAVRGSGR-QSPSAVGG 278

[Close]
BLAST of Cla001594 vs. TrEMBL
Match: M5XAA1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb013312mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.3e-19
Identity = 61/153 (39.87%), Postives = 89/153 (58.17%), Query Frame = 1 

Query: 40  DPEEINWNEFKRVFQEKYCLRSFRDAKRNEFLRLIQGSMTVAEYEKKYTELSKYATTIIA 99
           +P  I W EF+RVF E++   S+R AK++EFL L QGSM+V EYE K+ +LS++A  ++A
Sbjct: 53  NPAAIKWEEFQRVFSEQFYPHSYRHAKKSEFLYLKQGSMSVVEYEHKFNKLSRFAPELVA 112

Query: 100 NEADRCKWFEEGLKEEIRTPVTASVEWTDFSRLVEAAMRVERSLMEKKMERDSSKSGRVV 159
            E DRC+ FEEGL  +I+  VTA+  + +   L +AA RV R L      R    SG   
Sbjct: 113 TEDDRCRRFEEGLCWKIQAVVTANT-YPNMRALAQAAERVSRKLSGSAGRRRRDTSGFGG 172

Query: 160 HSSGVIPR-QTGRRFVPGVFKGGNFKTRSSGQT 192
            S G + R  +      G + GG   + +SG++
Sbjct: 173 PSQGPLKRGGSSSSSASGGWSGGRGSSSNSGRS 204

[Close]
BLAST of Cla001594 vs. TrEMBL
Match: W9QKF9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019698 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-17
Identity = 58/169 (34.32%), Postives = 95/169 (56.21%), Query Frame = 1 

Query: 44  INWNEFKRVFQEKYCLRSFRDAKRNEFLRLIQGSMTVAEYEKKYTELSKYATTIIANEAD 103
           + W +F+ +F E+Y  +S+++ K  EF+ L+QG M++ EYE K+ +LS++A +++ +E  
Sbjct: 36  LTWEQFETLFNEQYFPQSYKEEKALEFMSLLQGDMSIREYEAKFNDLSRFAPSLVESEHM 95

Query: 104 RCKWFEEGLKEEIRTPVTASVEWTDFSRLVEAAMRVERSLM----EKKMERDSSKSGRVV 163
           RC  FE+GLK  +R  + A +   +F  LV AA RVE+  +     KK+    S SGR  
Sbjct: 96  RCLKFEKGLKNSVRRSLVA-LRLRNFQDLVAAATRVEQDNLAYHQSKKVTGQVSVSGRPS 155

Query: 164 HSSGVIPRQTGRRFVPGVFKGGNFKTRSSGQTTFKTSTSGGTRGQGPKN 209
            S G  P+Q+GRR             R+ GQT  K ++ G +  +  +N
Sbjct: 156 VSGG--PQQSGRR------------NRNQGQTARKMTSGGNSSSRSDRN 189

[Close]
BLAST of Cla001594 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 7.7e-46
Identity = 108/222 (48.65%), Postives = 143/222 (64.41%), Query Frame = 1 

Query: 1   MEICLRVNLVILKLRSMSRNNYLLEFPRD-WLQALDQVESDPEEINWNEFKRVFQEKYCL 60
           +E C +V +  L  R +    +LL+   D W +  +    D  EI+WNEFK+ F EKY  
Sbjct: 98  LEKCFKV-MRCLDDRKVELATFLLKKGADYWWRTFESRYHDTNEISWNEFKKAFYEKYYP 157

Query: 61  RSFRDAKRNEFLRLIQGSMTVAEYEKKYTELSKYATTIIANEADRCKWFEEGLKEEIRTP 120
           RS++DAKR+EF RL+ GSMT+AEYEKKY +LSKYAT++I +E DRCK FE+GL+EEIRTP
Sbjct: 158 RSYKDAKRSEFFRLVLGSMTIAEYEKKYIKLSKYATSMIEDEIDRCKRFEDGLREEIRTP 217

Query: 121 VTASVEWTDFSRLVEAAMRVERSLMEKKMERDSSKSGRVVHSSGV----IPRQTGRRFVP 180
           VTAS EW +FS+LVE A+RVE+SL E+K E++ S++     + GV      RQ  RRFV 
Sbjct: 218 VTASSEWKEFSKLVETAVRVEKSLAERKNEKEVSRNVSTAITQGVSRDKSNRQGNRRFVQ 277

Query: 181 GVFKGGNFKTRSSGQ-----TTFKTSTSGGTRGQGPKNFGGP 213
           GV   GNFK+R  G       T  TS    +  +  +N GGP
Sbjct: 278 GVASRGNFKSRRRGSFDYGPNTSATSQVSSSSNRTTRNSGGP 318

[Close]
BLAST of Cla001594 vs. NCBI nr
Match: gi|659118041|ref|XP_008458920.1| (PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 3.7e-32
Identity = 82/173 (47.40%), Postives = 120/173 (69.36%), Query Frame = 1 

Query: 30  WLQALDQVESDPEEINWNEFKRVFQEKYCLRSFRDAKRNEFLRLIQGSMTVAEYEKKYTE 89
           W +++    +D   ++W  F+ +F+EKY   ++ +AKR+EFL L QGS+++AEYE+KYTE
Sbjct: 23  WWKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFLELKQGSLSMAEYERKYTE 82

Query: 90  LSKYATTIIANEADRCKWFEEGLKEEIRTPVTASVEWTDFSRLVEAAMRVERSLMEKKME 149
           LS+YA  I+A+E+DRC  FE GL+ EIRTPVTA  +WT+FS+LVE A+RVE+S++E+K  
Sbjct: 83  LSRYAGMIMASESDRCHRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIVEEKSA 142

Query: 150 RDSSKSGRVVHSSGVI-PRQTGRRFVPGVFKGG--NFKTRSSGQTTFKTSTSG 200
            + S+   V  +SG+  P Q  RRF  GV   G  +FK RS G+  F+  +SG
Sbjct: 143 MELSRG--VSTTSGIRGPEQ--RRFTSGVNVSGCQDFKRRSGGK-PFRQMSSG 190

[Close]
BLAST of Cla001594 vs. NCBI nr
Match: gi|659133542|ref|XP_008466780.1| (PREDICTED: uncharacterized protein LOC103504112 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 2.6e-30
Identity = 77/161 (47.83%), Postives = 111/161 (68.94%), Query Frame = 1 

Query: 49  FKRVFQEKYCLRSFRDAKRNEFLRLIQGSMTVAEYEKKYTELSKYATTIIANEADRCKWF 108
           F+ +F+EKY   ++ +AKR+EFL L QGS+ V EYE KYTELS+YA  I+A+E+DRC+ F
Sbjct: 47  FRGIFEEKYYPTTYCEAKRDEFLELKQGSLLVVEYEMKYTELSRYAEMIVASESDRCRRF 106

Query: 109 EEGLKEEIRTPVTASVEWTDFSRLVEAAMRVERSLMEKKMERDSSKSGRVVHSSGVIPRQ 168
           E GL+ E+RTPVTA  +WT+FS+LVE A+RVE+S++E+K   + S+   V  +SG+  R+
Sbjct: 107 ERGLRFELRTPVTAIAKWTNFSQLVETALRVEQSIVEEKSAMELSRG--VSTTSGIRGRE 166

Query: 169 TGRRFVPGVFKGG--NFKTRSSGQTTFKTSTSGGTRGQGPK 208
             RRF PGV   G  +FK RS G+   + S+    + Q  +
Sbjct: 167 Q-RRFTPGVNVSGCQDFKRRSGGKPLRQMSSGTAYQRQSQR 204

[Close]
BLAST of Cla001594 vs. NCBI nr
Match: gi|659112465|ref|XP_008456237.1| (PREDICTED: uncharacterized protein LOC103496240 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 7.2e-28
Identity = 76/159 (47.80%), Postives = 107/159 (67.30%), Query Frame = 1 

Query: 54  QEKYCLRSFRDAKRNEFLRLIQGSMTVAEYEKKYTELSKYATTIIANEADRCKWFEEGLK 113
           +EKY   ++ +AKR+EFL L QGS +VAEYE+KYTELS+YA  I+A+E+D C+ FE GL+
Sbjct: 72  EEKYYPTTYCEAKRDEFLELKQGSFSVAEYERKYTELSRYAEMIVASESDMCRRFERGLR 131

Query: 114 EEIRTPVTASVEWTDFSRLVEAAMRVERSLMEKKMERDSSKSGRVVHSSGVIPRQTGRRF 173
            EIRT VTA  +WT+FS+LVE A+RVE+S++E+K   + S+   V  +SG+  R+  RRF
Sbjct: 132 FEIRTLVTAIAKWTNFSQLVETALRVEQSIVEEKSAMELSRG--VSTTSGIRGREQ-RRF 191

Query: 174 VPGVFKGG--NFKTRSSGQTTFKTSTSGGTRGQGPKNFG 211
            PGV   G  +FK RS G+   + S+       G  + G
Sbjct: 192 TPGVNVSGCQDFKRRSGGKPLRQMSSGSAYPSCGKSHRG 227

[Close]
BLAST of Cla001594 vs. NCBI nr
Match: gi|659130058|ref|XP_008464978.1| (PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 3.6e-27
Identity = 75/184 (40.76%), Postives = 111/184 (60.33%), Query Frame = 1 

Query: 38  ESDPEEINWNEFKRVFQEKYCLRSFRDAKRNEFLRLIQGSMTVAEYEKKYTELSKYATTI 97
           E   +  N   F+ +F+EKY   ++ +AKR+EFL L QGS++V EYE+KYTELS+YA  I
Sbjct: 16  EGFTDPANTETFRGIFEEKYYPTTYYEAKRDEFLELKQGSLSVVEYERKYTELSRYAEMI 75

Query: 98  IANEADRCKWFEEGLKEEIRTPVTASVEWTDFSRLVEAAMRVERSLMEKKMERDSSKSGR 157
           +A+E+DRC+ FE GL+ EIRTP+TA  +W +FS+LVE A+RVE+S++E+K   + S+   
Sbjct: 76  VASESDRCRRFERGLRFEIRTPMTAIAKWMNFSQLVETALRVEQSIVEEKSTMELSRG-- 135

Query: 158 VVHSSGVIPRQTGRRFVPGVFKGGNFKTRSSGQTTFKTSTSGGTRGQGPKNFGGPAQSVE 217
           V  +SG                  +FK RS G+   + S+    + Q  +     A SV 
Sbjct: 136 VSTTSGC----------------QDFKHRSGGKPLRQMSSGSAYQRQSQRASSQSANSVA 181

Query: 218 GSRS 222
            SR+
Sbjct: 196 RSRT 181

The following BLAST results are available for this feature:
BLAST of Cla001594 vs. TrEMBL
Match NameE-valueIdentityDescription
M5XSR7_PRUPE5.4e-2237.97Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1[more]
M5VK25_PRUPE5.0e-2037.43Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1[more]
M5WQG1_PRUPE2.5e-1932.14Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023432mg PE=4 S... [more]
M5XAA1_PRUPE4.3e-1939.87Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb013312mg PE=4 S... [more]
W9QKF9_9ROSA1.4e-1734.32Uncharacterized protein OS=Morus notabilis GN=L484_019698 PE=4 SV=1[more]
BLAST of Cla001594 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116534|ref|XP_008458118.1|7.7e-4648.65PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|659118041|ref|XP_008458920.1|3.7e-3247.40PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo][more]
gi|659133542|ref|XP_008466780.1|2.6e-3047.83PREDICTED: uncharacterized protein LOC103504112 [Cucumis melo][more]
gi|659112465|ref|XP_008456237.1|7.2e-2847.80PREDICTED: uncharacterized protein LOC103496240 [Cucumis melo][more]
gi|659130058|ref|XP_008464978.1|3.6e-2740.76PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001594Cla001594.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 28..114
score: 1.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001594Watermelon (97103) v2wmwmbB321
Cla001594Watermelon (97103) v2wmwmbB330
Cla001594Watermelon (97103) v1wmwmB005
Cla001594Watermelon (Charleston Gray)wcgwmB213
Cla001594Cucurbita pepo (Zucchini)cpewmB308