Cla001470 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001470
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ribosomal protein (AHRD V1 **** B3TLQ8_ELAGV); contains Interpro domain(s) IPR002143 Ribosomal protein L1
Location	Chr7 : 14536951 .. 14537499 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAACTTCAGAGCGATGCTTTGAGAGAAGCTATTTCATCTATCTTCGCTGATACAAGTGAAAAGAAGCGCAACTTTACTGAGACCATTGAACTTCAGATTGGACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGATCAGTGAAATTGCCCCATATTCCTCGCCCTAAGATGAAGATTTGCATGCTTGGAGATGCCTCTCATGTTGAAGAGGCAGAGAACGGTTTGGATTATATGGACGTTGAAGGTTTGAAGAAGCTAAACAAAAACTAGAAGTTAATGAAGAAACTTGCCAAGAAGTATCATGCCTTTTTAGCATCTGAAGCTATTATTAAGCAAATTCCCCGTCTTCTGGGCCCTGGGCTCAACAAAGGGCCCAACAAGGCAGGAAAGTTCCCTACCCTGGTCACTCACCAAGAATCTCTCGAATCTAAAGTAAATGAGACTAAGTCAATGGTTAAGTCCCAATTGAAGAAGGTTCTTTGTATGGGTGTGGCCATAGGCAATGTTGCCATGGAAGAGAAACAAGTTTTCTAG

mRNA sequence

ATGAGCAAACTTCAGAGCGATGCTTTGAGAGAAGCTATTTCATCTATCTTCGCTGATACAAGTGAAAAGAAGCGCAACTTTACTGAGACCATTGAACTTCAGATTGGACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGATCAGTGAAATTGCCCCATATTCCTCGCCCTAAGATGAAGATTTGCATGCTTGGAGATGCCTCTCATGTTGAAGAGGCAGAGAACGGTTTGGATTATATGGACGTTGAAGCATCTGAAGCTATTATTAAGCAAATTCCCCGTCTTCTGGGCCCTGGGCTCAACAAAGGGCCCAACAAGGCAGGAAAGTTCCCTACCCTGGTCACTCACCAAGAATCTCTCGAATCTAAAGTAAATGAGACTAAGTCAATGGTTAAGTCCCAATTGAAGAAGGTTCTTTGTATGGGTGTGGCCATAGGCAATGTTGCCATGGAAGAGAAACAAGTTTTCTAG

Coding sequence (CDS)

ATGAGCAAACTTCAGAGCGATGCTTTGAGAGAAGCTATTTCATCTATCTTCGCTGATACAAGTGAAAAGAAGCGCAACTTTACTGAGACCATTGAACTTCAGATTGGACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGATCAGTGAAATTGCCCCATATTCCTCGCCCTAAGATGAAGATTTGCATGCTTGGAGATGCCTCTCATGTTGAAGAGGCAGAGAACGGTTTGGATTATATGGACGTTGAAGCATCTGAAGCTATTATTAAGCAAATTCCCCGTCTTCTGGGCCCTGGGCTCAACAAAGGGCCCAACAAGGCAGGAAAGTTCCCTACCCTGGTCACTCACCAAGAATCTCTCGAATCTAAAGTAAATGAGACTAAGTCAATGGTTAAGTCCCAATTGAAGAAGGTTCTTTGTATGGGTGTGGCCATAGGCAATGTTGCCATGGAAGAGAAACAAGTTTTCTAG

Protein sequence

MSKLQSDALREAISSIFADTSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDASHVEEAENGLDYMDVEASEAIIKQIPRLLGPGLNKGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGVAIGNVAMEEKQVF

Homology

[Close]

BLAST of Cla001470 vs. Swiss-Prot
Match: R10A_ORYSI (60S ribosomal protein L10a OS=Oryza sativa subsp. indica GN=RPL10A PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.3e-64
Identity = 131/182 (71.98%), Postives = 142/182 (78.02%), Query Frame = 1


Query: 1   MSKLQSDALREAISSIFADTSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQS+ L+EAIS +  ++ EK R FTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEN-GLDYMDVE-----------------------ASEAIIKQIP 120
           KMK+CMLGDA HVEEAE  GLDYMDVE                       ASEAIIKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 RLLGPGLNKGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGVAIGNVAMEEK 159
           RLLGPGL    NKAGKFPTLVTHQESLESKVNETK+ VK QLKKVLCMGVA+GN++MEEK
Sbjct: 121 RLLGPGL----NKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEK 178

[Close]

BLAST of Cla001470 vs. Swiss-Prot
Match: R10A_ORYSJ (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica GN=RPL10A PE=1 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.3e-64
Identity = 131/182 (71.98%), Postives = 142/182 (78.02%), Query Frame = 1


Query: 1   MSKLQSDALREAISSIFADTSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQS+ L+EAIS +  ++ EK R FTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEN-GLDYMDVE-----------------------ASEAIIKQIP 120
           KMK+CMLGDA HVEEAE  GLDYMDVE                       ASEAIIKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 RLLGPGLNKGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGVAIGNVAMEEK 159
           RLLGPGL    NKAGKFPTLVTHQESLESKVNETK+ VK QLKKVLCMGVA+GN++MEEK
Sbjct: 121 RLLGPGL----NKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEK 178

[Close]

BLAST of Cla001470 vs. Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.2e-63
Identity = 130/183 (71.04%), Postives = 142/183 (77.60%), Query Frame = 1


Query: 1   MSKLQSDALREAISSIFADTSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQS+A+REAI++I   +  KKRNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEN-GLDYMDVE-----------------------ASEAIIKQIP 120
           KMKICMLGDA HVEEAE  GL+ MDVE                       ASE++IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 121 RLLGPGLNKGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGVAIGNVAMEEK 160
           RLLGPGL    NKAGKFPTLV+HQESLESKVNETK+ VK QLKKVLCMGVA+GN++MEEK
Sbjct: 121 RLLGPGL----NKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEK 179

[Close]

BLAST of Cla001470 vs. Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=1 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-62
Identity = 132/184 (71.74%), Postives = 142/184 (77.17%), Query Frame = 1


Query: 1   MSKLQSDALREAISSIFADTSEKK-RNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
           MSKLQS+A+REAISSI     E K RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 61  PKMKICMLGDASHVEEAEN-GLDYMDVE-----------------------ASEAIIKQI 120
           PKMKICMLGDA HVEEAE  GL+ MDVE                       ASE++IKQI
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 121 PRLLGPGLNKGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGVAIGNVAMEE 160
           PRLLGPGL    NKAGKFPTLV+HQESLESKVNETK+ VK QLKKVLCMGVA+GN++MEE
Sbjct: 121 PRLLGPGL----NKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEE 180

[Close]

BLAST of Cla001470 vs. Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-62
Identity = 129/183 (70.49%), Postives = 142/183 (77.60%), Query Frame = 1


Query: 1   MSKLQSDALREAISSIFADTSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQS+A+REAI++I   + EKKRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEN-GLDYMDVE-----------------------ASEAIIKQIP 120
           KMKICMLGDA HVEEAE  GL  MDVE                       ASE++IKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120

Query: 121 RLLGPGLNKGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGVAIGNVAMEEK 160
           RLLGPGL    NKAGKFPTLV+HQESLE+KVNETK+ VK QLKKVLCMGVA+GN++MEEK
Sbjct: 121 RLLGPGL----NKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEK 179

[Close]

BLAST of Cla001470 vs. TrEMBL
Match: A0A0A0KEW8_CUCSA (Ribosomal protein OS=Cucumis sativus GN=Csa_6G152330 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.4e-69
Identity = 147/183 (80.33%), Postives = 151/183 (82.51%), Query Frame = 1


Query: 1   MSKLQSDALREAISSIFADTSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAISSIFAD+ EKKR FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEN-GLDYMDVE-----------------------ASEAIIKQIP 120
           KMKICMLGDASHVEEAE  GLDYMDVE                       ASEAIIKQIP
Sbjct: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 RLLGPGLNKGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGVAIGNVAMEEK 160
           RLLGPGL    NKAGKFPTLVTHQESLESKVNETK+MVK QLKKVLCMGVA+GN+AMEEK
Sbjct: 121 RLLGPGL----NKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNIAMEEK 179

[Close]

BLAST of Cla001470 vs. TrEMBL
Match: A0A0A0LVE6_CUCSA (Ribosomal protein OS=Cucumis sativus GN=Csa_1G163140 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.8e-67
Identity = 141/183 (77.05%), Postives = 151/183 (82.51%), Query Frame = 1


Query: 1   MSKLQSDALREAISSIFADTSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAISSIF D++EKKR FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEN-GLDYMDVE-----------------------ASEAIIKQIP 120
           KMKICMLGDASH+EEAE  GL+YMDVE                       ASE+IIKQIP
Sbjct: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120

Query: 121 RLLGPGLNKGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGVAIGNVAMEEK 160
           RLLGPGL    NKAGKFPTLVTHQE+LESKVNETK+MVK QLKKVLCMGVA+GNV+M+EK
Sbjct: 121 RLLGPGL----NKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEK 179

[Close]

BLAST of Cla001470 vs. TrEMBL
Match: A0A061GZQ4_THECC (Ribosomal protein OS=Theobroma cacao GN=TCM_041412 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.9e-66
Identity = 142/183 (77.60%), Postives = 147/183 (80.33%), Query Frame = 1


Query: 1   MSKLQSDALREAISSIFADTSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAIS+I A + EK R FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISTIVAQSKEKNRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEN-GLDYMDVE-----------------------ASEAIIKQIP 120
           KMKICMLGDA HVEEAE  GLDYMDVE                       ASEAIIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYQAFLASEAIIKQIP 120

Query: 121 RLLGPGLNKGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGVAIGNVAMEEK 160
           RLLGPGL    NKAGKFPTLVTHQESLESKVNETK+MVK QLKKVLCMGVA+GNVAMEEK
Sbjct: 121 RLLGPGL----NKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEK 179

[Close]

BLAST of Cla001470 vs. TrEMBL
Match: A0A059D9G4_EUCGR (Ribosomal protein OS=Eucalyptus grandis GN=EUGRSUZ_B03850 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.5e-66
Identity = 141/183 (77.05%), Postives = 148/183 (80.87%), Query Frame = 1


Query: 1   MSKLQSDALREAISSIFADTSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAIS IF+D +EKKR FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISGIFSDCNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEN-GLDYMDVE-----------------------ASEAIIKQIP 120
           KMK+CMLGDA HVEEAE  GL YMDVE                       ASEA+IKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLAYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 RLLGPGLNKGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGVAIGNVAMEEK 160
           RLLGPGL    NKAGKFPTLVTHQESLESKVNETK+MVK QLKKVLCMGVAIGN++MEEK
Sbjct: 121 RLLGPGL----NKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAIGNLSMEEK 179

[Close]

BLAST of Cla001470 vs. TrEMBL
Match: B3TLQ8_ELAGV (Ribosomal protein OS=Elaeis guineensis var. tenera PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.2e-66
Identity = 141/183 (77.05%), Postives = 146/183 (79.78%), Query Frame = 1


Query: 1   MSKLQSDALREAISSIFADTSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSD LREAIS I  D+ EKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDVLREAISQITNDSREKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEN-GLDYMDVE-----------------------ASEAIIKQIP 120
           KMK+CMLGDA HVEEAE  GLDYMDVE                       ASEAIIKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 RLLGPGLNKGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGVAIGNVAMEEK 160
           RLLGPGL    NKAGKFPTLVTHQESLESKVNETK+MVK QLKKVLCMGVA+GN AMEEK
Sbjct: 121 RLLGPGL----NKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNCAMEEK 179

[Close]

BLAST of Cla001470 vs. NCBI nr
Match: gi|659117410|ref|XP_008458587.1| (PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis melo])

HSP 1 Score: 269.6 bits (688), Expect = 3.4e-69
Identity = 147/183 (80.33%), Postives = 151/183 (82.51%), Query Frame = 1


Query: 1   MSKLQSDALREAISSIFADTSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAISSIFAD+ EKKR FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEN-GLDYMDVE-----------------------ASEAIIKQIP 120
           KMKICMLGDASHVEEAE  GLDYMDVE                       ASEAIIKQIP
Sbjct: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 RLLGPGLNKGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGVAIGNVAMEEK 160
           RLLGPGL    NKAGKFPTLVTHQESLESKVNETK+MVK QLKKVLCMGVA+GN+AMEEK
Sbjct: 121 RLLGPGL----NKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNIAMEEK 179

[Close]

BLAST of Cla001470 vs. NCBI nr
Match: gi|449443440|ref|XP_004139485.1| (PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus])

HSP 1 Score: 262.3 bits (669), Expect = 5.5e-67
Identity = 141/183 (77.05%), Postives = 151/183 (82.51%), Query Frame = 1


Query: 1   MSKLQSDALREAISSIFADTSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAISSIF D++EKKR FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEN-GLDYMDVE-----------------------ASEAIIKQIP 120
           KMKICMLGDASH+EEAE  GL+YMDVE                       ASE+IIKQIP
Sbjct: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120

Query: 121 RLLGPGLNKGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGVAIGNVAMEEK 160
           RLLGPGL    NKAGKFPTLVTHQE+LESKVNETK+MVK QLKKVLCMGVA+GNV+M+EK
Sbjct: 121 RLLGPGL----NKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEK 179

[Close]

BLAST of Cla001470 vs. NCBI nr
Match: gi|743845923|ref|XP_010938704.1| (PREDICTED: 60S ribosomal protein L10a-1-like [Elaeis guineensis])

HSP 1 Score: 261.2 bits (666), Expect = 1.2e-66
Identity = 142/183 (77.60%), Postives = 146/183 (79.78%), Query Frame = 1


Query: 1   MSKLQSDALREAISSIFADTSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSD LREAIS I  DT EKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDVLREAISQIMNDTKEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEN-GLDYMDVE-----------------------ASEAIIKQIP 120
           KMK+CMLGDA HVEEAE  GLDYMDVE                       ASEAIIKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 121 RLLGPGLNKGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGVAIGNVAMEEK 160
           RLLGPGL    NKAGKFPTLVTHQESLE+KVNETK+MVK QLKKVLCMGVA+GN AMEEK
Sbjct: 121 RLLGPGL----NKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNCAMEEK 179

[Close]

BLAST of Cla001470 vs. NCBI nr
Match: gi|720071396|ref|XP_010278051.1| (PREDICTED: 60S ribosomal protein L10a-1-like [Nelumbo nucifera])

HSP 1 Score: 260.4 bits (664), Expect = 2.1e-66
Identity = 141/183 (77.05%), Postives = 147/183 (80.33%), Query Frame = 1


Query: 1   MSKLQSDALREAISSIFADTSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAIS I +DT EKKRNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISGIMSDTKEKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEN-GLDYMDVE-----------------------ASEAIIKQIP 120
           KMKICMLGDA HVEEAE  GL+YMDVE                       ASEAIIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKRYHAFLASEAIIKQIP 120

Query: 121 RLLGPGLNKGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGVAIGNVAMEEK 160
           RLLGPGL    NKAGKFPTLVTHQESLESKVNETK+MVK QLKKVLCMGVA+GN +MEEK
Sbjct: 121 RLLGPGL----NKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNCSMEEK 179

[Close]

BLAST of Cla001470 vs. NCBI nr
Match: gi|1009113322|ref|XP_015872872.1| (PREDICTED: 60S ribosomal protein L10a [Ziziphus jujuba])

HSP 1 Score: 260.4 bits (664), Expect = 2.1e-66
Identity = 139/183 (75.96%), Postives = 149/183 (81.42%), Query Frame = 1


Query: 1   MSKLQSDALREAISSIFADTSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
           MSKLQSDALREAIS+I  ++ EKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISTIVTESKEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDASHVEEAEN-GLDYMDVE-----------------------ASEAIIKQIP 120
           KMK+CMLGDA HVEEAE  GLDYMDVE                       ASEA+IKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVESLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 121 RLLGPGLNKGPNKAGKFPTLVTHQESLESKVNETKSMVKSQLKKVLCMGVAIGNVAMEEK 160
           RLLGPGL    NKAGKFPTLVTHQESLESKVNETK+MVK QLKKVLCMGVA+GN++MEEK
Sbjct: 121 RLLGPGL----NKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNLSMEEK 179

The following BLAST results are available for this feature:

BLAST of Cla001470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R10A_ORYSI	3.3e-64	71.98	60S ribosomal protein L10a OS=Oryza sativa subsp. indica GN=RPL10A PE=3 SV=1	[more]
R10A_ORYSJ	3.3e-64	71.98	60S ribosomal protein L10a OS=Oryza sativa subsp. japonica GN=RPL10A PE=1 SV=1	[more]
R10A1_ARATH	8.2e-63	71.04	60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1	[more]
R10A3_ARATH	1.4e-62	71.74	60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=1 SV=1	[more]
R10A2_ARATH	1.8e-62	70.49	60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1	[more]

BLAST of Cla001470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEW8_CUCSA	2.4e-69	80.33	Ribosomal protein OS=Cucumis sativus GN=Csa_6G152330 PE=3 SV=1	[more]
A0A0A0LVE6_CUCSA	3.8e-67	77.05	Ribosomal protein OS=Cucumis sativus GN=Csa_1G163140 PE=3 SV=1	[more]
A0A061GZQ4_THECC	1.9e-66	77.60	Ribosomal protein OS=Theobroma cacao GN=TCM_041412 PE=3 SV=1	[more]
A0A059D9G4_EUCGR	2.5e-66	77.05	Ribosomal protein OS=Eucalyptus grandis GN=EUGRSUZ_B03850 PE=3 SV=1	[more]
B3TLQ8_ELAGV	3.2e-66	77.05	Ribosomal protein OS=Elaeis guineensis var. tenera PE=2 SV=1	[more]

BLAST of Cla001470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117410\|ref\|XP_008458587.1\|	3.4e-69	80.33	PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis melo]	[more]
gi\|449443440\|ref\|XP_004139485.1\|	5.5e-67	77.05	PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus]	[more]
gi\|743845923\|ref\|XP_010938704.1\|	1.2e-66	77.60	PREDICTED: 60S ribosomal protein L10a-1-like [Elaeis guineensis]	[more]
gi\|720071396\|ref\|XP_010278051.1\|	2.1e-66	77.05	PREDICTED: 60S ribosomal protein L10a-1-like [Nelumbo nucifera]	[more]
gi\|1009113322\|ref\|XP_015872872.1\|	2.1e-66	75.96	PREDICTED: 60S ribosomal protein L10a [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016094	Ribosomal protein L1, 2-layer alpha/beta-sandwich
IPR016095	Ribosomal_L1_3-a/b-sand
IPR023674	Ribosomal_L1-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0008150	biological_process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008184	glycogen phosphorylase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU08861	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001470	Cla001470.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU08861	WMU08861	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016094	Ribosomal protein L1, 2-layer alpha/beta-sandwich	GENE3D	G3DSA:3.30.190.20		coord: 132..158 score: 1.3E-27coord: 6..60 score: 1.3
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	G3DSA:3.40.50.790		coord: 87..131 score: 5.0
IPR023674	Ribosomal protein L1-like	unknown	SSF56808	Ribosomal protein L1	coord: 1..158 score: 5.36
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 1..159 score: 9.7E
None	No IPR available	PANTHER	PTHR23105:SF55	SUBFAMILY NOT NAMED	coord: 1..159 score: 9.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001470	ClCG07G007320	Watermelon (Charleston Gray)	wcgwmB370

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001470	Watermelon (97103) v2	wmwmbB171