Cla001479 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001479
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Cohesin loading factor subunit SCC2 (AHRD V1 ***- A5HEI1_ARATH)
Location	Chr7 : 14873682 .. 14876729 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTGCCGCCGTTTGCTTCTGCCTCTGCCTCTGCCTCCGGCAACCGCGGCATCGGCTTGTCCAATACTATACACTCCGAGGTTGCTCCCTGCTTGCCTTTGCCATCGCTTCCAGTCTTCTTTGGCGCCTCCGAGCCTCAGCTCCGGCTCTTCGATGAGCCGGACGAGAGCTATGCTACTTCCACCGCTGATCTTCTCCCTCACTCTAGGAAGATCGCTGATCTGCTTCGTGCTACTGACGTGTCTTACTTGTGAGTTCCCGATTTTTTTTTCTCTATTTTGGAACTCAATTCTGGTAATTCTACTTTTGGAATTCTTCACTTCGGTTGACTGAATTTTGGTTCGGTCGTAGTGGTTTACCGATTTGGTGGTGTTACTGTTTCTGCCTTGACGGAAATGCCTTCAGGATTTCTTTTTTTTTTTTGAAATCTGTACTTTTTGACCGTTGATTGAGGATTATTCTATCTCGCGGTTATAATTCAGAATGCAACTAGTGTTTCGCTCTTGGAGTTCAAATTAGGCATTTTTTAAAGTTGGAACTACTGGATTAATACAAGTGGCAGCATTTATAGCCTTACAATTTTAAACGAGGTTGCTGCTTGAATTTTCATAGTCTACTAATTTTACTAAGTAGTAGTTGATTCTGCAGTAGAGTTGTAGGCCTGCCTTTCTTTATGTCATCTTTTAATTGTGGAAGCCTGTAGGCTACTAGGCGTCACAGCTAACTAATCTCGGGAGATTTACTCTTGCCTAGGCAGAATGCTCCTATTAAATGACTCGTGCATGCCATCGTGCTTGCTCTCCTTTGACCTCACCAAATTTAGTCATTGTAAACTACTGAATCATCAATAGGTATTTGATATTTGTTGATTAACTAGAGTTACATTACTGAAGTATGCTGTACATTGACTCCTTATTTGACTTAGTGATTCCTTGTTCCTAAGGCCTTTAGGTGGCTGTTTTCTTTTTTGGCTGTCTAATATAGTTGACAAATCAATTTCATGGATGAATTGTTTAGGTTTTGCTCGTGTTCTAGCCTCTAGGTGGTGTCATTCAAGTCTTTTGCTAATTATTCTATTCAAGACATTTACTTATATTCAAACGCTTTTCTTTTCTCTGTTTAAGTTTTGTATTGTTTCTATTATCTTTTTATTCCCCTATGTTTTTTCAGTTTCGTATATTTTTTAGCATTAGTCTCTTTTCATGAAAAGTAATGTTTCCTTAAAAAAAAATGATCTCACTTCCTATAAACTAAAAGAAAAAGTTACATGCTATAGATTTCTTGCCATGTCTTTACTTGATATTATAATTCACTTTAATGCAACCAACAGAAATCTCAGAGAAGATGCTAAGGTTCTTCAAGAAGGGTCTGTAGATTCTTTTGAACTCTATGAGGAGGTTCTTCGCCATGATGCTGACGCCTTCAATTATACTGCTCCAGGTAAATGGAGTCTTGAAATGTTTTTCTTCCTCATTTAATGGAAATATTAGTGAGTTACGTTAACTATATCTTGTCATATTTTGAAATCTAAATTGAGTGATACAAACCATCTCATTCCATTTCTCCAAAGTAATGAAAAAGTTTTTAAATCTCTTTTTCTGAGCAGATTTGGCATGATATTATCACTTTTTGTAATATATAAATAGCTCTATCAGTCGAGTTTATGCTTGTTGGGAGCCAGGAAGCATTGATACCATGTTTTGTGGAATATTTATGTTTGAGGTGGGACCTAGGAATTCCAAAATTTCAAAGATAAGTTATCTTTTTTTAATTGTTTTGTTTATTATTGTGCACCATTCTGCTTCTTGGTCCTGATCCAGCTCTAGAAATATTCTTCATAACTATAGTCTTTGATGTGATGTTTAAATGATTGGAAGGCTCTTCTTTGTAGGGGGTTCTCTCTACCTGGCTCCTAGACTGACCTTGGTATTTATTTGGAATACATTCATCTTTTTTTTTTTTTTCCCCAAAAAAAGGTTTGAGGTGTACAAGGAATTCATAAGCTTCAGATCCAACAAATTCACTCTGTTTCTTAAATAAAAAAAATTACTATTTATTTCTGCATATGGTCTTGCAGGGGTGCATTTTAAGGGGCGTAAAATTGTAAAAATATAATACATTTAGGGGAAAAAGGTCATGATTAACTATGAAAATAGGAAAGTAAGAATGAAAATCATTTTAATGCTATGTTGTTTAGAAATATGCATTTTGTTCCATTATTTTTATATGTACCTTTTTGTTTGATTTTATTTTACTTGGATGACTTGTATTCCTGAAGTCAATCATTTATTTTTGAACTTACTGTCTATTGTGCTGTTCAAGTTTCTCAGGTCCTATTATGGAGCATGTCTCCAGCAGTATGGTATCTGATAGAAAAGTTTTTGAGCAAAGACTACCTATTAGAAGTCAAGTTGAAGGAGACTCTAGAACAACTCAAAATCATAAGCCTGAACCTATGCCTACTAATGTATGCAAGCATTAGGGTTTCCAGTCTCTTTATTTGTTACTTGTTATTTGCTAACCCTGGGAATAATAATTTACAGGATACACCAATGTCATCTTCTAGAAAAGTAAAAGTTAAGAAGAAAGGCAGAGATGAAATTTCTTTTGTTAGAACAGATTCTTCTGAGCCTCAAGGTTGTTCTACACGTTCCTTGAGCTAATATATGAAAAGCTGCACTGTATTTCACCTCACAAGTTTTGTTTTCATTTTTCATGGACTAAATATTACTTCGAATATTGTAGACACAACCCTTGCAAACTTTTGCGAGTTCTTAGAGGACTTTTGTGGCAGAGCTGAAATTGCTGGCGATGATTGTGATGAGTCAGAGTGGCTGGCTCTGCCTCTTACTGATCTAAGAGGGATTGTCAACGAAATAATGTCCATACGTTCAAAGAAACTTCTTCATTTGGTTCCTCTCGATAACCTGACGAGGCTGTTGAAGGTTTTAGATAATCAGATACATAGAGCAGAAGGATTGTCTGTTGAAGAATGTGAACATGTGAGTCTGCTAATTTTGTTTTATGGTTTTTCACTGTTCTAG

mRNA sequence

ATGAGTTTGCCGCCGTTTGCTTCTGCCTCTGCCTCTGCCTCCGGCAACCGCGGCATCGGCTTGTCCAATACTATACACTCCGAGGTTGCTCCCTGCTTGCCTTTGCCATCGCTTCCAGTCTTCTTTGGCGCCTCCGAGCCTCAGCTCCGGCTCTTCGATGAGCCGGACGAGAGCTATGCTACTTCCACCGCTGATCTTCTCCCTCACTCTAGGAAGATCGCTGATCTGCTTCGTGCTACTGACGTGTCTTACTTAAATCTCAGAGAAGATGCTAAGGTTCTTCAAGAAGGGTCTGTAGATTCTTTTGAACTCTATGAGGAGGTTCTTCGCCATGATGCTGACGCCTTCAATTATACTGCTCCAGGTCCTATTATGGAGCATGTCTCCAGCAGTATGGTATCTGATAGAAAAGTTTTTGAGCAAAGACTACCTATTAGAAGTCAAGTTGAAGGAGACTCTAGAACAACTCAAAATCATAAGCCTGAACCTATGCCTACTAATGATACACCAATGTCATCTTCTAGAAAAGTAAAAGTTAAGAAGAAAGGCAGAGATGAAATTTCTTTTGTTAGAACAGATTCTTCTGAGCCTCAAGACACAACCCTTGCAAACTTTTGCGAGTTCTTAGAGGACTTTTGTGGCAGAGCTGAAATTGCTGGCGATGATTGTGATGAGTCAGAGTGGCTGGCTCTGCCTCTTACTGATCTAAGAGGGATTGTCAACGAAATAATGTCCATACGTTCAAAGAAACTTCTTCATTTGGTTCCTCTCGATAACCTGACGAGGCTGTTGAAGGTTTTAGATAATCAGATACATAGAGCAGAAGGATTGTCTGTTGAAGAATGTGAACATGTGAGTCTGCTAATTTTGTTTTATGGTTTTTCACTGTTCTAG

Coding sequence (CDS)

ATGAGTTTGCCGCCGTTTGCTTCTGCCTCTGCCTCTGCCTCCGGCAACCGCGGCATCGGCTTGTCCAATACTATACACTCCGAGGTTGCTCCCTGCTTGCCTTTGCCATCGCTTCCAGTCTTCTTTGGCGCCTCCGAGCCTCAGCTCCGGCTCTTCGATGAGCCGGACGAGAGCTATGCTACTTCCACCGCTGATCTTCTCCCTCACTCTAGGAAGATCGCTGATCTGCTTCGTGCTACTGACGTGTCTTACTTAAATCTCAGAGAAGATGCTAAGGTTCTTCAAGAAGGGTCTGTAGATTCTTTTGAACTCTATGAGGAGGTTCTTCGCCATGATGCTGACGCCTTCAATTATACTGCTCCAGGTCCTATTATGGAGCATGTCTCCAGCAGTATGGTATCTGATAGAAAAGTTTTTGAGCAAAGACTACCTATTAGAAGTCAAGTTGAAGGAGACTCTAGAACAACTCAAAATCATAAGCCTGAACCTATGCCTACTAATGATACACCAATGTCATCTTCTAGAAAAGTAAAAGTTAAGAAGAAAGGCAGAGATGAAATTTCTTTTGTTAGAACAGATTCTTCTGAGCCTCAAGACACAACCCTTGCAAACTTTTGCGAGTTCTTAGAGGACTTTTGTGGCAGAGCTGAAATTGCTGGCGATGATTGTGATGAGTCAGAGTGGCTGGCTCTGCCTCTTACTGATCTAAGAGGGATTGTCAACGAAATAATGTCCATACGTTCAAAGAAACTTCTTCATTTGGTTCCTCTCGATAACCTGACGAGGCTGTTGAAGGTTTTAGATAATCAGATACATAGAGCAGAAGGATTGTCTGTTGAAGAATGTGAACATGTGAGTCTGCTAATTTTGTTTTATGGTTTTTCACTGTTCTAG

Protein sequence

MSLPPFASASASASGNRGIGLSNTIHSEVAPCLPLPSLPVFFGASEPQLRLFDEPDESYATSTADLLPHSRKIADLLRATDVSYLNLREDAKVLQEGSVDSFELYEEVLRHDADAFNYTAPGPIMEHVSSSMVSDRKVFEQRLPIRSQVEGDSRTTQNHKPEPMPTNDTPMSSSRKVKVKKKGRDEISFVRTDSSEPQDTTLANFCEFLEDFCGRAEIAGDDCDESEWLALPLTDLRGIVNEIMSIRSKKLLHLVPLDNLTRLLKVLDNQIHRAEGLSVEECEHVSLLILFYGFSLF

Homology

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BLAST of Cla001479 vs. TrEMBL
Match: A0A0A0KVP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G092970 PE=4 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 5.9e-130
Identity = 245/289 (84.78%), Postives = 257/289 (88.93%), Query Frame = 1


Query: 1   MSLPPFASASASAS--GNRGIGLSNTIHSEVAPCLPLPSLPVFFGASEPQLRLFDEPDES 60
           MSLP  ASAS+SAS   NRGIGLSNTIHSEVAPCLPLPSLPVFFGAS+P LRL D PD +
Sbjct: 1   MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDAT 60

Query: 61  YATSTADLLPHSRKIADLLRATDVSYLNLREDAKVLQEGSVDSFELYEEVLRHDADAFNY 120
           YATST+DLLPHSRKIADLL ATDVSYLNLREDAKVLQEG V+ FELYEEVLRHD DAF+Y
Sbjct: 61  YATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGPVEPFELYEEVLRHDGDAFSY 120

Query: 121 TAPGPIMEHVSSSMVSDRKVFEQRLPIRSQVEGDSRTTQNHK--PEPMPTNDTPMSSSRK 180
           TAPGPIM+HVSSS   DRKVFEQRLPIR+QVEGDSRTTQ+HK  PE MPTNDT +SSSRK
Sbjct: 121 TAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRK 180

Query: 181 VKVKKKGRDEISFVRTDSSEPQDTTLANFCEFLEDFCGRAEIAGDDCDESEWLALPLTDL 240
           VK KKKGRDE S  RTDSSE QD TLAN CEFLEDFCGRAEI  DD DESEWLALPLTDL
Sbjct: 181 VKTKKKGRDETSSGRTDSSELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDL 240

Query: 241 RGIVNEIMSIRSKKLLHLVPLDNLTRLLKVLDNQIHRAEGLSVEECEHV 286
           R +VNEIMSIRSKKLLHLVPLD LTRLLKVLDNQIHRAEGLSVEECEH+
Sbjct: 241 RMLVNEIMSIRSKKLLHLVPLDMLTRLLKVLDNQIHRAEGLSVEECEHI 289

[Close]

BLAST of Cla001479 vs. TrEMBL
Match: W9QQY4_9ROSA (Nipped-B-like protein OS=Morus notabilis GN=L484_021011 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 9.9e-77
Identity = 158/292 (54.11%), Postives = 204/292 (69.86%), Query Frame = 1


Query: 1   MSLPPFASASASASG-----NRGIGLSNTIHSEVAPCLPLPSLPVFFGASEPQLRLFDEP 60
           MS     + S+S SG     +RGIGLSNTIHSEVA CLPLPSLPVF GAS+P+LRLFD+ 
Sbjct: 1   MSYHQDPTGSSSGSGPALWNHRGIGLSNTIHSEVASCLPLPSLPVFCGASDPELRLFDDS 60

Query: 61  DESYATSTA--DLLPHSRKIADLLRATDVSYLNLREDAKVLQEGSVDSFELYEEVLRHDA 120
             +Y  S    ++L  S +IADLLR TDVSYLNLRE  + +  G ++  +L++EVLR ++
Sbjct: 61  SRNYLWSLNRNEILNQSGRIADLLRQTDVSYLNLREAPQEVSYGYLEPLDLHDEVLRFNS 120

Query: 121 DAFNYTAPGPIMEHVSSSMVSDRKVFEQRLPIRSQVEGDSRTTQNHKPEPMPTNDTPMSS 180
           +AFN   PG I E +S   V ++K FE  +PI S    D   T NH    +P NDT  SS
Sbjct: 121 EAFNVNGPGHIKEQISVGTVPEKKPFEPSIPITSHSHKDYGATHNHHFNNVPANDTSTSS 180

Query: 181 SRKVKVKKKGRDEISF-VRTDSSEPQDTTLANFCEFLEDFCGRAEIAGDDCDESEWLALP 240
           SRK + KKK  D IS  V  D +E QD  + +FCE +E+FC RAEI  DD DE+EWL++P
Sbjct: 181 SRKSRAKKKVSDNISTAVLPDPTELQDAAIESFCELVENFCSRAEIDNDDRDEAEWLSIP 240

Query: 241 LTDLRGIVNEIMSIRSKKLLHLVPLDNLTRLLKVLDNQIHRAEGLSVEECEH 285
           L+DLR +VNEI+SIR+K+LLHL+P+D L R+L+VLD+QIHRAEGLS+ +CEH
Sbjct: 241 LSDLRILVNEIISIRAKRLLHLLPVDILVRVLRVLDHQIHRAEGLSINDCEH 292

[Close]

BLAST of Cla001479 vs. TrEMBL
Match: V7BZI6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G035100g PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.3e-73
Identity = 152/286 (53.15%), Postives = 197/286 (68.88%), Query Frame = 1


Query: 1   MSLPPFASASASASGNRGIGLSNTIHSEVAPCLPLPSLPVFFGASEPQLRLFDEPDESYA 60
           MS P  + A A  SG+ GIGLSNT+HSE+A CLPLPSLPVF GAS+  LRL D P     
Sbjct: 1   MSFPATSGAGAPFSGSSGIGLSNTVHSELAACLPLPSLPVFCGASDQDLRLVDSPAR--- 60

Query: 61  TSTADLLPHSRKIADLLRATDVSYLNLREDAKVLQEGSVDSFELYEEVLRHDADAFNYTA 120
            S  D+L  S KIA+LLR TDVSYLNLR++AK +    V+  EL++EVLR + +AF Y+ 
Sbjct: 61  LSRVDVLAQSGKIAELLRHTDVSYLNLRDEAKGVPYIYVEPLELHDEVLRCNPEAFEYST 120

Query: 121 PGPIMEHVSSSMVSDRKVFEQRLPIRSQVEGDSRTTQNHKPEPMPTNDTPMSSSRKVKVK 180
            GP+ E +S S + +++  E    I SQ + D   T + + +   TND    S +K KVK
Sbjct: 121 AGPVKEQISGSALPEKRQSESSFSIPSQTQKDYNATHSRQLDNFSTNDISTLSFKKSKVK 180

Query: 181 KKGRDEISFVRTDSSEPQDTTLANFCEFLEDFCGRAEIAGDDCDESEWLALPLTDLRGIV 240
           KKG D IS +  DS+E Q   +  FC+FLED C ++E+  DD DE+EWL+LPL+DLR +V
Sbjct: 181 KKGGDGIS-IAPDSAELQGAHIQRFCDFLEDLCNKSELNSDDRDEAEWLSLPLSDLRLLV 240

Query: 241 NEIMSIRSKKLLHLVPLDNLTRLLKVLDNQIHRAEGLSVEECEHVS 287
           NEI SIR KKLLHLVP++ L RLLKVL++QIHRAEGLS+EEC++ S
Sbjct: 241 NEITSIREKKLLHLVPIEVLVRLLKVLNHQIHRAEGLSIEECDNSS 282

[Close]

BLAST of Cla001479 vs. TrEMBL
Match: V7C1Y0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G035100g PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.3e-73
Identity = 152/286 (53.15%), Postives = 197/286 (68.88%), Query Frame = 1


Query: 1   MSLPPFASASASASGNRGIGLSNTIHSEVAPCLPLPSLPVFFGASEPQLRLFDEPDESYA 60
           MS P  + A A  SG+ GIGLSNT+HSE+A CLPLPSLPVF GAS+  LRL D P     
Sbjct: 1   MSFPATSGAGAPFSGSSGIGLSNTVHSELAACLPLPSLPVFCGASDQDLRLVDSPAR--- 60

Query: 61  TSTADLLPHSRKIADLLRATDVSYLNLREDAKVLQEGSVDSFELYEEVLRHDADAFNYTA 120
            S  D+L  S KIA+LLR TDVSYLNLR++AK +    V+  EL++EVLR + +AF Y+ 
Sbjct: 61  LSRVDVLAQSGKIAELLRHTDVSYLNLRDEAKGVPYIYVEPLELHDEVLRCNPEAFEYST 120

Query: 121 PGPIMEHVSSSMVSDRKVFEQRLPIRSQVEGDSRTTQNHKPEPMPTNDTPMSSSRKVKVK 180
            GP+ E +S S + +++  E    I SQ + D   T + + +   TND    S +K KVK
Sbjct: 121 AGPVKEQISGSALPEKRQSESSFSIPSQTQKDYNATHSRQLDNFSTNDISTLSFKKSKVK 180

Query: 181 KKGRDEISFVRTDSSEPQDTTLANFCEFLEDFCGRAEIAGDDCDESEWLALPLTDLRGIV 240
           KKG D IS +  DS+E Q   +  FC+FLED C ++E+  DD DE+EWL+LPL+DLR +V
Sbjct: 181 KKGGDGIS-IAPDSAELQGAHIQRFCDFLEDLCNKSELNSDDRDEAEWLSLPLSDLRLLV 240

Query: 241 NEIMSIRSKKLLHLVPLDNLTRLLKVLDNQIHRAEGLSVEECEHVS 287
           NEI SIR KKLLHLVP++ L RLLKVL++QIHRAEGLS+EEC++ S
Sbjct: 241 NEITSIREKKLLHLVPIEVLVRLLKVLNHQIHRAEGLSIEECDNSS 282

[Close]

BLAST of Cla001479 vs. TrEMBL
Match: K7LXL8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G057300 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 3.9e-73
Identity = 155/287 (54.01%), Postives = 198/287 (68.99%), Query Frame = 1


Query: 1   MSLPPFASASASA---SGNRGIGLSNTIHSEVAPCLPLPSLPVFFGASEPQLRLFDEPDE 60
           MS P  + ASA+A   SG+RGIGLSNT+HSE+A CLPLPSLPVF GAS+  LRL D P  
Sbjct: 1   MSFPATSGASAAALSSSGHRGIGLSNTVHSELAACLPLPSLPVFCGASDQDLRLVDSPAR 60

Query: 61  SYATSTADLLPHSRKIADLLRATDVSYLNLREDAKVLQEGSVDSFELYEEVLRHDADAFN 120
               +  D+L  S KIA+LLR TDVSYLNLR +AK +    V+  EL++EV+R + +AF 
Sbjct: 61  ---LNRVDVLAQSAKIAELLRHTDVSYLNLRGEAKGVPYIYVEPLELHDEVIRCNPEAFE 120

Query: 121 YTAPGPIMEHVSSSMVSDRKVFEQRLPIRSQVEGDSRTTQNHKPEPMPTNDTPMSSSRKV 180
           Y+  GP+ E +  S VS+++  E   PI+ + + D   T + + +   TND    SS+K 
Sbjct: 121 YSTAGPVKEQIYGSAVSEKRKPESSFPIQRETQKDYNATHSRQLDNFSTNDISSLSSKKS 180

Query: 181 KVKKKGRDEISFVRTDSSEPQDTTLANFCEFLEDFCGRAEIAGDDCDESEWLALPLTDLR 240
           K+KKKG D IS V  DS+E Q   +  F EFLED C ++E   DD DE+EWL LPLTDLR
Sbjct: 181 KIKKKGGDGIS-VAPDSAELQGAYIERFREFLEDLCNKSEFNSDDRDEAEWLPLPLTDLR 240

Query: 241 GIVNEIMSIRSKKLLHLVPLDNLTRLLKVLDNQIHRAEGLSVEECEH 285
            +VNEI SIR KKLLHLVP++ L RLLKVLD+QIHRAEGLS+EEC++
Sbjct: 241 LLVNEITSIREKKLLHLVPVEVLVRLLKVLDHQIHRAEGLSIEECDN 283

[Close]

BLAST of Cla001479 vs. NCBI nr
Match: gi|700198475|gb|KGN53633.1| (hypothetical protein Csa_4G092970 [Cucumis sativus])

HSP 1 Score: 471.9 bits (1213), Expect = 8.5e-130
Identity = 245/289 (84.78%), Postives = 257/289 (88.93%), Query Frame = 1


Query: 1   MSLPPFASASASAS--GNRGIGLSNTIHSEVAPCLPLPSLPVFFGASEPQLRLFDEPDES 60
           MSLP  ASAS+SAS   NRGIGLSNTIHSEVAPCLPLPSLPVFFGAS+P LRL D PD +
Sbjct: 1   MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDAT 60

Query: 61  YATSTADLLPHSRKIADLLRATDVSYLNLREDAKVLQEGSVDSFELYEEVLRHDADAFNY 120
           YATST+DLLPHSRKIADLL ATDVSYLNLREDAKVLQEG V+ FELYEEVLRHD DAF+Y
Sbjct: 61  YATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGPVEPFELYEEVLRHDGDAFSY 120

Query: 121 TAPGPIMEHVSSSMVSDRKVFEQRLPIRSQVEGDSRTTQNHK--PEPMPTNDTPMSSSRK 180
           TAPGPIM+HVSSS   DRKVFEQRLPIR+QVEGDSRTTQ+HK  PE MPTNDT +SSSRK
Sbjct: 121 TAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRK 180

Query: 181 VKVKKKGRDEISFVRTDSSEPQDTTLANFCEFLEDFCGRAEIAGDDCDESEWLALPLTDL 240
           VK KKKGRDE S  RTDSSE QD TLAN CEFLEDFCGRAEI  DD DESEWLALPLTDL
Sbjct: 181 VKTKKKGRDETSSGRTDSSELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDL 240

Query: 241 RGIVNEIMSIRSKKLLHLVPLDNLTRLLKVLDNQIHRAEGLSVEECEHV 286
           R +VNEIMSIRSKKLLHLVPLD LTRLLKVLDNQIHRAEGLSVEECEH+
Sbjct: 241 RMLVNEIMSIRSKKLLHLVPLDMLTRLLKVLDNQIHRAEGLSVEECEHI 289

[Close]

BLAST of Cla001479 vs. NCBI nr
Match: gi|778691738|ref|XP_011653342.1| (PREDICTED: nipped-B-like protein isoform X2 [Cucumis sativus])

HSP 1 Score: 470.7 bits (1210), Expect = 1.9e-129
Identity = 245/288 (85.07%), Postives = 256/288 (88.89%), Query Frame = 1


Query: 1   MSLPPFASASASAS--GNRGIGLSNTIHSEVAPCLPLPSLPVFFGASEPQLRLFDEPDES 60
           MSLP  ASAS+SAS   NRGIGLSNTIHSEVAPCLPLPSLPVFFGAS+P LRL D PD +
Sbjct: 1   MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDAT 60

Query: 61  YATSTADLLPHSRKIADLLRATDVSYLNLREDAKVLQEGSVDSFELYEEVLRHDADAFNY 120
           YATST+DLLPHSRKIADLL ATDVSYLNLREDAKVLQEG V+ FELYEEVLRHD DAF+Y
Sbjct: 61  YATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGPVEPFELYEEVLRHDGDAFSY 120

Query: 121 TAPGPIMEHVSSSMVSDRKVFEQRLPIRSQVEGDSRTTQNHK--PEPMPTNDTPMSSSRK 180
           TAPGPIM+HVSSS   DRKVFEQRLPIR+QVEGDSRTTQ+HK  PE MPTNDT +SSSRK
Sbjct: 121 TAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRK 180

Query: 181 VKVKKKGRDEISFVRTDSSEPQDTTLANFCEFLEDFCGRAEIAGDDCDESEWLALPLTDL 240
           VK KKKGRDE S  RTDSSE QD TLAN CEFLEDFCGRAEI  DD DESEWLALPLTDL
Sbjct: 181 VKTKKKGRDETSSGRTDSSELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDL 240

Query: 241 RGIVNEIMSIRSKKLLHLVPLDNLTRLLKVLDNQIHRAEGLSVEECEH 285
           R +VNEIMSIRSKKLLHLVPLD LTRLLKVLDNQIHRAEGLSVEECEH
Sbjct: 241 RMLVNEIMSIRSKKLLHLVPLDMLTRLLKVLDNQIHRAEGLSVEECEH 288

[Close]

BLAST of Cla001479 vs. NCBI nr
Match: gi|778691735|ref|XP_011653341.1| (PREDICTED: nipped-B-like protein isoform X1 [Cucumis sativus])

HSP 1 Score: 470.7 bits (1210), Expect = 1.9e-129
Identity = 245/288 (85.07%), Postives = 256/288 (88.89%), Query Frame = 1


Query: 1   MSLPPFASASASAS--GNRGIGLSNTIHSEVAPCLPLPSLPVFFGASEPQLRLFDEPDES 60
           MSLP  ASAS+SAS   NRGIGLSNTIHSEVAPCLPLPSLPVFFGAS+P LRL D PD +
Sbjct: 1   MSLPLSASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLSDHPDAT 60

Query: 61  YATSTADLLPHSRKIADLLRATDVSYLNLREDAKVLQEGSVDSFELYEEVLRHDADAFNY 120
           YATST+DLLPHSRKIADLL ATDVSYLNLREDAKVLQEG V+ FELYEEVLRHD DAF+Y
Sbjct: 61  YATSTSDLLPHSRKIADLLLATDVSYLNLREDAKVLQEGPVEPFELYEEVLRHDGDAFSY 120

Query: 121 TAPGPIMEHVSSSMVSDRKVFEQRLPIRSQVEGDSRTTQNHK--PEPMPTNDTPMSSSRK 180
           TAPGPIM+HVSSS   DRKVFEQRLPIR+QVEGDSRTTQ+HK  PE MPTNDT +SSSRK
Sbjct: 121 TAPGPIMDHVSSSTAPDRKVFEQRLPIRNQVEGDSRTTQSHKTEPETMPTNDTQISSSRK 180

Query: 181 VKVKKKGRDEISFVRTDSSEPQDTTLANFCEFLEDFCGRAEIAGDDCDESEWLALPLTDL 240
           VK KKKGRDE S  RTDSSE QD TLAN CEFLEDFCGRAEI  DD DESEWLALPLTDL
Sbjct: 181 VKTKKKGRDETSSGRTDSSELQDNTLANTCEFLEDFCGRAEIVDDDRDESEWLALPLTDL 240

Query: 241 RGIVNEIMSIRSKKLLHLVPLDNLTRLLKVLDNQIHRAEGLSVEECEH 285
           R +VNEIMSIRSKKLLHLVPLD LTRLLKVLDNQIHRAEGLSVEECEH
Sbjct: 241 RMLVNEIMSIRSKKLLHLVPLDMLTRLLKVLDNQIHRAEGLSVEECEH 288

[Close]

BLAST of Cla001479 vs. NCBI nr
Match: gi|659101556|ref|XP_008451669.1| (PREDICTED: nipped-B-like protein isoform X2 [Cucumis melo])

HSP 1 Score: 467.6 bits (1202), Expect = 1.6e-128
Identity = 246/290 (84.83%), Postives = 257/290 (88.62%), Query Frame = 1


Query: 1   MSLPP--FASASASAS--GNRGIGLSNTIHSEVAPCLPLPSLPVFFGASEPQLRLFDEPD 60
           MSLPP  FASAS+SAS   NRGIGLSNTIHSEVAPCLPLPSLPVFFGAS+P LRLFD PD
Sbjct: 1   MSLPPSAFASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLFDHPD 60

Query: 61  ESYATSTADLLPHSRKIADLLRATDVSYLNLREDAKVLQEGSVDSFELYEEVLRHDADAF 120
            +YATSTADLLPHS+KIADLL ATDVSYLNLREDA+VLQEGSV+ FELYEEVLRHD DAF
Sbjct: 61  ATYATSTADLLPHSKKIADLLLATDVSYLNLREDAQVLQEGSVEPFELYEEVLRHDGDAF 120

Query: 121 NYTAPGPIMEHVSSSMVSDRKVFEQRLPIRSQVEGDSRTTQNHK--PEPMPTNDTPMSSS 180
           +YTAPGPIMEHVSSS V DRKVFEQRL IR+QVEGDSRTTQ+ K  PE MPTNDTP+SSS
Sbjct: 121 SYTAPGPIMEHVSSSTVPDRKVFEQRLHIRNQVEGDSRTTQSQKMEPETMPTNDTPISSS 180

Query: 181 RKVKVKKKGRDEISFVRTDSSEPQDTTLANFCEFLEDFCGRAEIAGDDCDESEWLALPLT 240
           RKVK KKK RDE S  RT SSE QD TLA  CEFLEDFCGRAEI  DD DESEWLALPLT
Sbjct: 181 RKVKTKKKVRDETSSGRTGSSELQDNTLAKSCEFLEDFCGRAEIVDDDRDESEWLALPLT 240

Query: 241 DLRGIVNEIMSIRSKKLLHLVPLDNLTRLLKVLDNQIHRAEGLSVEECEH 285
           DLR +VNEIMSIRSKKLLHLVPLD LTRLLKVLDNQIHRAEGLSVEECEH
Sbjct: 241 DLRMLVNEIMSIRSKKLLHLVPLDKLTRLLKVLDNQIHRAEGLSVEECEH 290

[Close]

BLAST of Cla001479 vs. NCBI nr
Match: gi|659101554|ref|XP_008451668.1| (PREDICTED: nipped-B-like protein isoform X1 [Cucumis melo])

HSP 1 Score: 467.6 bits (1202), Expect = 1.6e-128
Identity = 246/290 (84.83%), Postives = 257/290 (88.62%), Query Frame = 1


Query: 1   MSLPP--FASASASAS--GNRGIGLSNTIHSEVAPCLPLPSLPVFFGASEPQLRLFDEPD 60
           MSLPP  FASAS+SAS   NRGIGLSNTIHSEVAPCLPLPSLPVFFGAS+P LRLFD PD
Sbjct: 1   MSLPPSAFASASSSASTSSNRGIGLSNTIHSEVAPCLPLPSLPVFFGASDPHLRLFDHPD 60

Query: 61  ESYATSTADLLPHSRKIADLLRATDVSYLNLREDAKVLQEGSVDSFELYEEVLRHDADAF 120
            +YATSTADLLPHS+KIADLL ATDVSYLNLREDA+VLQEGSV+ FELYEEVLRHD DAF
Sbjct: 61  ATYATSTADLLPHSKKIADLLLATDVSYLNLREDAQVLQEGSVEPFELYEEVLRHDGDAF 120

Query: 121 NYTAPGPIMEHVSSSMVSDRKVFEQRLPIRSQVEGDSRTTQNHK--PEPMPTNDTPMSSS 180
           +YTAPGPIMEHVSSS V DRKVFEQRL IR+QVEGDSRTTQ+ K  PE MPTNDTP+SSS
Sbjct: 121 SYTAPGPIMEHVSSSTVPDRKVFEQRLHIRNQVEGDSRTTQSQKMEPETMPTNDTPISSS 180

Query: 181 RKVKVKKKGRDEISFVRTDSSEPQDTTLANFCEFLEDFCGRAEIAGDDCDESEWLALPLT 240
           RKVK KKK RDE S  RT SSE QD TLA  CEFLEDFCGRAEI  DD DESEWLALPLT
Sbjct: 181 RKVKTKKKVRDETSSGRTGSSELQDNTLAKSCEFLEDFCGRAEIVDDDRDESEWLALPLT 240

Query: 241 DLRGIVNEIMSIRSKKLLHLVPLDNLTRLLKVLDNQIHRAEGLSVEECEH 285
           DLR +VNEIMSIRSKKLLHLVPLD LTRLLKVLDNQIHRAEGLSVEECEH
Sbjct: 241 DLRMLVNEIMSIRSKKLLHLVPLDKLTRLLKVLDNQIHRAEGLSVEECEH 290

The following BLAST results are available for this feature:

BLAST of Cla001479 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVP6_CUCSA	5.9e-130	84.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G092970 PE=4 SV=1	[more]
W9QQY4_9ROSA	9.9e-77	54.11	Nipped-B-like protein OS=Morus notabilis GN=L484_021011 PE=4 SV=1	[more]
V7BZI6_PHAVU	2.3e-73	53.15	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G035100g PE=4 SV=1	[more]
V7C1Y0_PHAVU	2.3e-73	53.15	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G035100g PE=4 SV=1	[more]
K7LXL8_SOYBN	3.9e-73	54.01	Uncharacterized protein OS=Glycine max GN=GLYMA_13G057300 PE=4 SV=1	[more]

BLAST of Cla001479 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198475\|gb\|KGN53633.1\|	8.5e-130	84.78	hypothetical protein Csa_4G092970 [Cucumis sativus]	[more]
gi\|778691738\|ref\|XP_011653342.1\|	1.9e-129	85.07	PREDICTED: nipped-B-like protein isoform X2 [Cucumis sativus]	[more]
gi\|778691735\|ref\|XP_011653341.1\|	1.9e-129	85.07	PREDICTED: nipped-B-like protein isoform X1 [Cucumis sativus]	[more]
gi\|659101556\|ref\|XP_008451669.1\|	1.6e-128	84.83	PREDICTED: nipped-B-like protein isoform X2 [Cucumis melo]	[more]
gi\|659101554\|ref\|XP_008451668.1\|	1.6e-128	84.83	PREDICTED: nipped-B-like protein isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051276	chromosome organization
biological_process	GO:0044699	single-organism process
biological_process	GO:0007064	mitotic sister chromatid cohesion
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003682	chromatin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001479	Cla001479.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 257..277 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001479	ClCG07G007370	Watermelon (Charleston Gray)	wcgwmB370
Cla001479	CSPI04G08500	Wild cucumber (PI 183967)	cpiwmB323

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001479	Watermelon (97103) v2	wmwmbB171