Cla001526 (gene) Watermelon (97103) v1

Overview
NameCla001526
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 16733105 .. 16733455 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGTTGCTGAATATGAAAAGAAGTATACGCAATTATCAAAGTATGCTTACACTATAGTTGTAGATGAGGTTGATCGTTGCAAAATATTTGAGGAGGGGTTACGAAGAGATATTCGTACACTTTTGACTGCTAGTGTTGACTGGACAAAGTTTTCTAAACTAGTAGAAGCTGCTATAAGAGTAGAGAAGTGTTTAGCTAAGGAAAAACAGGAAAATGAGACGTTCAAAAGCGAACACACTACCCAACCATCAGGTGAATCGCAAGACCGTTCTAATAGAGCTGACAATAGGAGATTTGTGCCAGGAATGTCTGGTAAGGGGAGGTTTAAACCACGTTTCAGTGGATAG

mRNA sequence

ATGATTGTTGCTGAATATGAAAAGAAGTATACGCAATTATCAAAGTATGCTTACACTATAGTTGTAGATGAGGTTGATCGTTGCAAAATATTTGAGGAGGGGTTACGAAGAGATATTCGTACACTTTTGACTGCTAGTGTTGACTGGACAAAGTTTTCTAAACTAGTAGAAGCTGCTATAAGAGTAGAGAAGTGTTTAGCTAAGGAAAAACAGGAAAATGAGACGTTCAAAAGCGAACACACTACCCAACCATCAGGTGAATCGCAAGACCGTTCTAATAGAGCTGACAATAGGAGATTTGTGCCAGGAATGTCTGGTAAGGGGAGGTTTAAACCACGTTTCAGTGGATAG

Coding sequence (CDS)

ATGATTGTTGCTGAATATGAAAAGAAGTATACGCAATTATCAAAGTATGCTTACACTATAGTTGTAGATGAGGTTGATCGTTGCAAAATATTTGAGGAGGGGTTACGAAGAGATATTCGTACACTTTTGACTGCTAGTGTTGACTGGACAAAGTTTTCTAAACTAGTAGAAGCTGCTATAAGAGTAGAGAAGTGTTTAGCTAAGGAAAAACAGGAAAATGAGACGTTCAAAAGCGAACACACTACCCAACCATCAGGTGAATCGCAAGACCGTTCTAATAGAGCTGACAATAGGAGATTTGTGCCAGGAATGTCTGGTAAGGGGAGGTTTAAACCACGTTTCAGTGGATAG

Protein sequence

MIVAEYEKKYTQLSKYAYTIVVDEVDRCKIFEEGLRRDIRTLLTASVDWTKFSKLVEAAIRVEKCLAKEKQENETFKSEHTTQPSGESQDRSNRADNRRFVPGMSGKGRFKPRFSG
Homology
[Close]
BLAST of Cla001526 vs. TrEMBL
Match: A0A0A0KPI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G034500 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.4e-12
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1 

Query: 1  MIVAEYEKKYTQLSKYAYTIVVDEVDRCKIFEEGLRRDIRTLLTASVDWTKFSKLVEAAI 60
          M +AEYEKKY +L ++A +++ DE   CK  EEGLR +IRT +T    W  FSKLVEAAI
Sbjct: 1  MTIAEYEKKYKKLYEHATSVIEDEAKDCKRVEEGLREEIRTSVTPCAKWIDFSKLVEAAI 60

Query: 61 RVEKCLAKEKQENETFKS 79
          RV+  + + K E+E  K+
Sbjct: 61 RVQINVHERKLESEALKN 78

[Close]
BLAST of Cla001526 vs. TrEMBL
Match: A0A0A0KYX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G436990 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 33/87 (37.93%), Postives = 58/87 (66.67%), Query Frame = 1 

Query: 3   VAEYEKKYTQLSKYAYTIVVDEVDRCKIFEEGLRRDIRTLLTASVDWTKFSKLVEAAIRV 62
           V EYE+K+T+L+KYA  ++VDE +RC+     LR +IRT +   +  + +++LV+AA+RV
Sbjct: 15  VPEYERKFTKLAKYALILIVDEGERCRCSINDLREEIRTSIVLILIRSDYAQLVDAALRV 74

Query: 63  EKCLAKEKQENETF-KSEHTTQPSGES 89
           EK L  ++  +++  K E  +Q + +S
Sbjct: 75  EKSLGLKRSSSDSCEKGEEGSQKNKKS 101

[Close]
BLAST of Cla001526 vs. TrEMBL
Match: A0A0A0LR88_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G429045 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-06
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1 

Query: 1  MIVAEYEKKYTQLSKYAYTIVVDEVDRCKIFEEGLRRDIRT 42
          M V EYEKKYT+LSKYA +++ DE  RCK FEEGLR  IRT
Sbjct: 1  MTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIRT 41

[Close]
BLAST of Cla001526 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-28
Identity = 65/116 (56.03%), Postives = 85/116 (73.28%), Query Frame = 1 

Query: 1   MIVAEYEKKYTQLSKYAYTIVVDEVDRCKIFEEGLRRDIRTLLTASVDWTKFSKLVEAAI 60
           M +AEYEKKY +LSKYA +++ DE+DRCK FE+GLR +IRT +TAS +W +FSKLVE A+
Sbjct: 175 MTIAEYEKKYIKLSKYATSMIEDEIDRCKRFEDGLREEIRTPVTASSEWKEFSKLVETAV 234

Query: 61  RVEKCLAKEKQENETFKSEHTTQPSGESQDRSNRADNRRFVPGMSGKGRFKPRFSG 117
           RVEK LA+ K E E  ++  T    G S+D+SNR  NRRFV G++ +G FK R  G
Sbjct: 235 RVEKSLAERKNEKEVSRNVSTAITQGVSRDKSNRQGNRRFVQGVASRGNFKSRRRG 290

[Close]
BLAST of Cla001526 vs. NCBI nr
Match: gi|778697787|ref|XP_011654404.1| (PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 57/119 (47.90%), Postives = 76/119 (63.87%), Query Frame = 1 

Query: 1   MIVAEYEKKYTQLSKYAYTIVVDEVDRCKIFEEGLRRDIRTLLTASVDWTKFSKLVEAAI 60
           MIVAEYEKKYT+LSKYA +++ DE++RCK FEEGLR +IRTL+TA  DW  FSK +EAA+
Sbjct: 1   MIVAEYEKKYTKLSKYATSVIEDEIERCKQFEEGLREEIRTLVTACADWVDFSKSMEAAL 60

Query: 61  RVEKCLAKEKQENETFKSEHTTQPSGESQ----DRSNRADNRRFVPGMSGKGRFKPRFS 116
           RVEK + + K+E E  K+  T      S+    +  ++     F    SG G  +P  S
Sbjct: 61  RVEKSVYERKREREASKNVCTVYIKQSSKLLRGNLKSQYSGSSFSKSGSGGGTQRPSCS 119

[Close]
BLAST of Cla001526 vs. NCBI nr
Match: gi|659112465|ref|XP_008456237.1| (PREDICTED: uncharacterized protein LOC103496240 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 8.4e-17
Identity = 57/116 (49.14%), Postives = 71/116 (61.21%), Query Frame = 1 

Query: 3   VAEYEKKYTQLSKYAYTIVVDEVDRCKIFEEGLRRDIRTLLTASVDWTKFSKLVEAAIRV 62
           VAEYE+KYT+LS+YA  IV  E D C+ FE GLR +IRTL+TA   WT FS+LVE A+RV
Sbjct: 98  VAEYERKYTELSRYAEMIVASESDMCRRFERGLRFEIRTLVTAIAKWTNFSQLVETALRV 157

Query: 63  EKCLAKEKQENETFKSEHTTQPSGESQDRSNRADNRRFVPG--MSGKGRFKPRFSG 117
           E+ + +EK   E  +   TT  SG         + RRF PG  +SG   FK R  G
Sbjct: 158 EQSIVEEKSAMELSRGVSTT--SG-----IRGREQRRFTPGVNVSGCQDFKRRSGG 206

[Close]
BLAST of Cla001526 vs. NCBI nr
Match: gi|659133542|ref|XP_008466780.1| (PREDICTED: uncharacterized protein LOC103504112 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 4.2e-16
Identity = 55/118 (46.61%), Postives = 71/118 (60.17%), Query Frame = 1 

Query: 1   MIVAEYEKKYTQLSKYAYTIVVDEVDRCKIFEEGLRRDIRTLLTASVDWTKFSKLVEAAI 60
           ++V EYE KYT+LS+YA  IV  E DRC+ FE GLR ++RT +TA   WT FS+LVE A+
Sbjct: 76  LLVVEYEMKYTELSRYAEMIVASESDRCRRFERGLRFELRTPVTAIAKWTNFSQLVETAL 135

Query: 61  RVEKCLAKEKQENETFKSEHTTQPSGESQDRSNRADNRRFVPG--MSGKGRFKPRFSG 117
           RVE+ + +EK   E  +   TT  SG         + RRF PG  +SG   FK R  G
Sbjct: 136 RVEQSIVEEKSAMELSRGVSTT--SG-----IRGREQRRFTPGVNVSGCQDFKRRSGG 186

[Close]
BLAST of Cla001526 vs. NCBI nr
Match: gi|659118041|ref|XP_008458920.1| (PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 54/116 (46.55%), Postives = 69/116 (59.48%), Query Frame = 1 

Query: 3   VAEYEKKYTQLSKYAYTIVVDEVDRCKIFEEGLRRDIRTLLTASVDWTKFSKLVEAAIRV 62
           +AEYE+KYT+LS+YA  I+  E DRC  FE GLR +IRT +TA   WT FS+LVE A+RV
Sbjct: 73  MAEYERKYTELSRYAGMIMASESDRCHRFERGLRFEIRTPVTAIAKWTNFSQLVETALRV 132

Query: 63  EKCLAKEKQENETFKSEHTTQPSGESQDRSNRADNRRFVPG--MSGKGRFKPRFSG 117
           E+ + +EK   E  +   TT  SG         + RRF  G  +SG   FK R  G
Sbjct: 133 EQSIVEEKSAMELSRGVSTT--SG-----IRGPEQRRFTSGVNVSGCQDFKRRSGG 181

The following BLAST results are available for this feature:
BLAST of Cla001526 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPI9_CUCSA7.4e-1250.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G034500 PE=4 SV=1[more]
A0A0A0KYX4_CUCSA1.1e-0737.93Uncharacterized protein OS=Cucumis sativus GN=Csa_4G436990 PE=4 SV=1[more]
A0A0A0LR88_CUCSA2.1e-0668.29Uncharacterized protein OS=Cucumis sativus GN=Csa_2G429045 PE=4 SV=1[more]
BLAST of Cla001526 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116534|ref|XP_008458118.1|1.6e-2856.03PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|778697787|ref|XP_011654404.1|1.1e-1947.90PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus][more]
gi|659112465|ref|XP_008456237.1|8.4e-1749.14PREDICTED: uncharacterized protein LOC103496240 [Cucumis melo][more]
gi|659133542|ref|XP_008466780.1|4.2e-1646.61PREDICTED: uncharacterized protein LOC103504112 [Cucumis melo][more]
gi|659118041|ref|XP_008458920.1|1.3e-1446.55PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001526Cla001526.1mRNA