Cla001587 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001587
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	LOB domain family protein (AHRD V1 -- D7KR59_ARALL); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB
Location	Chr2 : 15746393 .. 15747085 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAAGCACAATAACGAAGTTTTGCAGACTACATCAGCTTGTGCAGCTTGCAAACACCAGAGGAAGAAATGTCACGAGACGTGCCCGTTGGCACCGTACTTTCCTGCGGATCGAAACAGGGAATTCCAAGCCGTTCACAAGGTGTTTGGAGTGAGCAACGTGACCAAGATGGTGAAAAACGTAAGAGAAGAAGACAAGAGAAAGGCTGTGGATTCTTTAGTTTGGGAGGCTGTTTGTAGGCAAAACGACCCCGTTTTGGGGCCCTATGGTGAATACAAAAGGGTTTTGGAAGAGCTAAAAGTGTGTAAATTATTGACTCAAAACCAAAGCATTATGAATGGAGGGCAAGTGGGATTGGGTTATAAACCAATAATGCCGTGTTTAGGAGGATGGAATAATAGTAATAATAATAATAATGCAAGTGGAAATTCGATTAATAATGGGAATGGAATTATGGGGATAATCAATGGAGGAGTTAATAGCAACCATTTGTTTAGTTACCTTCATGATAATAATGTAAGTGCTATTATTGATTCAAGTCCTTATAGTAATTCTTCAACATATAATTTGCAAAGCCCTGAGAAATTGATGAGATTGCAGCAAGATAAAGAGATTAGTTCAAGCATCGTTGTGCCACTTCAACAGCAGCAACAACAGCAGCATCATCCCACTTTTCACCATTGTTTTTAG

mRNA sequence

ATGCAAAAGCACAATAACGAAGTTTTGCAGACTACATCAGCTTGTGCAGCTTGCAAACACCAGAGGAAGAAATGTCACGAGACGTGCCCGTTGGCACCGTACTTTCCTGCGGATCGAAACAGGGAATTCCAAGCCGTTCACAAGGTGTTTGGAGTGAGCAACGTGACCAAGATGGTGAAAAACGTAAGAGAAGAAGACAAGAGAAAGGCTGTGGATTCTTTAGTTTGGGAGGCTGTTTGTAGGCAAAACGACCCCGTTTTGGGGCCCTATGGTGAATACAAAAGGGTTTTGGAAGAGCTAAAAGTGTGTAAATTATTGACTCAAAACCAAAGCATTATGAATGGAGGGCAAGTGGGATTGGGTTATAAACCAATAATGCCGTGTTTAGGAGGATGGAATAATAGTAATAATAATAATAATGCAAGTGGAAATTCGATTAATAATGGGAATGGAATTATGGGGATAATCAATGGAGGAGTTAATAGCAACCATTTGTTTAGTTACCTTCATGATAATAATGTAAGTGCTATTATTGATTCAAGTCCTTATAGTAATTCTTCAACATATAATTTGCAAAGCCCTGAGAAATTGATGAGATTGCAGCAAGATAAAGAGATTAGTTCAAGCATCGTTGTGCCACTTCAACAGCAGCAACAACAGCAGCATCATCCCACTTTTCACCATTGTTTTTAG

Coding sequence (CDS)

ATGCAAAAGCACAATAACGAAGTTTTGCAGACTACATCAGCTTGTGCAGCTTGCAAACACCAGAGGAAGAAATGTCACGAGACGTGCCCGTTGGCACCGTACTTTCCTGCGGATCGAAACAGGGAATTCCAAGCCGTTCACAAGGTGTTTGGAGTGAGCAACGTGACCAAGATGGTGAAAAACGTAAGAGAAGAAGACAAGAGAAAGGCTGTGGATTCTTTAGTTTGGGAGGCTGTTTGTAGGCAAAACGACCCCGTTTTGGGGCCCTATGGTGAATACAAAAGGGTTTTGGAAGAGCTAAAAGTGTGTAAATTATTGACTCAAAACCAAAGCATTATGAATGGAGGGCAAGTGGGATTGGGTTATAAACCAATAATGCCGTGTTTAGGAGGATGGAATAATAGTAATAATAATAATAATGCAAGTGGAAATTCGATTAATAATGGGAATGGAATTATGGGGATAATCAATGGAGGAGTTAATAGCAACCATTTGTTTAGTTACCTTCATGATAATAATGTAAGTGCTATTATTGATTCAAGTCCTTATAGTAATTCTTCAACATATAATTTGCAAAGCCCTGAGAAATTGATGAGATTGCAGCAAGATAAAGAGATTAGTTCAAGCATCGTTGTGCCACTTCAACAGCAGCAACAACAGCAGCATCATCCCACTTTTCACCATTGTTTTTAG

Protein sequence

MQKHNNEVLQTTSACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTKMVKNVREEDKRKAVDSLVWEAVCRQNDPVLGPYGEYKRVLEELKVCKLLTQNQSIMNGGQVGLGYKPIMPCLGGWNNSNNNNNASGNSINNGNGIMGIINGGVNSNHLFSYLHDNNVSAIIDSSPYSNSSTYNLQSPEKLMRLQQDKEISSSIVVPLQQQQQQQHHPTFHHCF

Homology

[Close]

BLAST of Cla001587 vs. Swiss-Prot
Match: LBD2_ARATH (LOB domain-containing protein 2 OS=Arabidopsis thaliana GN=LBD2 PE=2 SV=2)

HSP 1 Score: 159.8 bits (403), Expect = 3.5e-38
Identity = 86/179 (48.04%), Postives = 110/179 (61.45%), Query Frame = 1


Query: 1   MQKHNNEVLQTTS---------ACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFG 60
           MQ+++N    T++         ACA+CKHQRKKC+  C L+PYFPA + +EFQAVHKVFG
Sbjct: 2   MQRNSNNTSITSNISNNSSSHQACASCKHQRKKCNNECILSPYFPARKTKEFQAVHKVFG 61

Query: 61  VSNVTKMVKNVREEDKRKAVDSLVWEAVCRQNDPVLGPYGEYKRVLEELKVCKLLTQNQS 120
           VSNV KMV+ VREED+ K  DSL WEA+ RQ DPVLG YGEY+R+ EELK+ K L  NQ 
Sbjct: 62  VSNVQKMVRTVREEDRTKLSDSLTWEALWRQKDPVLGSYGEYRRICEELKLYKSLVHNQP 121

Query: 121 IMNGGQVGLGYKPIMPCLGGWNN-----SNNNNNASGNSINN--GNGIMGIINGGVNSN 164
           ++                 GW+N     +NN+NN +G ++ N  G+G   + N GV  N
Sbjct: 122 LI-----------------GWDNNQRVFNNNSNNKNGLAMTNSSGSGGFSVNNNGVGVN 163

[Close]

BLAST of Cla001587 vs. Swiss-Prot
Match: LBD22_ARATH (LOB domain-containing protein 22 OS=Arabidopsis thaliana GN=LBD22 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-19
Identity = 43/91 (47.25%), Postives = 64/91 (70.33%), Query Frame = 1


Query: 11  TTSACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTKMVKNVREEDKRKA 70
           T  ACAACK+QR+KC   C LAPYFP DR+R+F   HK+FGVSN+TK++K++   +K  A
Sbjct: 33  TNQACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAA 92

Query: 71  VDSLVWEAVCRQNDPVLGPYGEYKRVLEELK 102
           + ++++++  R NDPV G YG  K++  +++
Sbjct: 93  MHTIMFQSDARANDPVDGCYGIIKKLQYQIE 123

[Close]

BLAST of Cla001587 vs. Swiss-Prot
Match: LBD7_ARATH (LOB domain-containing protein 7 OS=Arabidopsis thaliana GN=LBD7 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.3e-18
Identity = 47/95 (49.47%), Postives = 62/95 (65.26%), Query Frame = 1


Query: 11  TTSACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTKMVKNVREEDKRKA 70
           +T+ACAACKHQRKKC + C LA YFP D   +F   HK+FGVSN+TKM+K + E  +  A
Sbjct: 10  STTACAACKHQRKKCKKNCILARYFPQDGTNKFLNAHKLFGVSNITKMLKRIEESQRDIA 69

Query: 71  VDSLVWEAVCRQNDPVLGPYGEYKRVLEELKVCKL 106
           +++L++ A  R  DPV G Y    R + +LK CK+
Sbjct: 70  MENLIYHANARALDPVGGVY----RTICDLK-CKI 99

[Close]

BLAST of Cla001587 vs. Swiss-Prot
Match: LBD28_ARATH (LOB domain-containing protein 28 OS=Arabidopsis thaliana GN=LBD28 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-16
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 1


Query: 12  TSACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTKMVKNVREEDKRKAV 71
           ++ CAACKH R+KC E C  APYFP+ +   ++AVHKVFG S+V  ++ ++    +  A+
Sbjct: 10  STPCAACKHLRRKCTEDCVFAPYFPSTKLDNYEAVHKVFGASHVATLINSLHPCQREFAM 69

Query: 72  DSLVWEAVCRQNDPVLGPYGEYKRVLEELK 102
           D+L WEA  + NDPV G  G    +L ++K
Sbjct: 70  DTLAWEAQVQANDPVNGCLGIIYNLLSQIK 99

[Close]

BLAST of Cla001587 vs. Swiss-Prot
Match: LBD6_ARATH (LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-16
Identity = 42/91 (46.15%), Postives = 53/91 (58.24%), Query Frame = 1


Query: 11  TTSACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTKMVKNVREEDKRKA 70
           T S CAACK  R+KC   C  APYFP D+ ++F  VHKVFG SNVTK++  +    +  A
Sbjct: 6   TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDA 65

Query: 71  VDSLVWEAVCRQNDPVLGPYGEYKRVLEELK 102
           V+SL +EA  R  DPV G  G    +  +L+
Sbjct: 66  VNSLAYEADMRLRDPVYGCVGVISLLQHQLR 96

[Close]

BLAST of Cla001587 vs. TrEMBL
Match: A0A0A0LMR3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416060 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 4.0e-49
Identity = 94/100 (94.00%), Postives = 97/100 (97.00%), Query Frame = 1


Query: 1   MQKHNNEVLQTTSACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTKMVK 60
           MQKHNN VLQ T ACAACKHQRKKCHETCPLAPYFPA+RNREFQAVHKVFGVSNVTKMVK
Sbjct: 1   MQKHNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVK 60

Query: 61  NVREEDKRKAVDSLVWEAVCRQNDPVLGPYGEYKRVLEEL 101
           NVREEDKRKAVDSL+WEAVCRQNDPVLGPYGEYKRVLEE+
Sbjct: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEM 100

[Close]

BLAST of Cla001587 vs. TrEMBL
Match: V4THT3_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10017646mg PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.1e-46
Identity = 115/244 (47.13%), Postives = 153/244 (62.70%), Query Frame = 1


Query: 1   MQKHNNEVLQTTS---ACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTK 60
           MQ++NN    T+S   ACAACKHQRKKC E C LA YFPA+R++EFQAVHKVFGVSNVTK
Sbjct: 2   MQRNNNNSSTTSSVQSACAACKHQRKKCSEDCKLARYFPANRSKEFQAVHKVFGVSNVTK 61

Query: 61  MVKNVREEDKR-KAVDSLVWEAVCRQNDPVLGPYGEYKRVLEELKVCKLLT--------- 120
           +V+N  +E+ R K VDSL+WEA  RQ DPV GPYGEY+R+ EELK+ +  T         
Sbjct: 62  IVQNANDEESRQKVVDSLIWEAFWRQKDPVSGPYGEYQRICEELKLYRSQTLMQNHNHRN 121

Query: 121 -QNQSIMNGGQVGLGYKPIMPCLGGWNNSNNNNNASGNSINNGNGIMGIINGGVNSNHLF 180
             +Q +   GQ G+ Y+     L GWNN  N N          NGI    N  +N N+  
Sbjct: 122 QNHQLVQLPGQGGMIYRSSSQPLMGWNNGMNTN----------NGISVSGNEQLNYNN-- 181

Query: 181 SYLHDNNVSAIIDSSPYSNSSTYNLQSPEKLMRLQQDKEISSSIVVPLQQQQQQQHHPTF 231
              HDN  ++I+D   YS +S + +QSP+    L+Q++E+  ++V+PLQQQQQQ+  P+ 
Sbjct: 182 ---HDNGNNSIVDLDTYSFASHF-VQSPK---NLKQEREV-GTVVIPLQQQQQQRQQPSI 225

[Close]

BLAST of Cla001587 vs. TrEMBL
Match: A0A067DW22_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047118mg PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.4e-46
Identity = 116/245 (47.35%), Postives = 152/245 (62.04%), Query Frame = 1


Query: 1   MQKHNNEVLQTTS---ACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTK 60
           MQ++NN    T+S   ACAACKHQRKKC E C LA YFPA+R++EFQAVHKVFGVSNVTK
Sbjct: 2   MQRNNNNSSTTSSVQSACAACKHQRKKCSEDCKLARYFPANRSKEFQAVHKVFGVSNVTK 61

Query: 61  MVKNVREEDKR-KAVDSLVWEAVCRQNDPVLGPYGEYKRVLEELKVCKLLT--------- 120
           +V+N  +E+ R K VDSL+WEA  RQ DPV GPYGEY+RV EELK+ +  T         
Sbjct: 62  IVQNANDEESRQKVVDSLIWEAFWRQKDPVSGPYGEYQRVCEELKLYRSQTLMQNHNHRN 121

Query: 121 -QNQSIMNGGQVGLGYKPIMPCLGGWNNSNNNNNASGNSINNGNGIMGIINGGVNSNHLF 180
             +Q +   GQ G+ Y+     L GWNN  N NN             GI    V+ N   
Sbjct: 122 QNHQLVQLPGQGGMIYRSSSQPLMGWNNGMNTNN-------------GI---SVSGNEQL 181

Query: 181 SY-LHDNNVSAIIDSSPYSNSSTYNLQSPEKLMRLQQDKEISSSIVVPLQQQQQQQHHPT 231
            Y  HDN  ++I+D   YS +S + +QSP+    L+Q++E+  ++V+PLQQQQQQ+  P+
Sbjct: 182 DYNNHDNGNNSIVDLDTYSFASHF-VQSPK---NLKQEREV-GTVVIPLQQQQQQRQQPS 225

[Close]

BLAST of Cla001587 vs. TrEMBL
Match: K4DCG8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.8e-41
Identity = 98/219 (44.75%), Postives = 134/219 (61.19%), Query Frame = 1


Query: 1   MQKHNNEVLQTTSACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTKMVK 60
           MQK N       +ACA+CKHQRKKC + C LAPYFPA++ REF+AVHKVFGVSN+TK+VK
Sbjct: 1   MQKPNG-----LAACASCKHQRKKCTDKCVLAPYFPAEKIREFKAVHKVFGVSNITKIVK 60

Query: 61  NVREEDKRKAVDSLVWEAVCRQNDPVLGPYGEYKRVLEELKVCKLLTQNQSIMNGGQVGL 120
           N++E+D+R+A++SL+WEA CRQ DPVLGPYGEYKRV EELK+ K  +Q Q I+  G    
Sbjct: 61  NLKEDDRRRAIESLIWEAFCRQRDPVLGPYGEYKRVYEELKLYK--SQYQQILQAG---- 120

Query: 121 GYKPIMPCLGGWNNSNNNNNASGNSINNGNGIMGIING---GVNSNHLFSYLHDNNVSAI 180
                        ++NNN +++ N +       G+ING       N +    HDN  S +
Sbjct: 121 -------------SNNNNTDSNVNGMIYDATTQGLINGWNINTKRNDINYINHDN--STV 180

Query: 181 IDSSPYSNSSTYNLQSPEKLMRLQQDKEISSSIVVPLQQ 217
              S Y+N     L   + + +L+ +    S ++VP QQ
Sbjct: 181 ESWSSYNNKIINPLHHVQNIEKLRTENSNGSIVIVPQQQ 193

[Close]

BLAST of Cla001587 vs. TrEMBL
Match: U5FT53_POPTR (LOB domain family protein OS=Populus trichocarpa GN=POPTR_0013s12770g PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.4e-40
Identity = 100/240 (41.67%), Postives = 147/240 (61.25%), Query Frame = 1


Query: 3   KHNNEVLQTTSACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTKMVKNV 62
           + +N  +    ACA+CKHQRK+C E C LAPYFPA+R +EFQAVHKVFGVSNV K+VK+V
Sbjct: 5   RDSNNRVAMHQACASCKHQRKRCAEDCVLAPYFPAERMQEFQAVHKVFGVSNVIKLVKDV 64

Query: 63  REEDKRKAVDSLVWEAVCRQNDPVLGPYGEYKRVLEELKVCKLLT--QNQSIMNGGQVGL 122
            +E +++  DSLVWEA CRQ+DPVLG YG++K++ EEL++ K+ T   NQ+I+   Q G 
Sbjct: 65  DKERQKETADSLVWEASCRQDDPVLGCYGKFKKIQEELELYKMQTPLPNQNILRQRQGGA 124

Query: 123 GYKPIMPCLGGWNNSNNNNNASGNSINNGNGIMGIINGGVNSNHLFSYLHDNNVSAIIDS 182
            Y    P L  WN ++  N       N GNG    I GG+ +N++ +Y HDN+ S ++DS
Sbjct: 125 AYNK-QPLLLAWNATHGIN-------NRGNG----IGGGLANNNVANYCHDNS-SLMVDS 184

Query: 183 SPYSNSSTYNLQSPEKLMRLQQDKEISSSIVVPLQQ------------QQQQQHHPTFHH 229
            P+S    Y  Q      +   +++ ++S+++P+Q              QQ+ +HP   +
Sbjct: 185 VPHS----YPWQFVRGQDKSNPERD-ATSLLLPIQPSPPPHPFSVNGFNQQEYYHPVMRY 226

[Close]

BLAST of Cla001587 vs. NCBI nr
Match: gi|700208096|gb|KGN63215.1| (hypothetical protein Csa_2G416060 [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 5.7e-49
Identity = 94/100 (94.00%), Postives = 97/100 (97.00%), Query Frame = 1


Query: 1   MQKHNNEVLQTTSACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTKMVK 60
           MQKHNN VLQ T ACAACKHQRKKCHETCPLAPYFPA+RNREFQAVHKVFGVSNVTKMVK
Sbjct: 1   MQKHNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVK 60

Query: 61  NVREEDKRKAVDSLVWEAVCRQNDPVLGPYGEYKRVLEEL 101
           NVREEDKRKAVDSL+WEAVCRQNDPVLGPYGEYKRVLEE+
Sbjct: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEM 100

[Close]

BLAST of Cla001587 vs. NCBI nr
Match: gi|778674434|ref|XP_011650212.1| (PREDICTED: LOB domain-containing protein 2-like [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 7.4e-49
Identity = 94/100 (94.00%), Postives = 97/100 (97.00%), Query Frame = 1


Query: 1   MQKHNNEVLQTTSACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTKMVK 60
           MQKHNN VLQ T ACAACKHQRKKCHETCPLAPYFPA+RNREFQAVHKVFGVSNVTKMVK
Sbjct: 1   MQKHNNGVLQGTPACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVK 60

Query: 61  NVREEDKRKAVDSLVWEAVCRQNDPVLGPYGEYKRVLEEL 101
           NVREEDKRKAVDSL+WEAVCRQNDPVLGPYGEYKRVLEE+
Sbjct: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEV 100

[Close]

BLAST of Cla001587 vs. NCBI nr
Match: gi|659111843|ref|XP_008455936.1| (PREDICTED: LOB domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 202.2 bits (513), Expect = 9.7e-49
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 1


Query: 1   MQKHNNEVLQTTSACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTKMVK 60
           MQ+HNN +LQ T ACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTKMVK
Sbjct: 1   MQRHNNGLLQATPACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTKMVK 60

Query: 61  NVREEDKRKAVDSLVWEAVCRQNDPVLGPYGEYKRVLEE 100
           NVREEDKRKAVDSL+WEAVCRQNDPVLGPYGEYKRVLEE
Sbjct: 61  NVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEE 99

[Close]

BLAST of Cla001587 vs. NCBI nr
Match: gi|567908849|ref|XP_006446738.1| (hypothetical protein CICLE_v10017646mg, partial [Citrus clementina])

HSP 1 Score: 194.9 bits (494), Expect = 1.5e-46
Identity = 115/244 (47.13%), Postives = 153/244 (62.70%), Query Frame = 1


Query: 1   MQKHNNEVLQTTS---ACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTK 60
           MQ++NN    T+S   ACAACKHQRKKC E C LA YFPA+R++EFQAVHKVFGVSNVTK
Sbjct: 2   MQRNNNNSSTTSSVQSACAACKHQRKKCSEDCKLARYFPANRSKEFQAVHKVFGVSNVTK 61

Query: 61  MVKNVREEDKR-KAVDSLVWEAVCRQNDPVLGPYGEYKRVLEELKVCKLLT--------- 120
           +V+N  +E+ R K VDSL+WEA  RQ DPV GPYGEY+R+ EELK+ +  T         
Sbjct: 62  IVQNANDEESRQKVVDSLIWEAFWRQKDPVSGPYGEYQRICEELKLYRSQTLMQNHNHRN 121

Query: 121 -QNQSIMNGGQVGLGYKPIMPCLGGWNNSNNNNNASGNSINNGNGIMGIINGGVNSNHLF 180
             +Q +   GQ G+ Y+     L GWNN  N N          NGI    N  +N N+  
Sbjct: 122 QNHQLVQLPGQGGMIYRSSSQPLMGWNNGMNTN----------NGISVSGNEQLNYNN-- 181

Query: 181 SYLHDNNVSAIIDSSPYSNSSTYNLQSPEKLMRLQQDKEISSSIVVPLQQQQQQQHHPTF 231
              HDN  ++I+D   YS +S + +QSP+    L+Q++E+  ++V+PLQQQQQQ+  P+ 
Sbjct: 182 ---HDNGNNSIVDLDTYSFASHF-VQSPK---NLKQEREV-GTVVIPLQQQQQQRQQPSI 225

[Close]

BLAST of Cla001587 vs. NCBI nr
Match: gi|641826548|gb|KDO45765.1| (hypothetical protein CISIN_1g047118mg [Citrus sinensis])

HSP 1 Score: 193.7 bits (491), Expect = 3.5e-46
Identity = 116/245 (47.35%), Postives = 152/245 (62.04%), Query Frame = 1


Query: 1   MQKHNNEVLQTTS---ACAACKHQRKKCHETCPLAPYFPADRNREFQAVHKVFGVSNVTK 60
           MQ++NN    T+S   ACAACKHQRKKC E C LA YFPA+R++EFQAVHKVFGVSNVTK
Sbjct: 2   MQRNNNNSSTTSSVQSACAACKHQRKKCSEDCKLARYFPANRSKEFQAVHKVFGVSNVTK 61

Query: 61  MVKNVREEDKR-KAVDSLVWEAVCRQNDPVLGPYGEYKRVLEELKVCKLLT--------- 120
           +V+N  +E+ R K VDSL+WEA  RQ DPV GPYGEY+RV EELK+ +  T         
Sbjct: 62  IVQNANDEESRQKVVDSLIWEAFWRQKDPVSGPYGEYQRVCEELKLYRSQTLMQNHNHRN 121

Query: 121 -QNQSIMNGGQVGLGYKPIMPCLGGWNNSNNNNNASGNSINNGNGIMGIINGGVNSNHLF 180
             +Q +   GQ G+ Y+     L GWNN  N NN             GI    V+ N   
Sbjct: 122 QNHQLVQLPGQGGMIYRSSSQPLMGWNNGMNTNN-------------GI---SVSGNEQL 181

Query: 181 SY-LHDNNVSAIIDSSPYSNSSTYNLQSPEKLMRLQQDKEISSSIVVPLQQQQQQQHHPT 231
            Y  HDN  ++I+D   YS +S + +QSP+    L+Q++E+  ++V+PLQQQQQQ+  P+
Sbjct: 182 DYNNHDNGNNSIVDLDTYSFASHF-VQSPK---NLKQEREV-GTVVIPLQQQQQQRQQPS 225

The following BLAST results are available for this feature:

BLAST of Cla001587 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD2_ARATH	3.5e-38	48.04	LOB domain-containing protein 2 OS=Arabidopsis thaliana GN=LBD2 PE=2 SV=2	[more]
LBD22_ARATH	1.6e-19	47.25	LOB domain-containing protein 22 OS=Arabidopsis thaliana GN=LBD22 PE=2 SV=1	[more]
LBD7_ARATH	2.3e-18	49.47	LOB domain-containing protein 7 OS=Arabidopsis thaliana GN=LBD7 PE=2 SV=1	[more]
LBD28_ARATH	1.7e-16	43.33	LOB domain-containing protein 28 OS=Arabidopsis thaliana GN=LBD28 PE=2 SV=1	[more]
LBD6_ARATH	1.7e-16	46.15	LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1	[more]

BLAST of Cla001587 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMR3_CUCSA	4.0e-49	94.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416060 PE=4 SV=1	[more]
V4THT3_9ROSI	1.1e-46	47.13	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10017646mg PE=...	[more]
A0A067DW22_CITSI	2.4e-46	47.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047118mg PE=4 SV=1	[more]
K4DCG8_SOLLC	1.8e-41	44.75	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
U5FT53_POPTR	4.4e-40	41.67	LOB domain family protein OS=Populus trichocarpa GN=POPTR_0013s12770g PE=4 SV=1	[more]

BLAST of Cla001587 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208096\|gb\|KGN63215.1\|	5.7e-49	94.00	hypothetical protein Csa_2G416060 [Cucumis sativus]	[more]
gi\|778674434\|ref\|XP_011650212.1\|	7.4e-49	94.00	PREDICTED: LOB domain-containing protein 2-like [Cucumis sativus]	[more]
gi\|659111843\|ref\|XP_008455936.1\|	9.7e-49	93.94	PREDICTED: LOB domain-containing protein 2-like [Cucumis melo]	[more]
gi\|567908849\|ref\|XP_006446738.1\|	1.5e-46	47.13	hypothetical protein CICLE_v10017646mg, partial [Citrus clementina]	[more]
gi\|641826548\|gb\|KDO45765.1\|	3.5e-46	47.35	hypothetical protein CISIN_1g047118mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001587	Cla001587.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 14..101 score: 2.5
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 13..113 score: 22
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 6..102 score: 5.2
None	No IPR available	PANTHER	PTHR31301:SF19	LOB DOMAIN-CONTAINING PROTEIN 2	coord: 6..102 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001587	Cla97C02G036240	Watermelon (97103) v2	wmwmbB330
Cla001587	ClCG02G010110	Watermelon (Charleston Gray)	wcgwmB213

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001587	Watermelon (97103) v2	wmwmbB321
Cla001587	Watermelon (97103) v1	wmwmB005