Cla001454 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001454
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Acetyl-CoA carboxylase biotin carboxylase (AHRD V1 ***- B4VQU4_9CYAN); contains Interpro domain(s) IPR005481 Carbamoyl phosphate synthase, large subunit, N-terminal
Location	Chr4 : 11838455 .. 11842256 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCCGCAATGCCTCTCTGCAAATCTGCTCGCGCTCCCTCTCTCACTGTCAGTTTCTTTGTCCTTCATCTCCCAATCTTGATTTCCACTCTGATCTGCACTTCCATTCGCTTCATTCTCCGCATTTATTTGTACATTTCACATGAATTTATCTCACTAGAGTTGTTTTTCATTGAAGGGTTTATTTGCTGGGACTACTAATGGATTGAGGAGCTCTCAATGTACCTTCATGGGTGCAAAGAAAGTCAGTTTTCCTAGACAGAGAGCTACTGGAGTGCAATATAGTCGTAAATCGTGGAAGAATGGGAGAGGTCTTCAAGTTATGTGCCGTGCGGATAAAATTTTGGTGGCTAATAGAGGAGAAATTGCGGTTCGTATTATAAGAACTGCTCATGAATTGGGAATTCCTTGTGTGGCTGTGTACTCAACCATTGACAAGGACGCACTCCACGTAAAATTGGCTGATGAATCTGTGTGCATTGGTGAAGCACCAAGCAGCCAATCGTAAGGCACCCGAATTGATCTTATTTTTATTCGTACTCTAAAGTCTAAAGCTGTCTCAGTCGTATTTTATGTTCATTATCACTCTTCTGCAGGCACCTATTCTTCCCCTTATACCTCTAATACTTAGTATCAGAACCATCCCTTTACATCTTATTTATGTTTCATCTTTTCTTCTGATACTGCGAGAGTGAATTCACACTATGGAGAATGACAAGCAACAATTGCGTAGGTCCATATAATATTCAACTTGATTGAGGATTACGACTACCAGGAGGTTTATTTCATTTTTCTCAGATGTAACTGATTAATCTCCGTTAGAACTGTGGTCTTTGTCTGATCAAGAGATTTTGTTGGGTTGTTGGTGGATAAACAACTCTGTTGGGCTCCCCAGTCTCCGTTTCAGTCTCCTTGTTACGTTTTTTCTTTCCTTCAAAATAAAGATGTACAGTTATTTCATTTGGGAGTCATCTATATTAGAAGGATATCATTTAATATTCTTCATTTTGAATTGTCATCTCTTTCATTTGACCCTTGACCTTTGTTATCTGAAATCCATTTTTAGTAACTCACTGAAAGTTCCATTAGCCATTTGAATTTTTGCTCTCTAGCAGCTTGAACTTGGCCCCTTAAAATTGGGAAGAAGTTGATTACAGGTTGTGTCTTACGTATGCAGGCAGGGGAGGACCAATCACATTTATTCTTCCTTTGTCTTATAGCAGGAATTGTCGGGAGGGAGGTTTTCTGGAAACAAAGGATAAAGAAAGGCATAAGAACAAAGAAAACAAAAGGAATTGTTGGGAGTACTTCCTAATCAGCCTTGGCTGCTTTTGGGCATTTGGCAAAGATCTTAAATACAACATTCTCCAATTGTCTTATGATCATAATTTTTTTTTTGTTTTTCTTCCCTTACAGAGCGAACAGAACTTTTAATTGATATTTGAAAAGCTAGATTCATTAGAGAGGGCATACTGGGAAGTCACATAATGTCTGACTGACTAGTTCCAGCTTTTCCTCCTTATCCACTATGGATCTTCTTTCAAGCCTGTCACACTAAATAATTGGAAGATTACTCTTGCAGCCGAGTCAAATATATAAGAGCATCCAAAACCTTGAAACATGGAATCCCAACATTTCTGCCAAAGGAACAATGGAGAAGATATGAGAAGGTCCTCCCTGATTTTAAACAAAATAGCAGTTTGGGCTGATTACCAAATAAAGACACCTTTTCTCTAAAGTTTGTTGGCTGTAGTTATATGTAACAGAGTATCCAGGACAAAATGTTCAAATTCCTTAATAAACTTTTCCTGATCATTGAGTGTGGGATTTGAAATGTTCACCCCAAAAGTTATGGCGTTTGTTTTTTTTGGTTGCCTGCTTTCAACACTCAATATGGTATGTGTATGTGGCTTTGTGAAGGGATGAAGGATTCAATTCCGGAATAGAAGCACGTTTGAATACAATAATTTGAAGTACCTTTTGTTCTACCTGTAGAGGGATGAGCAATACTGTTAAGCAATTCTTTGGTCTTGGGCTTTTGCTCAAGAGGGAGTCTGAGTCTTATGACTTGCTTGGATATTTGATTGTATGTTTTCTTGTTCTTCTAGCTACAATTTTTATTTATTTATTTTATTTATTATTATTATTTTTAATTCCTGTCCTATCTAATTGCTATTTGATCCTGGAAATGGATTTTGAGTAGAGTAGAGGATCATATTGTTGGAAAAGCTAGAAACATTGAAGAAAATGAAGAAAGGGATGACATTGATAAAATTAAACATAGATGAGATGAAATTGAAGCAAGAATCTCAGTTGACGGTGCTAAAAGGCAAGCTGTATCAGAGGAGTGACATTGAAAAATTGCACAGGATATGGTACAACAAGAGGGACATAAGCTGATCAGATTGATATATAATCTAAGTGAGAGAACTGAAAATTCATGACCAGGAGCTATTAAGTGCAAATTAACCATGAATGGAATGAGAAATTTCAAAATTAGACAGAAGAGAATAGTGTCTATACCGTCTAGAGAAAAAAAATGATAGTGAGCAAATGCAAACTTAGCTTTCATACCCAAGCTATACAAATCCAACTTTGAACTAAATGCCCACTTTTTGAGGTTTCAGTTGGAGCTCATGCTTGGGCGTTGATCTTAAGGAATTATAAATGCGATGAAGTTAACATGACCTGGGCATTCTTGATTTTGCAAGTTGCCTAGCTTCTGGATAGAATTTTTGCTTGTCTAAAGTCTTAATAAAATCCATCTCCTTCCATGAATGCATTTGGAAAGTTTTTCTATGATGTCCTTGATTTGTAGTTTTGAAAGGACGTCCCATACTCATCTCTCCAATTGTTTTAGATATTTCATGTTTTCATAGATGAAAAGGATGTCTATATTCATCTTTCCTAATTTTTAGACATTTCATGTCTTCATAGATATTGCTTCTTGCCCAGAAATTTGTTATTTGTTTTCACATAACTAGTTCTTCTTTTGGATCTATACTGTGTATGATAATAATGAATGTGCTTCAACAGGTACTTAGTGATCCCAAATGTCCTCTCTGCTGCCATCAGTCGGGGATGTACAATGCTGCATCCTGGATATGGCTTCCTTGCTGAGAATGCAGTATTTGTTGAAATGTGCAGAGAACATGGAATCAATTTTATTGGACCTAATGTAAGCACTTTAAAGTTTTCTAGCTACTGTAACTCATGTGGAAGTTCAATTTGAAGCTACCTCTATCTTCTATACGTTTTGTGGGGGAAACTATGAAATTCTTGATGGCTTGTGCAGCCTGACAGCATCCGAGTTATGGGTGACAAATCAACTGCCAGAGATACTATGAAAAAAGCAGGTGTACCAACTGTTCCAGGAAGTGATGGTCTTTTACAGGTATACCGACAGTCAGTAGGCATTATGCTATGTGCTCGCTTTACTACGACTCAATAGAGTAAATTTATTATTTGTTTTTTTATTTCATACATTTAATTTGTTGTGGATATCTCATATTCCAGAGCACCGAAGAAGCAATCAAACTTGCACAGGAAATTGGCTATCCTGTTATGATCAAGGTATAGTGATTAAATTGTAAAGATTTTGTTTAAAGAACGATAGGAATGAATATTAAATATATAAGTTCTAGCTGGAATAGACAGCTTTTCTCATAAGGTTTCCATTCTATCTGGAATTATATGAAAACTGGAGATGTTCAAAGGTTTGTTGTGTCAGCATGGTGGTTGTTCTGATGTGGGTACCTTGCGTCTGATATCGTTTCCAGCCTTGGATTGGGTGCATTAG

mRNA sequence

ATGGACGCCGCAATGCCTCTCTGCAAATCTGCTCGCGCTCCCTCTCTCACTGGTTTATTTGCTGGGACTACTAATGGATTGAGGAGCTCTCAATGTACCTTCATGGGTGCAAAGAAAGTCAGTTTTCCTAGACAGAGAGCTACTGGAGTGCAATATAGTCGTAAATCGTGGAAGAATGGGAGAGGTCTTCAAGTTATGTGCCGTGCGGATAAAATTTTGGTGGCTAATAGAGGAGAAATTGCGGTTCGTATTATAAGAACTGCTCATGAATTGGGAATTCCTTGTGTGGCTGTGTACTCAACCATTGACAAGGACGCACTCCACGTAAAATTGGCTGATGAATCTGTGTGCATTGGTGAAGCACCAAGCAGCCAATCGTACTTAGTGATCCCAAATGTCCTCTCTGCTGCCATCAGTCGGGGATGTACAATGCTGCATCCTGGATATGGCTTCCTTGCTGAGAATGCAGTATTTGTTGAAATGTGCAGAGAACATGGAATCAATTTTATTGGACCTAATCCTGACAGCATCCGAGTTATGGGTGACAAATCAACTGCCAGAGATACTATGAAAAAAGCAGGTGTACCAACTGTTCCAGGAAGTGATGGTCTTTTACAGAGCACCGAAGAAGCAATCAAACTTGCACAGGAAATTGGCTATCCTGTTATGATCAAGCATGGTGGTTGTTCTGATGTGGGTACCTTGCGTCTGATATCGTTTCCAGCCTTGGATTGGGTGCATTAG

Coding sequence (CDS)

ATGGACGCCGCAATGCCTCTCTGCAAATCTGCTCGCGCTCCCTCTCTCACTGGTTTATTTGCTGGGACTACTAATGGATTGAGGAGCTCTCAATGTACCTTCATGGGTGCAAAGAAAGTCAGTTTTCCTAGACAGAGAGCTACTGGAGTGCAATATAGTCGTAAATCGTGGAAGAATGGGAGAGGTCTTCAAGTTATGTGCCGTGCGGATAAAATTTTGGTGGCTAATAGAGGAGAAATTGCGGTTCGTATTATAAGAACTGCTCATGAATTGGGAATTCCTTGTGTGGCTGTGTACTCAACCATTGACAAGGACGCACTCCACGTAAAATTGGCTGATGAATCTGTGTGCATTGGTGAAGCACCAAGCAGCCAATCGTACTTAGTGATCCCAAATGTCCTCTCTGCTGCCATCAGTCGGGGATGTACAATGCTGCATCCTGGATATGGCTTCCTTGCTGAGAATGCAGTATTTGTTGAAATGTGCAGAGAACATGGAATCAATTTTATTGGACCTAATCCTGACAGCATCCGAGTTATGGGTGACAAATCAACTGCCAGAGATACTATGAAAAAAGCAGGTGTACCAACTGTTCCAGGAAGTGATGGTCTTTTACAGAGCACCGAAGAAGCAATCAAACTTGCACAGGAAATTGGCTATCCTGTTATGATCAAGCATGGTGGTTGTTCTGATGTGGGTACCTTGCGTCTGATATCGTTTCCAGCCTTGGATTGGGTGCATTAG

Protein sequence

MDAAMPLCKSARAPSLTGLFAGTTNGLRSSQCTFMGAKKVSFPRQRATGVQYSRKSWKNGRGLQVMCRADKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIKHGGCSDVGTLRLISFPALDWVH

Homology

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BLAST of Cla001454 vs. Swiss-Prot
Match: ACCC1_POPTR (Biotin carboxylase 1, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_831870 PE=2 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 4.2e-98
Identity = 183/225 (81.33%), Postives = 194/225 (86.22%), Query Frame = 1


Query: 1   MDAAMPLCKSARAPSLTGLFAGTTNGLRSSQCTFMGAKKVSFPRQRATGVQYSRKSWKNG 60
           M+A +P+CKS    S  GLF G T+G+RSSQC+FM   KV+FPRQRA          KNG
Sbjct: 1   MEATLPVCKSVT--STPGLFMGKTSGIRSSQCSFMMGNKVNFPRQRAQTAHVHCA--KNG 60

Query: 61  RGLQVMCRADKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE 120
             L V CRA+KILVANRGEIAVR+IRTAHE+GIPCVAVYSTIDKDALHVKLADESVCIGE
Sbjct: 61  GALGVTCRAEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGE 120

Query: 121 APSSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM 180
           APSSQSYLVIPNVLSAAISR CTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM
Sbjct: 121 APSSQSYLVIPNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM 180

Query: 181 GDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK 226
           GDKSTAR+TMKKAGVPTVPGSDGLLQSTEE ++LA EIGYPVMIK
Sbjct: 181 GDKSTARETMKKAGVPTVPGSDGLLQSTEEGVRLANEIGYPVMIK 221

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BLAST of Cla001454 vs. Swiss-Prot
Match: ACCC2_POPTR (Biotin carboxylase 2, chloroplastic OS=Populus trichocarpa GN=POPTR_0018s14250g PE=2 SV=2)

HSP 1 Score: 358.6 bits (919), Expect = 5.4e-98
Identity = 181/225 (80.44%), Postives = 194/225 (86.22%), Query Frame = 1


Query: 1   MDAAMPLCKSARAPSLTGLFAGTTNGLRSSQCTFMGAKKVSFPRQRATGVQYSRKSWKNG 60
           M+A +P+CKS    S  GLF    +G+R+SQC+FM   KV+FPRQR    Q +  + KNG
Sbjct: 1   MEATLPVCKSVT--STPGLFMKRNSGIRNSQCSFMVGTKVNFPRQRTQATQANHCAKKNG 60

Query: 61  RGLQVMCRADKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE 120
             L V CRA+KILVANRGEIAVR+IRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE
Sbjct: 61  GALGVTCRAEKILVANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE 120

Query: 121 APSSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM 180
           APS+QSYLVI NVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM
Sbjct: 121 APSNQSYLVIQNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM 180

Query: 181 GDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK 226
           GDKSTAR+TMKKA VPTVPGSDGLLQSTEEA+KLA EIGYPVMIK
Sbjct: 181 GDKSTARETMKKANVPTVPGSDGLLQSTEEAVKLASEIGYPVMIK 223

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BLAST of Cla001454 vs. Swiss-Prot
Match: ACCC_ARATH (Biotin carboxylase, chloroplastic OS=Arabidopsis thaliana GN=CAC2 PE=1 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 4.3e-87
Identity = 169/231 (73.16%), Postives = 188/231 (81.39%), Query Frame = 1


Query: 1   MDAAMPLCKSARAPSLTGLFAGTTNG---LRSSQCTFMGAKKVSFPRQRATGVQYSRKSW 60
           MDA+M +  S    S   L  G + G   +RSS C  M   KV+FPRQR   ++ S+K  
Sbjct: 1   MDASM-ITNSKSITSPPSLALGKSGGGGVIRSSLCNLMMPSKVNFPRQRTQTLKVSQKKL 60

Query: 61  KNGR--GLQVMCRA-DKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADE 120
           K     GL V C   DKILVANRGEIAVR+IRTAHE+GIPCVAVYSTIDKDALHVKLADE
Sbjct: 61  KRATSGGLGVTCSGGDKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE 120

Query: 121 SVCIGEAPSSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNP 180
           +VCIGEAPS+QSYLVIPNVLSAAISRGCTMLHPGYGFL+ENA+FVEMCR+HGINFIGPNP
Sbjct: 121 AVCIGEAPSNQSYLVIPNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGPNP 180

Query: 181 DSIRVMGDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK 226
           DSIRVMGDK+TAR+TMK AGVPTVPGSDGLLQSTEEA+++A EIG+PVMIK
Sbjct: 181 DSIRVMGDKATARETMKNAGVPTVPGSDGLLQSTEEAVRVANEIGFPVMIK 230

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BLAST of Cla001454 vs. Swiss-Prot
Match: ACCC_NOSS1 (Biotin carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accC PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.4e-56
Identity = 102/172 (59.30%), Postives = 140/172 (81.40%), Query Frame = 1


Query: 70  DKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLV 129
           DKIL+ANRGEIA+RI+R   E+GI  +AV+ST+D++ALHV+LADE+VCIGE  S++SYL 
Sbjct: 4   DKILIANRGEIALRILRACEEMGIATIAVHSTVDRNALHVQLADEAVCIGEPASAKSYLN 63

Query: 130 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARDT 189
           IPN+++AA++R  + +HPGYGFL+ENA F E+C +H I FIGP P++IR+MGDKSTA++T
Sbjct: 64  IPNIIAAALTRNASAIHPGYGFLSENAKFAEICADHHIAFIGPTPEAIRLMGDKSTAKET 123

Query: 190 MKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIKHGGCSDVGTLRLISFP 242
           M+KAGVPTVPGS+GL+++ +E ++LA++IGYPVMIK         +RL+  P
Sbjct: 124 MQKAGVPTVPGSEGLVETEQEGLELAKDIGYPVMIKATAGGGGRGMRLVRSP 175

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BLAST of Cla001454 vs. Swiss-Prot
Match: ACCC_PSEAE (Biotin carboxylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=accC PE=1 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 6.1e-49
Identity = 95/160 (59.38%), Postives = 120/160 (75.00%), Query Frame = 1


Query: 70  DKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLV 129
           +K+L+ANRGEIA+RI+R   ELGI  VAV+ST D++ +H+ LADESVCIG AP++QSYL 
Sbjct: 3   EKVLIANRGEIALRILRACKELGIKTVAVHSTADRELMHLSLADESVCIGPAPATQSYLQ 62

Query: 130 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARDT 189
           IP +++AA   G T +HPGYGFLAENA F E     G  F+GP  + IR+MGDK +A+D 
Sbjct: 63  IPAIIAAAEVTGATAIHPGYGFLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSAKDA 122

Query: 190 MKKAGVPTVPGSDGLLQSTEE-AIKLAQEIGYPVMIKHGG 229
           MK+AGVPTVPGSDG L   EE A+ +A+E+GYPV+IK  G
Sbjct: 123 MKRAGVPTVPGSDGPLPEDEETALAIAREVGYPVIIKAAG 162

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BLAST of Cla001454 vs. TrEMBL
Match: A0A0A0KYI1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G438530 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 1.1e-113
Identity = 205/225 (91.11%), Postives = 218/225 (96.89%), Query Frame = 1


Query: 1   MDAAMPLCKSARAPSLTGLFAGTTNGLRSSQCTFMGAKKVSFPRQRATGVQYSRKSWKNG 60
           MDAAMPLCKSARAPSLTGLFAGTTN  RSSQCTFMGA K+SFP QRA+G++Y+RKS KNG
Sbjct: 1   MDAAMPLCKSARAPSLTGLFAGTTNRFRSSQCTFMGANKLSFPSQRASGIKYTRKSLKNG 60

Query: 61  RGLQVMCRADKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE 120
           +GLQV+CRA+KILV+NRGEIAVRIIRTAHELGIPCVAVYST+DKDALHVKLADESVCIGE
Sbjct: 61  KGLQVVCRAEKILVSNRGEIAVRIIRTAHELGIPCVAVYSTVDKDALHVKLADESVCIGE 120

Query: 121 APSSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM 180
           APSS SYL+IPNVLSAA+SRGCTMLHPGYGFLAENA FV+MCREHGINFIGPNPDSIRVM
Sbjct: 121 APSSLSYLLIPNVLSAAVSRGCTMLHPGYGFLAENASFVQMCREHGINFIGPNPDSIRVM 180

Query: 181 GDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK 226
           GDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK
Sbjct: 181 GDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK 225

[Close]

BLAST of Cla001454 vs. TrEMBL
Match: W9RVM8_9ROSA (Biotin carboxylase 1 OS=Morus notabilis GN=L484_008219 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 3.2e-97
Identity = 183/225 (81.33%), Postives = 197/225 (87.56%), Query Frame = 1


Query: 1   MDAAMPLCKSARAPSLTGLFAGTTNGLRSSQCTFMGAKKVSFPRQRATGVQYSRKSWKNG 60
           MDA MP+CKS  +P   GL    T GLRSSQC+FM   KV+FPRQRA GV+ S KS K G
Sbjct: 1   MDATMPICKSVASPP-PGLLVWRTGGLRSSQCSFMAGNKVNFPRQRAQGVRVSVKSKKTG 60

Query: 61  RGLQVMCRADKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE 120
             L   CR +KILVANRGEIAVR+IRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE
Sbjct: 61  GTLGATCRQEKILVANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE 120

Query: 121 APSSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM 180
           APS+QSYLVIPNVLSAA+S  CTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM
Sbjct: 121 APSNQSYLVIPNVLSAAVSCKCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM 180

Query: 181 GDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK 226
           GDK+TAR+TMKKAGVPTVPGS+GLLQSTEEA+KLA EIG+PVMIK
Sbjct: 181 GDKATARNTMKKAGVPTVPGSEGLLQSTEEAVKLANEIGFPVMIK 224

[Close]

BLAST of Cla001454 vs. TrEMBL
Match: H9CCH6_TOBAC (Acetyl-CoA carboxylase OS=Nicotiana tabacum GN=ACC PE=2 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.2e-96
Identity = 178/223 (79.82%), Postives = 193/223 (86.55%), Query Frame = 1


Query: 3   AAMPLCKSARAPSLTGLFAGTTNGLRSSQCTFMGAKKVSFPRQRATGVQYSRKSWKNGRG 62
           A   +C  +      GLF G TNG+RSSQC+FM   +++FPRQRA   + S KS K G  
Sbjct: 5   ALTSVCGKSALRFTPGLFLGRTNGIRSSQCSFMAGNRINFPRQRAQAYRVSTKSSKRGGA 64

Query: 63  LQVMCRADKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGEAP 122
           L   CRA+KILVANRGEIAVR+IRTAHE+GIPCVAVYSTIDKDALHVKLADESVCIGEAP
Sbjct: 65  LAATCRAEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAP 124

Query: 123 SSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGD 182
           S+QSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGD
Sbjct: 125 SNQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGD 184

Query: 183 KSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK 226
           KSTARDTMK AGVPTVPGSDGLLQSTEE ++LA+EIGYPVMIK
Sbjct: 185 KSTARDTMKNAGVPTVPGSDGLLQSTEEGVRLAEEIGYPVMIK 227

[Close]

BLAST of Cla001454 vs. TrEMBL
Match: A0A022R4R3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a004277mg PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 2.7e-96
Identity = 180/225 (80.00%), Postives = 194/225 (86.22%), Query Frame = 1


Query: 1   MDAAMPLCKSARAPSLTGLFAGTTNGLRSSQCTFMGAKKVSFPRQRATGVQYSRKSWKNG 60
           MD+A    +S    S  GLF G T+G+RSSQC+F+   +V+FPRQR    +  RKS K+G
Sbjct: 1   MDSATMTFRSNSIRSTPGLFMGRTSGIRSSQCSFIAGNRVNFPRQRVQASRVGRKSGKHG 60

Query: 61  RGLQVMCRADKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE 120
             L V CR DKILVANRGEIAVR+IRTAHE+GIPCVAVYSTIDKDALHVKLADESVCIGE
Sbjct: 61  GALTVTCRDDKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGE 120

Query: 121 APSSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM 180
           APSSQSYLVIPNVLSAAISRGCTMLHPGYGFL+ENAVFVEMCREHGINFIGPNPDSIRVM
Sbjct: 121 APSSQSYLVIPNVLSAAISRGCTMLHPGYGFLSENAVFVEMCREHGINFIGPNPDSIRVM 180

Query: 181 GDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK 226
           GDKSTARDTMK AGVPTVPGSDGLLQS EE I+LA EIGYPVMIK
Sbjct: 181 GDKSTARDTMKNAGVPTVPGSDGLLQSNEEGIRLANEIGYPVMIK 225

[Close]

BLAST of Cla001454 vs. TrEMBL
Match: B5LAS7_CAPAN (Putative acetyl co-enzyme A carboxylase biotin carboxylase subunit OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 3.6e-96
Identity = 177/223 (79.37%), Postives = 193/223 (86.55%), Query Frame = 1


Query: 3   AAMPLCKSARAPSLTGLFAGTTNGLRSSQCTFMGAKKVSFPRQRATGVQYSRKSWKNGRG 62
           A   +C  +   S  GLF G T G+RSSQC+FM   +++FPRQRA   + S KS K G  
Sbjct: 5   AMTSVCGKSALCSTPGLFLGRTTGIRSSQCSFMAGNRINFPRQRAQAYRVSTKSSKRGGA 64

Query: 63  LQVMCRADKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGEAP 122
           L   CRA+KILVANRGEIAVR+IRTAHE+GIPCVAVYSTIDKDALHVKLADESVCIGEAP
Sbjct: 65  LTTTCRAEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAP 124

Query: 123 SSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGD 182
           S+QSYLVIPNVLSAAISRGCTMLHPGYGFL+ENAVFVEMCREHGINFIGPNPDSIRVMGD
Sbjct: 125 SNQSYLVIPNVLSAAISRGCTMLHPGYGFLSENAVFVEMCREHGINFIGPNPDSIRVMGD 184

Query: 183 KSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK 226
           KSTARDTMK AGVPTVPGSDGLLQSTEE ++LA+EIGYPVMIK
Sbjct: 185 KSTARDTMKNAGVPTVPGSDGLLQSTEEGVRLAEEIGYPVMIK 227

[Close]

BLAST of Cla001454 vs. NCBI nr
Match: gi|659069378|ref|XP_008449521.1| (PREDICTED: biotin carboxylase 1, chloroplastic [Cucumis melo])

HSP 1 Score: 432.6 bits (1111), Expect = 4.7e-118
Identity = 215/225 (95.56%), Postives = 220/225 (97.78%), Query Frame = 1


Query: 1   MDAAMPLCKSARAPSLTGLFAGTTNGLRSSQCTFMGAKKVSFPRQRATGVQYSRKSWKNG 60
           MDAAMPLCKSARAPSLTGL+AGTTNG RSSQCTF+GA K+SFPRQRA G+ Y+RKS KNG
Sbjct: 1   MDAAMPLCKSARAPSLTGLYAGTTNGFRSSQCTFVGANKLSFPRQRANGIHYTRKSSKNG 60

Query: 61  RGLQVMCRADKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE 120
           RGLQVMCRADKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE
Sbjct: 61  RGLQVMCRADKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE 120

Query: 121 APSSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM 180
           APSSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM
Sbjct: 121 APSSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM 180

Query: 181 GDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK 226
           GDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK
Sbjct: 181 GDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK 225

[Close]

BLAST of Cla001454 vs. NCBI nr
Match: gi|449453189|ref|XP_004144341.1| (PREDICTED: biotin carboxylase 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 417.5 bits (1072), Expect = 1.6e-113
Identity = 205/225 (91.11%), Postives = 218/225 (96.89%), Query Frame = 1


Query: 1   MDAAMPLCKSARAPSLTGLFAGTTNGLRSSQCTFMGAKKVSFPRQRATGVQYSRKSWKNG 60
           MDAAMPLCKSARAPSLTGLFAGTTN  RSSQCTFMGA K+SFP QRA+G++Y+RKS KNG
Sbjct: 1   MDAAMPLCKSARAPSLTGLFAGTTNRFRSSQCTFMGANKLSFPSQRASGIKYTRKSLKNG 60

Query: 61  RGLQVMCRADKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE 120
           +GLQV+CRA+KILV+NRGEIAVRIIRTAHELGIPCVAVYST+DKDALHVKLADESVCIGE
Sbjct: 61  KGLQVVCRAEKILVSNRGEIAVRIIRTAHELGIPCVAVYSTVDKDALHVKLADESVCIGE 120

Query: 121 APSSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM 180
           APSS SYL+IPNVLSAA+SRGCTMLHPGYGFLAENA FV+MCREHGINFIGPNPDSIRVM
Sbjct: 121 APSSLSYLLIPNVLSAAVSRGCTMLHPGYGFLAENASFVQMCREHGINFIGPNPDSIRVM 180

Query: 181 GDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK 226
           GDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK
Sbjct: 181 GDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK 225

[Close]

BLAST of Cla001454 vs. NCBI nr
Match: gi|1009129455|ref|XP_015881773.1| (PREDICTED: biotin carboxylase 2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 366.7 bits (940), Expect = 3.2e-98
Identity = 184/225 (81.78%), Postives = 200/225 (88.89%), Query Frame = 1


Query: 1   MDAAMPLCKSARAPSLTGLFAGTTNGLRSSQCTFMGAKKVSFPRQRATGVQYSRKSWKNG 60
           MDA M +CKSA +P   GLF   + G+RSSQC+FM   KV+FPRQRA GV+ S KS K G
Sbjct: 1   MDATMHMCKSATSPP--GLFLWRSQGIRSSQCSFMVGSKVNFPRQRAQGVRVSYKSKKQG 60

Query: 61  RGLQVMCRADKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE 120
             L V C  DKILVANRGEIAVR+IRTAHE+GIPCVAVYSTIDKDALHVKLADE+VCIGE
Sbjct: 61  GALNVTCLEDKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGE 120

Query: 121 APSSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM 180
           APS+QSYLVIPNVLSAAISRGCTMLHPGYGFL+ENAVFVEMCREHGINFIGPNP+SIRVM
Sbjct: 121 APSNQSYLVIPNVLSAAISRGCTMLHPGYGFLSENAVFVEMCREHGINFIGPNPESIRVM 180

Query: 181 GDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK 226
           GDKSTARDTMKKAGVPTVPGS+GLLQSTEEA+KLA EIG+PVMIK
Sbjct: 181 GDKSTARDTMKKAGVPTVPGSEGLLQSTEEAVKLANEIGFPVMIK 223

[Close]

BLAST of Cla001454 vs. NCBI nr
Match: gi|697157881|ref|XP_009587691.1| (PREDICTED: biotin carboxylase 1, chloroplastic [Nicotiana tomentosiformis])

HSP 1 Score: 363.2 bits (931), Expect = 3.5e-97
Identity = 180/223 (80.72%), Postives = 194/223 (87.00%), Query Frame = 1


Query: 3   AAMPLCKSARAPSLTGLFAGTTNGLRSSQCTFMGAKKVSFPRQRATGVQYSRKSWKNGRG 62
           A   +C  +   S  GLF G TNG+RSSQC+FM   K++FPRQRA   + S KS K G  
Sbjct: 5   ALTSVCGKSALRSTPGLFLGRTNGIRSSQCSFMAGNKINFPRQRAQAYRVSTKSSKCGGA 64

Query: 63  LQVMCRADKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGEAP 122
           L   CRA+KILVANRGEIAVR+IRTAHE+GIPCVAVYSTIDKDALHVKLADESVCIGEAP
Sbjct: 65  LAATCRAEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAP 124

Query: 123 SSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGD 182
           S+QSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGD
Sbjct: 125 SNQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGD 184

Query: 183 KSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK 226
           KSTARDTMK AGVPTVPGSDGLLQSTEE ++LA+EIGYPVMIK
Sbjct: 185 KSTARDTMKNAGVPTVPGSDGLLQSTEEGVRLAEEIGYPVMIK 227

[Close]

BLAST of Cla001454 vs. NCBI nr
Match: gi|703139285|ref|XP_010106943.1| (Biotin carboxylase 1 [Morus notabilis])

HSP 1 Score: 362.8 bits (930), Expect = 4.6e-97
Identity = 183/225 (81.33%), Postives = 197/225 (87.56%), Query Frame = 1


Query: 1   MDAAMPLCKSARAPSLTGLFAGTTNGLRSSQCTFMGAKKVSFPRQRATGVQYSRKSWKNG 60
           MDA MP+CKS  +P   GL    T GLRSSQC+FM   KV+FPRQRA GV+ S KS K G
Sbjct: 1   MDATMPICKSVASPP-PGLLVWRTGGLRSSQCSFMAGNKVNFPRQRAQGVRVSVKSKKTG 60

Query: 61  RGLQVMCRADKILVANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE 120
             L   CR +KILVANRGEIAVR+IRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE
Sbjct: 61  GTLGATCRQEKILVANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGE 120

Query: 121 APSSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM 180
           APS+QSYLVIPNVLSAA+S  CTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM
Sbjct: 121 APSNQSYLVIPNVLSAAVSCKCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVM 180

Query: 181 GDKSTARDTMKKAGVPTVPGSDGLLQSTEEAIKLAQEIGYPVMIK 226
           GDK+TAR+TMKKAGVPTVPGS+GLLQSTEEA+KLA EIG+PVMIK
Sbjct: 181 GDKATARNTMKKAGVPTVPGSEGLLQSTEEAVKLANEIGFPVMIK 224

The following BLAST results are available for this feature:

BLAST of Cla001454 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ACCC1_POPTR	4.2e-98	81.33	Biotin carboxylase 1, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_831870 ...	[more]
ACCC2_POPTR	5.4e-98	80.44	Biotin carboxylase 2, chloroplastic OS=Populus trichocarpa GN=POPTR_0018s14250g ...	[more]
ACCC_ARATH	4.3e-87	73.16	Biotin carboxylase, chloroplastic OS=Arabidopsis thaliana GN=CAC2 PE=1 SV=1	[more]
ACCC_NOSS1	1.4e-56	59.30	Biotin carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accC PE=3 SV=1	[more]
ACCC_PSEAE	6.1e-49	59.38	Biotin carboxylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PR...	[more]

BLAST of Cla001454 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYI1_CUCSA	1.1e-113	91.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G438530 PE=4 SV=1	[more]
W9RVM8_9ROSA	3.2e-97	81.33	Biotin carboxylase 1 OS=Morus notabilis GN=L484_008219 PE=4 SV=1	[more]
H9CCH6_TOBAC	1.2e-96	79.82	Acetyl-CoA carboxylase OS=Nicotiana tabacum GN=ACC PE=2 SV=1	[more]
A0A022R4R3_ERYGU	2.7e-96	80.00	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a004277mg PE=4 SV=1	[more]
B5LAS7_CAPAN	3.6e-96	79.37	Putative acetyl co-enzyme A carboxylase biotin carboxylase subunit OS=Capsicum a...	[more]

BLAST of Cla001454 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069378\|ref\|XP_008449521.1\|	4.7e-118	95.56	PREDICTED: biotin carboxylase 1, chloroplastic [Cucumis melo]	[more]
gi\|449453189\|ref\|XP_004144341.1\|	1.6e-113	91.11	PREDICTED: biotin carboxylase 2, chloroplastic [Cucumis sativus]	[more]
gi\|1009129455\|ref\|XP_015881773.1\|	3.2e-98	81.78	PREDICTED: biotin carboxylase 2, chloroplastic [Ziziphus jujuba]	[more]
gi\|697157881\|ref\|XP_009587691.1\|	3.5e-97	80.72	PREDICTED: biotin carboxylase 1, chloroplastic [Nicotiana tomentosiformis]	[more]
gi\|703139285\|ref\|XP_010106943.1\|	4.6e-97	81.33	Biotin carboxylase 1 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005479	CbamoylP_synth_lsu-like_ATP-bd
IPR005481	BC-like_N
IPR011764	Biotin_carboxylation_dom
IPR013816	ATP-grasp fold, subdomain 2
IPR016185	PreATP-grasp_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0004075	biotin carboxylase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:2001295	malonyl-CoA biosynthetic process
biological_process	GO:0006090	pyruvate metabolic process
cellular_component	GO:0009343	biotin carboxylase complex
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003989	acetyl-CoA carboxylase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004075	biotin carboxylase activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001454	Cla001454.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005479	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	PFAM	PF02786	CPSase_L_D2	coord: 182..227 score: 1.8
IPR005481	Biotin carboxylase-like, N-terminal domain	PFAM	PF00289	Biotin_carb_N	coord: 70..177 score: 4.6
IPR011764	Biotin carboxylation domain	PROFILE	PS50979	BC	coord: 68..247 score: 27
IPR013816	ATP-grasp fold, subdomain 2	GENE3D	G3DSA:3.30.470.20		coord: 186..225 score: 1.2
IPR016185	Pre-ATP-grasp domain	GENE3D	G3DSA:3.40.50.20		coord: 70..185 score: 3.0
IPR016185	Pre-ATP-grasp domain	unknown	SSF52440	PreATP-grasp domain	coord: 62..180 score: 7.05
None	No IPR available	PANTHER	PTHR18866	CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE	coord: 70..225 score: 1.0E
None	No IPR available	unknown	SSF56059	Glutathione synthetase ATP-binding domain-like	coord: 150..225 score: 6.33

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001454	Cla97C04G070290	Watermelon (97103) v2	wmwmbB296
Cla001454	ClCG04G002920	Watermelon (Charleston Gray)	wcgwmB263
Cla001454	Cucsa.169920	Cucumber (Gy14) v1	cgywmB324

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001454	Cucurbita pepo (Zucchini)	cpewmB085