Cla001441 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001441
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Polygalacturonase (AHRD V1 ***- O81244_CUCME); contains Interpro domain(s) IPR012334 Pectin lyase fold
Location	Chr9 : 23270635 .. 23274617 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCTGGATTAACATTCGATATCGTTAGTCTCGGAGCCAAGCCCGATGGCAAGACCGACGCCTCACCTGCACTTCAAACAGCATGGGACAATGCCTGCGGCTCATCAAAACCGGCCACCATTTATGTCCCCCCTGGTGTATTCTACGTTCAAAATGGGAGATTTAATGGGCCTTGTAAGAACAATGATATTACAATTCTCATCAATGGAACTCTTATGGCTTCCTCAGACATTCAGGCTTTGGCTAAAACTGAAACTTGGATAGCATTTAAACACATAAATGGGCTTTCCATTTCTGGGGGTGTTCTTGATGGGCAAGGAATTGGATTATGGGAATGTAAGCACTCAGGGAAGAGTTGCCCCGATGGAGCCACGGTATGCAAAAAATTTTAAAACAAAAATAATGCATGGTGGCATTCCCATATTGATTTATAAATTTTACTGATTATTGTTCTTGATTGTTTCGAATGTGTGTAGAATCTTGAAATCTTGAATGCACAAAACGTAAAGGTCAGTGGATTATCTTCAGTTAATAGTCAAATGTTCAACATTGTAGTGTATGGTTGCCAAAATGTGCAAATACAAGGAGTGAATGTCTCGGCACCTGGGGATAGTCCGAACACAGATGGCATCCATGTCCAGCAATCATTGAACGTGGCCATCCTAGACTCGAGCATTGGTACTGGTGACGACTGCATCTCGATCGGTCCAGGGACTACCAACTTGTGGATCGAAAATATAAAATGTGGACCTGGACATGGAATTAGGTAACTAGGGATAGATGACAAACGATGTGTTTAGTAATGATTTTGAAGAGTTAAAATCATATTTTTCACATTTAAATAACTCAACATACTATTAATTACTCGTGACGAAATAAAAATTGGGTTTAAAAGTTTATAAAATAACCAAACAATAAGGCCATTTTTTTATTACTAAAATGTTTTACGTTTCTATTTTTGAAAAATTATGCCTTTCTCTATGCACAACATTTTTTAGTAAGTTTTCCACCTTTATTAAAAAGAAATTCTAATGCAAAAATTCAAAATTCATGGACTCAAAATTTGACTAAATTTTTAAAAAGATGTTTAAAAAGTAGGTAACAAATAAAGGAACAATTAGGGCCCAAATGAAAATTGACTGCAAATTTGAAAACGAATGAATTTGGTCTTTTGCTTATGTCAACACCATGAGATATTACCCCTTTAACTCCAAATGCATTTCTTCTTTCTTCTTCATTTTGTAGCTTTAGTTTTAAAAAAGATCTGCACTTTTTTTTTATGCATTCGTCTTCTTCTTCTCTTTTGCATTCTTCTTCTTTCGCTTCTTCTTCTTCTTTCGCTTCTTCTTCTTCTTCCGCTTCTTGATGGTTCTGCGTTGTCCTCTTCTCCATCTTCTTCTCCTTTCATTTTTACTTTTGTTTTTTTCTTATTCTTCATTTATGTAGTTTTTTTTCCTCTCCCTTCTTCGTTCTGTAGTTTTTTCATGAAGAAAAAATTGCAGTTGTGTTTGATGAGTAACTAGAGCGAGAATAAGAAACTAGGCGAGAGCCGAGAATCTAGAGCGAGAATCCAAATAAGGAAAAAAATCAAAGAAAAGGTTGAAGTTGTATCTGATGAGGAACTAGAGGAAGGAGCAAGCATTGAAAAACTAGAGCGAGAATTGAGAAGCTATCAAACAAGGAAAAAATCGAAGAAAAGATTGAAGTTGTGTCTAATGAGGAACTAGAGGAAGGAGTGAGAAACTAGAGTGAGAATTGAGAAATTAGATCAAGAATCGAGAAGCTAGAGCGAGAATTGAGAAGCTAGGAAAAAATCGAAGAAAAGATTGAAGTTGTGTCTGCTGAGGAATTAGAGGAAAGAGCGAGAATCAAGAAACTAAAGTGAGAATCGAGAAACTAGGGCGAGAACCCAAACAAGAGTCAAGCTCTTGCATGCATTTTGAGGTCAAATAGATACTTTCACATGTAGTTGACATCAGTAGAAGACCATTTTTTATTCGTTTTTTAACCTTGGGCCATTTTTCATTTCAGGGGGCATTAGTACAAAATCCCATAAAGAAAGAAGATTAATATGGATAGAAGTAGTGATATTATAAACTTATTTTTTAAAAACAAAATGGTATCACATATTGGGCATAAATAATTAATTTTGAATCCTTATAGTTATGTGCGAGATTAATTTTGAAATATTTAAAATCACTTTTGGCATAGTTAAAATCAGATTAAGAATGAAATTGATTTTCACTAGGGATTTTAATAATTTTCAAAACCATTCTAAAACTTGTCCTAAAGGCGTGGTGCAAAGTGATATTAACCTTAAAGTAGTTGAAAAGATGCTAAAAGTAATTACATAATATATTATCAAGATATAATGAGGAAAGAAATGAACATAAAAATTAGAAAAAAAAATCATGCTACCTCCATGGATTACCTGTCATTGTAATAACATTTAAGAATAATTTATAGTCCACGAAATTAATAAATATATATTATTGAATAACGTGTCAAATTAGGAAGGAAAGTAATATTAAATTTTTCGGAAAATGGTAGATATTTGTTGAATAATGTGTGGGTCGTTATATTTGAAGCATTGGGAGCTTGGGGAAGGAGGCGGAAGAGGCTGGAGTGCAAAATGTGACGGTAACAACGGCTACTTTCACAGGAACACAGAATGGAGTGAGGATTAAGTCTTGGGGAAGGCCAAGCGATGGCTTCGCTACAAAAGTTCTTTTTCAACACATTCTTTTTAATGATGTCAGCAATCCTCTGTTCATTGATCAAGATTACTGCCCAAATCACCAATCCTGCCCCGGTCAGGTACATTATTTCCCTATTAATCCCTTCAAACCTTCACACTTGTATCATTCTTTTTTTCTTTTAAATGTTAATAGGGAGATTTTAAACTTATCATTATGTGGTTTATAATAATCTATAGATTATAATAGATTGTGGTGAGGGTGCAAACTATTTTAGTTTGGATTATAATAGTCTTTGGAGTGTAAATTATGTATTTTTAATTTGTGTAAAAAAGAAAAAAAGTAAACATTGTAACGAAGAAGGATTTGTAATAGTAATATTGTAGTTAATGGTAATTTATAATAGTTAAAAACACCAACCATTCTAATCGGAGACCTAAACATTGAAGTTGGGAGTCCAAATACCTACTAAATATTCAACTTCATATGTAATTAATTTATTTTGATGGGGAATATATTGCATTCGACAACGTAAACTCTCATATATTTCTACAATTGATCGACAATCATCTACCTTGGCCATCATTAACTTTGTTTTAGTTTTACTCTAAATACTTCATACTATTGGAGATAGTTGACCAATAGTGACCTCACTTATATATTATAATATTCTACATGTTTGTACTTTGATTACATTCCCAACGTGAATTATATTTAACTGTTGGATTGTAGGGTTAGTTTTGACGGTTGCATCTTGCTTCATTTTGTTGCCAAATTTGAATTTGAGTGGATTTTGATATTCAGTTTTGCTTGATTTTAATTTAGTTTTTGTTGGTTTGAATTTCATACCACTTATATGTTAGTCTATATTTCTGTTTTACAAGATAGTTTTGAGAATAGTTTTGAGAATGTTTTAAATTTCAAAGCTTATGATAGTTTAGGGTTTGATTAACGAAATAAAAGATATAACATATAACGTTGAGAATGACTCAGTAATTGAAGTTTACATGTCTGAAAGGATATTTTCATAGCATTTTGATTTTCCTTGTATGTGTGACTAGGCTTCTGGAATTAAAGTTAGCGATGTTACATACCAAGATATGCATGGAACATCAGCCACTGAAGTAGCAATCAACTTTAACTGTAGCCCATCAAATCCTTGCACTGGATTAAGGTTGGAAGACATAAAGCTGACTTACAACAATCAAATTCCCCAAGCTTCGTGTAAAAATGCTCAAGGAACTGCCTCTGGTCTTGTTCAACCTCCTAGTTGCTTAGCATAG

mRNA sequence

ATGGTTGCTGGATTAACATTCGATATCGTTAGTCTCGGAGCCAAGCCCGATGGCAAGACCGACGCCTCACCTGCACTTCAAACAGCATGGGACAATGCCTGCGGCTCATCAAAACCGGCCACCATTTATGTCCCCCCTGGTGTATTCTACGTTCAAAATGGGAGATTTAATGGGCCTTGTAAGAACAATGATATTACAATTCTCATCAATGGAACTCTTATGGCTTCCTCAGACATTCAGGCTTTGGCTAAAACTGAAACTTGGATAGCATTTAAACACATAAATGGGCTTTCCATTTCTGGGGGTGTTCTTGATGGGCAAGGAATTGGATTATGGGAATGTAAGCACTCAGGGAAGAGTTGCCCCGATGGAGCCACGAATCTTGAAATCTTGAATGCACAAAACGTAAAGGTCAGTGGATTATCTTCAGTTAATAGTCAAATGTTCAACATTGTAGTGTATGGTTGCCAAAATGTGCAAATACAAGGAGTGAATGTCTCGGCACCTGGGGATAGTCCGAACACAGATGGCATCCATGTCCAGCAATCATTGAACGTGGCCATCCTAGACTCGAGCATTGGTACTGGTGACGACTGCATCTCGATCGGTCCAGGGACTACCAACTTGTGGATCGAAAATATAAAATGTGGACCTGGACATGGAATTAGCATTGGGAGCTTGGGGAAGGAGGCGGAAGAGGCTGGAGTGCAAAATGTGACGGTAACAACGGCTACTTTCACAGGAACACAGAATGGAGTGAGGATTAAGTCTTGGGGAAGGCCAAGCGATGGCTTCGCTACAAAAGTTCTTTTTCAACACATTCTTTTTAATGATGTCAGCAATCCTCTGTTCATTGATCAAGATTACTGCCCAAATCACCAATCCTGCCCCGGTCAGGCTTCTGGAATTAAAGTTAGCGATGTTACATACCAAGATATGCATGGAACATCAGCCACTGAAGTAGCAATCAACTTTAACTGTAGCCCATCAAATCCTTGCACTGGATTAAGGTTGGAAGACATAAAGCTGACTTACAACAATCAAATTCCCCAAGCTTCGTGTAAAAATGCTCAAGGAACTGCCTCTGGTCTTGTTCAACCTCCTAGTTGCTTAGCATAG

Coding sequence (CDS)

ATGGTTGCTGGATTAACATTCGATATCGTTAGTCTCGGAGCCAAGCCCGATGGCAAGACCGACGCCTCACCTGCACTTCAAACAGCATGGGACAATGCCTGCGGCTCATCAAAACCGGCCACCATTTATGTCCCCCCTGGTGTATTCTACGTTCAAAATGGGAGATTTAATGGGCCTTGTAAGAACAATGATATTACAATTCTCATCAATGGAACTCTTATGGCTTCCTCAGACATTCAGGCTTTGGCTAAAACTGAAACTTGGATAGCATTTAAACACATAAATGGGCTTTCCATTTCTGGGGGTGTTCTTGATGGGCAAGGAATTGGATTATGGGAATGTAAGCACTCAGGGAAGAGTTGCCCCGATGGAGCCACGAATCTTGAAATCTTGAATGCACAAAACGTAAAGGTCAGTGGATTATCTTCAGTTAATAGTCAAATGTTCAACATTGTAGTGTATGGTTGCCAAAATGTGCAAATACAAGGAGTGAATGTCTCGGCACCTGGGGATAGTCCGAACACAGATGGCATCCATGTCCAGCAATCATTGAACGTGGCCATCCTAGACTCGAGCATTGGTACTGGTGACGACTGCATCTCGATCGGTCCAGGGACTACCAACTTGTGGATCGAAAATATAAAATGTGGACCTGGACATGGAATTAGCATTGGGAGCTTGGGGAAGGAGGCGGAAGAGGCTGGAGTGCAAAATGTGACGGTAACAACGGCTACTTTCACAGGAACACAGAATGGAGTGAGGATTAAGTCTTGGGGAAGGCCAAGCGATGGCTTCGCTACAAAAGTTCTTTTTCAACACATTCTTTTTAATGATGTCAGCAATCCTCTGTTCATTGATCAAGATTACTGCCCAAATCACCAATCCTGCCCCGGTCAGGCTTCTGGAATTAAAGTTAGCGATGTTACATACCAAGATATGCATGGAACATCAGCCACTGAAGTAGCAATCAACTTTAACTGTAGCCCATCAAATCCTTGCACTGGATTAAGGTTGGAAGACATAAAGCTGACTTACAACAATCAAATTCCCCAAGCTTCGTGTAAAAATGCTCAAGGAACTGCCTCTGGTCTTGTTCAACCTCCTAGTTGCTTAGCATAG

Protein sequence

MVAGLTFDIVSLGAKPDGKTDASPALQTAWDNACGSSKPATIYVPPGVFYVQNGRFNGPCKNNDITILINGTLMASSDIQALAKTETWIAFKHINGLSISGGVLDGQGIGLWECKHSGKSCPDGATNLEILNAQNVKVSGLSSVNSQMFNIVVYGCQNVQIQGVNVSAPGDSPNTDGIHVQQSLNVAILDSSIGTGDDCISIGPGTTNLWIENIKCGPGHGISIGSLGKEAEEAGVQNVTVTTATFTGTQNGVRIKSWGRPSDGFATKVLFQHILFNDVSNPLFIDQDYCPNHQSCPGQASGIKVSDVTYQDMHGTSATEVAINFNCSPSNPCTGLRLEDIKLTYNNQIPQASCKNAQGTASGLVQPPSCLA

Homology

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BLAST of Cla001441 vs. Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 5.6e-139
Identity = 229/368 (62.23%), Postives = 282/368 (76.63%), Query Frame = 1


Query: 5   LTFDIVSLGAKPDGKTDASPALQTAWDNACGSSKPATIYVPPGVFYVQNGRFNGPCKNND 64
           LT+++ SLGAK DGKTD++ A  +AW  AC S  P  IYVP G F++++  F+GPCKNN 
Sbjct: 26  LTYNVASLGAKADGKTDSTKAFLSAWAKACASMNPGVIYVPAGTFFLRDVVFSGPCKNNA 85

Query: 65  ITILINGTLMASSDIQALAKTETWIAFKHINGLSISGGVLDGQGIGLWECKHS-GKSCPD 124
           IT  I GTL+A SD + +     WI F H+NG++ISGG+LDGQG  LW CK   G+SCP 
Sbjct: 86  ITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTISGGILDGQGTALWACKACHGESCPS 145

Query: 125 GATNLEILNAQNVKVSGLSSVNSQMFNIVVYGCQNVQIQGVNVSAPGDSPNTDGIHVQQS 184
           GAT L   ++ N+ VSGL+S+NSQMF+IV+   QNVQ+QGV VS  G+SPNTDGIHVQ S
Sbjct: 146 GATTLGFSDSNNIVVSGLASLNSQMFHIVINDFQNVQMQGVRVSRSGNSPNTDGIHVQMS 205

Query: 185 LNVAILDSSIGTGDDCISIGPGTTNLWIENIKCGPGHGISIGSLGKEAEEAGVQNVTVTT 244
             V IL+S I TGDDC+SIGPGT+NLWIE + CGPGHGISIGSLGKE EEAGVQNVTV T
Sbjct: 206 SGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGPGHGISIGSLGKEQEEAGVQNVTVKT 265

Query: 245 ATFTGTQNGVRIKSWGRPSDGFATKVLFQHILFNDVSNPLFIDQDYCPNHQSCPGQASGI 304
            TF+GTQNG+RIKSWGRPS GFA  +LFQH    +V NP+ IDQ YCP+++ CPGQ SG+
Sbjct: 266 VTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNVENPIVIDQHYCPDNKGCPGQVSGV 325

Query: 305 KVSDVTYQDMHGTSATEVAINFNCSPSNPCTGLRLEDIKLTYNNQIPQASCKNAQGTASG 364
           ++SDVTY+D+HGTSATEVA+ F+CSP +PC  ++LED+KLTY NQ  ++SC +A GT  G
Sbjct: 326 QISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLEDVKLTYKNQAAESSCSHADGTTEG 385

Query: 365 LVQPPSCL 372
           +VQP SCL
Sbjct: 386 VVQPTSCL 393

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BLAST of Cla001441 vs. Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 6.7e-108
Identity = 193/368 (52.45%), Postives = 255/368 (69.29%), Query Frame = 1


Query: 6   TFDIVSLGAKPDGKTDASPALQTAWDNACGSSKPATIYVPPGVFYVQNGRFNG-PCKNND 65
           T +++S GAKPDG  D++ A   AWD AC S+ P TI VP G F V N  F+G  CK   
Sbjct: 32  TLNVLSYGAKPDGSKDSTKAFLAAWDVACASANPTTIIVPKGRFLVGNLVFHGNECKQAP 91

Query: 66  ITILINGTLMASSDIQALAKTETWIAFKHINGLSISGGVLDGQGIGLWECKHSG-KSCPD 125
           I+I I G+++A  D + +A ++ WI F+ +  +SI GG+LD QG  LW+CK++G  +CP 
Sbjct: 92  ISIRIAGSIVAPEDFRIIASSKHWIWFEDVTDVSIYGGILDAQGTSLWKCKNNGGHNCPT 151

Query: 126 GATNLEILNAQNVKVSGLSSVNSQMFNIVVYGCQNVQIQGVNVSAPGDSPNTDGIHVQQS 185
           GA +L    + N+K+SGL+S+NSQ F+IV+    NV I GV VSA  +SPNTDGIHV+ S
Sbjct: 152 GAKSLVFSGSNNIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESS 211

Query: 186 LNVAILDSSIGTGDDCISIGPGTTNLWIENIKCGPGHGISIGSLGKEAEEAGVQNVTVTT 245
            +V I +S IGTGDDCISIGPG+TN++I+ I+CGPGHGISIGSLG+  EE GV NVTV+ 
Sbjct: 212 HSVHITNSRIGTGDDCISIGPGSTNVFIQTIRCGPGHGISIGSLGRAEEEQGVDNVTVSN 271

Query: 246 ATFTGTQNGVRIKSWGRPSDGFATKVLFQHILFNDVSNPLFIDQDYCPNHQSCPGQASGI 305
             F GT NGVRIK+WG+ S+ FA  ++FQHI    V NP+ IDQ YC  H+ CP Q SG+
Sbjct: 272 VDFMGTNNGVRIKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYC-LHKPCPKQESGV 331

Query: 306 KVSDVTYQDMHGTSATEVAINFNCSPSNPCTGLRLEDIKLTYNNQIPQASCKNAQGTASG 365
           KVS+V Y+D+HGTS TEVA+  +CS   PCTG+ ++D+ L   ++  QASC NA G+A+ 
Sbjct: 332 KVSNVRYEDIHGTSNTEVAVLLDCSKEKPCTGIVMDDVNLVSVHRPAQASCDNANGSAND 391

Query: 366 LVQPPSCL 372
           +V    CL
Sbjct: 392 VVPFTPCL 398

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BLAST of Cla001441 vs. Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.7e-79
Identity = 158/373 (42.36%), Postives = 227/373 (60.86%), Query Frame = 1


Query: 4   GLTFDIVSLGAKPDGKTDASPALQTAWDNACGSSKPATIYVPPGVFYVQNGRFNGPCKNN 63
           G +FDI  LGA  +GKTD++ A+Q AW +ACG +   TI +P G F V    F GPCK  
Sbjct: 38  GGSFDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTGPCKG- 97

Query: 64  DITILINGTLMASSDIQALAKTETWIAFKHINGLSISG-GVLDGQGIGLWECKHSGKS-- 123
           D+TI +NG L+A++D+        WI    ++ L I+G G LDGQG  +W      K   
Sbjct: 98  DVTIQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQGPAVWSKNSCVKKYD 157

Query: 124 CPDGATNLEILNAQNVKVSGLSSVNSQMFNIVVYGCQNVQIQGVNVSAPGDSPNTDGIHV 183
           C     +L +    N +VSG++ +NS+ F++ +Y C+++ I+ VNV+APGDSPNTDGIH+
Sbjct: 158 CKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHM 217

Query: 184 QQSLNVAILDSSIGTGDDCISIGPGTTNLWIENIKCGPGHGISIGSLGKEAEEAGVQNVT 243
             S  V I ++ IG GDDCISIGPGT+ + I  + CGPGHGISIGSLG+  +E  V ++ 
Sbjct: 218 GDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDIN 277

Query: 244 VTTATFTGTQNGVRIKSWGRPSDGF-ATKVLFQHILFNDVSNPLFIDQDYCPNHQSCPGQ 303
           V   T   T NGVRIK++   +    A+K+ +++I   D   P+ ID  YCPN       
Sbjct: 278 VKDCTLKKTANGVRIKAYEDAASVLTASKIHYENIKMEDSGYPIIIDMKYCPNKLCTANG 337

Query: 304 ASGIKVSDVTYQDMHGTSATEVAINFNCSPSNPCTGLRLEDIKLTYN--NQIPQASCKNA 363
           AS + V DVT++++ GTS+T  A+N  C+   PCTG+ ++D+ + Y+  N    A CKNA
Sbjct: 338 ASKVTVKDVTFKNITGTSSTPEAVNLLCTAKIPCTGVTMDDVNIKYSGTNNKTMAVCKNA 397

Query: 364 QGTASGLVQPPSC 371
           +G+A G ++  +C
Sbjct: 398 KGSAKGCLKELAC 409

[Close]

BLAST of Cla001441 vs. Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 2.1e-77
Identity = 154/373 (41.29%), Postives = 225/373 (60.32%), Query Frame = 1


Query: 4   GLTFDIVSLGAKPDGKTDASPALQTAWDNACGSSKPATIYVPPGVFYVQNGRFNGPCKNN 63
           G +FDI  LGA  +GKTD++ A+Q AW +ACG +   TI +P G F V    F GPCK  
Sbjct: 38  GGSFDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCKG- 97

Query: 64  DITILINGTLMASSDIQALAKTETWIAFKHINGLSISG-GVLDGQGIGLWECKHSGKS-- 123
           D+TI ++G L+A++D+    +   WI    ++ L I+G G LDGQG  +W      K   
Sbjct: 98  DVTIQVDGNLLATTDLSQYKEHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKYD 157

Query: 124 CPDGATNLEILNAQNVKVSGLSSVNSQMFNIVVYGCQNVQIQGVNVSAPGDSPNTDGIHV 183
           C     +L +    N +VSG++ +NS+ F++ +Y C+N+ I+ V V+APGDSPNTDGIH+
Sbjct: 158 CKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGIHM 217

Query: 184 QQSLNVAILDSSIGTGDDCISIGPGTTNLWIENIKCGPGHGISIGSLGKEAEEAGVQNVT 243
             S  + I ++ IG GDDCISIGPGT+ + I  + CGPGHGISIGSLG+  +E  V ++ 
Sbjct: 218 GDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDIN 277

Query: 244 VTTATFTGTQNGVRIKSWGRPSDGF-ATKVLFQHILFNDVSNPLFIDQDYCPNHQSCPGQ 303
           V   T   T  GVRIK++   +     +K+ +++I   D +NP+FID  YCPN       
Sbjct: 278 VKDCTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFIDMKYCPNKLCTANG 337

Query: 304 ASGIKVSDVTYQDMHGTSATEVAINFNCSPSNPCTGLRLEDIKLTYN--NQIPQASCKNA 363
           AS + V DVT++++ GTS+T  AI+  C+   PCTG  ++D+ + Y+  N    A C NA
Sbjct: 338 ASKVTVKDVTFKNITGTSSTPEAISLLCTAKVPCTGATMDDVNVEYSGTNNKTMAICTNA 397

Query: 364 QGTASGLVQPPSC 371
           +G+  G ++  +C
Sbjct: 398 KGSTKGCLKELAC 409

[Close]

BLAST of Cla001441 vs. Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.0e-76
Identity = 152/373 (40.75%), Postives = 225/373 (60.32%), Query Frame = 1


Query: 4   GLTFDIVSLGAKPDGKTDASPALQTAWDNACGSSKPATIYVPPGVFYVQNGRFNGPCKNN 63
           G +FDI  LGA  +GKTD++ A+Q AW +ACG +   TI +P G F V    F GPCK  
Sbjct: 38  GGSFDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCKG- 97

Query: 64  DITILINGTLMASSDIQALAKTETWIAFKHINGLSISG-GVLDGQGIGLWECKHSGKS-- 123
           D+TI ++G L+A++D+        WI    ++ L I+G G LDGQG  +W      K   
Sbjct: 98  DVTIQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKYD 157

Query: 124 CPDGATNLEILNAQNVKVSGLSSVNSQMFNIVVYGCQNVQIQGVNVSAPGDSPNTDGIHV 183
           C     +L +    N +VSG++ +NS+ F++ +Y C+++ I+ V V+APGDSPNTDGIH+
Sbjct: 158 CKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHM 217

Query: 184 QQSLNVAILDSSIGTGDDCISIGPGTTNLWIENIKCGPGHGISIGSLGKEAEEAGVQNVT 243
             S  + I ++ IG GDDCISIGPGT+ + I  + CGPGHGISIGSLG+  +E  V ++ 
Sbjct: 218 GDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDIN 277

Query: 244 VTTATFTGTQNGVRIKSWGRPSDGF-ATKVLFQHILFNDVSNPLFIDQDYCPNHQSCPGQ 303
           V   T   T  GVRIK++   +     +K+ +++I   D +NP+FID  YCPN       
Sbjct: 278 VKDCTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFIDMKYCPNKLCTANG 337

Query: 304 ASGIKVSDVTYQDMHGTSATEVAINFNCSPSNPCTGLRLEDIKLTYN--NQIPQASCKNA 363
           AS + V DVT++++ GTS+T  A++  C+   PCTG+ ++D+ + Y+  N    A C NA
Sbjct: 338 ASKVTVKDVTFKNITGTSSTPEAVSLLCTAKVPCTGVTMDDVNVEYSGTNNKTMAICTNA 397

Query: 364 QGTASGLVQPPSC 371
           +G+  G ++  +C
Sbjct: 398 KGSTKGCLKELAC 409

[Close]

BLAST of Cla001441 vs. TrEMBL
Match: A0A0A0KN91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409610 PE=3 SV=1)

HSP 1 Score: 629.4 bits (1622), Expect = 2.8e-177
Identity = 297/372 (79.84%), Postives = 339/372 (91.13%), Query Frame = 1


Query: 1   MVAGLTFDIVSLGAKPDGKTDASPALQTAWDNACGSSKPATIYVPPGVFYVQNGRFNGPC 60
           + AG TF+IVSLGA  DGKTDAS A Q AW NACGSS+PATIYVP G FY+Q+G F+GPC
Sbjct: 21  LAAGSTFNIVSLGAIADGKTDASHAFQEAWANACGSSEPATIYVPNGAFYIQSGNFSGPC 80

Query: 61  KNNDITILINGTLMASSDIQALAKTETWIAFKHINGLSISGGVLDGQGIGLWECKHSGKS 120
           KNN ITI+INGTL+ASS+IQ LA+++ WIAF+ INGLSI GGV+DGQGIGLW CKHSGKS
Sbjct: 81  KNNAITIVINGTLIASSNIQVLAQSQAWIAFRQINGLSIYGGVIDGQGIGLWNCKHSGKS 140

Query: 121 CPDGATNLEILNAQNVKVSGLSSVNSQMFNIVVYGCQNVQIQGVNVSAPGDSPNTDGIHV 180
           CPDGATNLEI +AQNV V+GLSS+NSQMFNIVVYGC+NVQIQGVNVS+ GDSPNTDGIHV
Sbjct: 141 CPDGATNLEISHAQNVNVNGLSSINSQMFNIVVYGCENVQIQGVNVSSAGDSPNTDGIHV 200

Query: 181 QQSLNVAILDSSIGTGDDCISIGPGTTNLWIENIKCGPGHGISIGSLGKEAEEAGVQNVT 240
           QQSLNV I  +SIGTGDDCISIGPGTTNLW+ENIKCGPGHGISIGSLG++ EEAGV+NVT
Sbjct: 201 QQSLNVNISSTSIGTGDDCISIGPGTTNLWMENIKCGPGHGISIGSLGRQVEEAGVENVT 260

Query: 241 VTTATFTGTQNGVRIKSWGRPSDGFATKVLFQHILFNDVSNPLFIDQDYCPNHQSCPGQA 300
           VTTATFTGTQNGVRIKSWGRPS+ FA K+LFQHI F +V+NP+ IDQ+YCPN+Q CPGQA
Sbjct: 261 VTTATFTGTQNGVRIKSWGRPSNAFANKILFQHIRFYNVNNPILIDQNYCPNNQGCPGQA 320

Query: 301 SGIKVSDVTYQDMHGTSATEVAINFNCSPSNPCTGLRLEDIKLTYNNQIPQASCKNAQGT 360
           SG+KVSDVTYQD++GTSA+EVAINF+CSP+NPCTG+ LEDI+LTYNNQIP+ASCKNA+GT
Sbjct: 321 SGVKVSDVTYQDVNGTSASEVAINFDCSPTNPCTGITLEDIQLTYNNQIPKASCKNARGT 380

Query: 361 ASGLVQPPSCLA 373
           ASG +QP SCLA
Sbjct: 381 ASGPLQPRSCLA 392

[Close]

BLAST of Cla001441 vs. TrEMBL
Match: S5MMR8_9ROSA (Polygalacturonase 2 OS=Pyrus x bretschneideri GN=PG2 PE=2 SV=1)

HSP 1 Score: 533.9 bits (1374), Expect = 1.6e-148
Identity = 248/368 (67.39%), Postives = 292/368 (79.35%), Query Frame = 1


Query: 3   AGLTFDIVSLGAKPDGKTDASPALQTAWDNACGSSKPATIYVPPGVFYVQNGRFNGPCKN 62
           A +TF + SLGAK DG TD++ A  +AW NAC S  PA IYVP G F + N  F+GPCKN
Sbjct: 30  AAVTFSVSSLGAKADGSTDSTKAFLSAWSNACASVNPAVIYVPAGRFLLSNAVFSGPCKN 89

Query: 63  NDITILINGTLMASSDIQALAKTETWIAFKHINGLSISGGVLDGQGIGLWECKHSGKSCP 122
           N IT  I GTL+A SD Q +     W+ F+H+NG++ISGGVLDGQG GLW+CK SGKSCP
Sbjct: 90  NAITFRIAGTLVAPSDYQVIGNAGNWLLFQHVNGVTISGGVLDGQGTGLWDCKSSGKSCP 149

Query: 123 DGATNLEILNAQNVKVSGLSSVNSQMFNIVVYGCQNVQIQGVNVSAPGDSPNTDGIHVQQ 182
            GAT L   N+ NV VSGL S+NSQMF+IVV GCQNV++QGV V+A G+SPNTDGIHVQ 
Sbjct: 150 SGATTLSFSNSNNVVVSGLVSLNSQMFHIVVNGCQNVKMQGVKVNAAGNSPNTDGIHVQM 209

Query: 183 SLNVAILDSSIGTGDDCISIGPGTTNLWIENIKCGPGHGISIGSLGKEAEEAGVQNVTVT 242
           S  V ILDS I TGDDC+S+GPGTTNLWIEN+ CGPGHGISIGSLGK+ +EAGVQNVTV 
Sbjct: 210 SSGVTILDSKISTGDDCVSVGPGTTNLWIENVACGPGHGISIGSLGKDQQEAGVQNVTVK 269

Query: 243 TATFTGTQNGVRIKSWGRPSDGFATKVLFQHILFNDVSNPLFIDQDYCPNHQSCPGQASG 302
           T TFTGT+NGVRIKSWGRPS GFA  +LFQHI+  +V NP+ IDQ+YCPN + CPGQASG
Sbjct: 270 TITFTGTENGVRIKSWGRPSTGFARSILFQHIVMTNVQNPIIIDQNYCPNDKGCPGQASG 329

Query: 303 IKVSDVTYQDMHGTSATEVAINFNCSPSNPCTGLRLEDIKLTYNNQIPQASCKNAQGTAS 362
           +KVSDVTYQD+HGTSATEVA+ F+CS   PC G+RL+D+KLTYNNQ  +ASC +A GT +
Sbjct: 330 VKVSDVTYQDIHGTSATEVAVKFDCSSMYPCNGIRLQDVKLTYNNQAAEASCIHAGGTTA 389

Query: 363 GLVQPPSC 371
           G VQP SC
Sbjct: 390 GTVQPTSC 397

[Close]

BLAST of Cla001441 vs. TrEMBL
Match: G8FU52_PYRPY (Polygalacturonase OS=Pyrus pyrifolia GN=PG2 PE=2 SV=1)

HSP 1 Score: 533.5 bits (1373), Expect = 2.1e-148
Identity = 248/368 (67.39%), Postives = 292/368 (79.35%), Query Frame = 1


Query: 3   AGLTFDIVSLGAKPDGKTDASPALQTAWDNACGSSKPATIYVPPGVFYVQNGRFNGPCKN 62
           A +TF + SLGAK DG TD++ A  +AW NAC S  PA IYVP G F + N  F+GPCKN
Sbjct: 30  AAVTFSVSSLGAKADGSTDSTKAFLSAWSNACASVNPAVIYVPAGRFLLGNAVFSGPCKN 89

Query: 63  NDITILINGTLMASSDIQALAKTETWIAFKHINGLSISGGVLDGQGIGLWECKHSGKSCP 122
           N IT  I GTL+A SD Q +     W+ F+H+NG++ISGGVLDGQG GLW+CK SGKSCP
Sbjct: 90  NAITFRIAGTLVAPSDYQVIGNAGNWLLFQHVNGVTISGGVLDGQGTGLWDCKSSGKSCP 149

Query: 123 DGATNLEILNAQNVKVSGLSSVNSQMFNIVVYGCQNVQIQGVNVSAPGDSPNTDGIHVQQ 182
            GAT L   N+ NV VSGL S+NSQMF+IVV GCQNV++QGV V+A G+SPNTDGIHVQ 
Sbjct: 150 SGATTLSFSNSNNVVVSGLISLNSQMFHIVVNGCQNVKMQGVKVNAAGNSPNTDGIHVQM 209

Query: 183 SLNVAILDSSIGTGDDCISIGPGTTNLWIENIKCGPGHGISIGSLGKEAEEAGVQNVTVT 242
           S  V ILDS I TGDDC+S+GPGTTNLWIEN+ CGPGHGISIGSLGK+ +EAGVQNVTV 
Sbjct: 210 SSGVTILDSKISTGDDCVSVGPGTTNLWIENVACGPGHGISIGSLGKDQQEAGVQNVTVK 269

Query: 243 TATFTGTQNGVRIKSWGRPSDGFATKVLFQHILFNDVSNPLFIDQDYCPNHQSCPGQASG 302
           T TFTGT+NGVRIKSWGRPS GFA  +LFQHI+  +V NP+ IDQ+YCPN + CPGQASG
Sbjct: 270 TVTFTGTENGVRIKSWGRPSTGFARSILFQHIIMTNVQNPIVIDQNYCPNDKGCPGQASG 329

Query: 303 IKVSDVTYQDMHGTSATEVAINFNCSPSNPCTGLRLEDIKLTYNNQIPQASCKNAQGTAS 362
           +KVSDVTYQD+HGTSATEVA+ F+CS   PC G+RL+D+KLTYNNQ  +ASC +A GT +
Sbjct: 330 VKVSDVTYQDIHGTSATEVAVKFDCSSMYPCNGIRLQDVKLTYNNQAAEASCIHAGGTTA 389

Query: 363 GLVQPPSC 371
           G VQP SC
Sbjct: 390 GTVQPTSC 397

[Close]

BLAST of Cla001441 vs. TrEMBL
Match: Q68UW1_PYRCO (Polygalacturonase OS=Pyrus communis GN=pg2 PE=2 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 7.9e-148
Identity = 247/368 (67.12%), Postives = 292/368 (79.35%), Query Frame = 1


Query: 3   AGLTFDIVSLGAKPDGKTDASPALQTAWDNACGSSKPATIYVPPGVFYVQNGRFNGPCKN 62
           A +TF + SLGAK DG TD++ A  +AW NAC S  PA IYVP G F + N  F+GPCKN
Sbjct: 30  AAVTFSVSSLGAKADGSTDSTKAFLSAWSNACASVNPAVIYVPAGRFLLGNAVFSGPCKN 89

Query: 63  NDITILINGTLMASSDIQALAKTETWIAFKHINGLSISGGVLDGQGIGLWECKHSGKSCP 122
           N IT  I GTL+A SD + +     W+ F+H+NG++ISGGVLDGQG GLW+CK SGKSCP
Sbjct: 90  NAITFRIAGTLVAPSDYRVIGNAGNWLLFQHVNGVTISGGVLDGQGTGLWDCKSSGKSCP 149

Query: 123 DGATNLEILNAQNVKVSGLSSVNSQMFNIVVYGCQNVQIQGVNVSAPGDSPNTDGIHVQQ 182
            GAT L   N+ NV VSGL S+NSQMF+IVV GCQNV++QGV V+A G+SPNTDGIHVQ 
Sbjct: 150 SGATTLSFSNSNNVVVSGLISLNSQMFHIVVNGCQNVKMQGVKVNAAGNSPNTDGIHVQM 209

Query: 183 SLNVAILDSSIGTGDDCISIGPGTTNLWIENIKCGPGHGISIGSLGKEAEEAGVQNVTVT 242
           S  V ILDS I TGDDC+S+GPGTTNLWIEN+ CGPGHGISIGSLGK+ +EAGVQNVTV 
Sbjct: 210 SSGVTILDSKISTGDDCVSVGPGTTNLWIENVACGPGHGISIGSLGKDQQEAGVQNVTVK 269

Query: 243 TATFTGTQNGVRIKSWGRPSDGFATKVLFQHILFNDVSNPLFIDQDYCPNHQSCPGQASG 302
           T TFTGT+NGVRIKSWGRPS GFA  +LFQHI+  +V NP+ IDQ+YCPN + CPGQASG
Sbjct: 270 TVTFTGTENGVRIKSWGRPSTGFARSILFQHIVMTNVQNPIVIDQNYCPNDKGCPGQASG 329

Query: 303 IKVSDVTYQDMHGTSATEVAINFNCSPSNPCTGLRLEDIKLTYNNQIPQASCKNAQGTAS 362
           +KVSDVTYQD+HGTSATEVA+ F+CS   PC G+RL+D+KLTYNNQ  +ASC +A GT +
Sbjct: 330 VKVSDVTYQDIHGTSATEVAVKFDCSSMYPCNGIRLQDVKLTYNNQAAEASCIHAGGTTA 389

Query: 363 GLVQPPSC 371
           G VQP SC
Sbjct: 390 GTVQPTSC 397

[Close]

BLAST of Cla001441 vs. TrEMBL
Match: B9SSX1_RICCO (Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1267820 PE=3 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 8.7e-147
Identity = 241/365 (66.03%), Postives = 295/365 (80.82%), Query Frame = 1


Query: 7   FDIVSLGAKPDGKTDASPALQTAWDNACGSSKPATIYVPPGVFYVQNGRFNGPCKNNDIT 66
           ++++S GAKPDG+TD++ A   AW  ACGS+KP TIYVP G F++++  F GPCKNN I 
Sbjct: 29  YNVLSYGAKPDGRTDSTKAFLAAWTQACGSTKPPTIYVPSGKFFLKDLSFGGPCKNNAIL 88

Query: 67  ILINGTLMASSDIQALAKTETWIAFKHINGLSISGGVLDGQGIGLWECKHSGKSCPDGAT 126
             I+GTL+A SD + +     W+ F+H+NG++ISGG+LDGQG GLW CK SGK+CP GAT
Sbjct: 89  FRIDGTLVAPSDYKVIGNAGYWLYFQHVNGVTISGGILDGQGSGLWACKASGKNCPSGAT 148

Query: 127 NLEILNAQNVKVSGLSSVNSQMFNIVVYGCQNVQIQGVNVSAPGDSPNTDGIHVQQSLNV 186
           +L   N++N+ ++GL+S NSQMF+IV+ GCQNV++QGV VSA GDSPNTDGIHVQQS  V
Sbjct: 149 SLGFSNSKNIAINGLTSQNSQMFHIVINGCQNVKVQGVTVSASGDSPNTDGIHVQQSGGV 208

Query: 187 AILDSSIGTGDDCISIGPGTTNLWIENIKCGPGHGISIGSLGKEAEEAGVQNVTVTTATF 246
            IL+S I TGDDCISIGPG TNLWIENI CGPGHGISIGSLGK+ +EAGVQNVTV T TF
Sbjct: 209 TILNSKIRTGDDCISIGPGATNLWIENIACGPGHGISIGSLGKDLQEAGVQNVTVKTVTF 268

Query: 247 TGTQNGVRIKSWGRPSDGFATKVLFQHILFNDVSNPLFIDQDYCPNHQSCPGQASGIKVS 306
           TGTQNGVRIKSWGRPS GFA  +LFQH +  +V NP+ IDQ+YCP++++CPGQ SG+K+S
Sbjct: 269 TGTQNGVRIKSWGRPSSGFARNILFQHAIMTNVQNPIVIDQNYCPDNKNCPGQESGVKIS 328

Query: 307 DVTYQDMHGTSATEVAINFNCSPSNPCTGLRLEDIKLTYNNQIPQASCKNAQGTASGLVQ 366
            VTYQD+HGTSATEVA+ F+CS   PCTG++LED+KLTY NQ   ASC NA GTASG VQ
Sbjct: 329 GVTYQDIHGTSATEVAVKFDCSKKEPCTGIKLEDVKLTYKNQPADASCNNADGTASGFVQ 388

Query: 367 PPSCL 372
           P SCL
Sbjct: 389 PSSCL 393

[Close]

BLAST of Cla001441 vs. NCBI nr
Match: gi|659121214|ref|XP_008460550.1| (PREDICTED: polygalacturonase-like [Cucumis melo])

HSP 1 Score: 642.9 bits (1657), Expect = 3.5e-181
Identity = 305/372 (81.99%), Postives = 340/372 (91.40%), Query Frame = 1


Query: 1   MVAGLTFDIVSLGAKPDGKTDASPALQTAWDNACGSSKPATIYVPPGVFYVQNGRFNGPC 60
           + AG TF+IVSLGAK DG TDASPA Q AW NACGSS+PATIYVP G FYV +G F GPC
Sbjct: 21  LAAGSTFNIVSLGAKADGMTDASPAFQEAWANACGSSEPATIYVPNGAFYVHSGNFTGPC 80

Query: 61  KNNDITILINGTLMASSDIQALAKTETWIAFKHINGLSISGGVLDGQGIGLWECKHSGKS 120
           KNN ITILINGTLMASS+IQ LA+++ WIAF+HINGLSI GGV+DGQG+GLW CKHSG+S
Sbjct: 81  KNNAITILINGTLMASSNIQVLAQSQAWIAFRHINGLSIYGGVIDGQGMGLWNCKHSGQS 140

Query: 121 CPDGATNLEILNAQNVKVSGLSSVNSQMFNIVVYGCQNVQIQGVNVSAPGDSPNTDGIHV 180
           CPDGAT+LEI ++QNV V+GLSSVNSQMFNIVVYGCQNVQIQGVNVS+  DSPNTDGIHV
Sbjct: 141 CPDGATSLEIFDSQNVNVNGLSSVNSQMFNIVVYGCQNVQIQGVNVSSASDSPNTDGIHV 200

Query: 181 QQSLNVAILDSSIGTGDDCISIGPGTTNLWIENIKCGPGHGISIGSLGKEAEEAGVQNVT 240
           QQSLNV I +S+IGTGDDCISIGPGTTNLW+ENI CGPGHGISIGSLGK+AEEAGVQNVT
Sbjct: 201 QQSLNVNISNSNIGTGDDCISIGPGTTNLWMENINCGPGHGISIGSLGKQAEEAGVQNVT 260

Query: 241 VTTATFTGTQNGVRIKSWGRPSDGFATKVLFQHILFNDVSNPLFIDQDYCPNHQSCPGQA 300
           VTTATF GTQNGVRIKSWGRPSDGFATK+LFQHILF +VSNP+FIDQ+YCP+ QSCPGQA
Sbjct: 261 VTTATFRGTQNGVRIKSWGRPSDGFATKILFQHILFYNVSNPIFIDQNYCPHQQSCPGQA 320

Query: 301 SGIKVSDVTYQDMHGTSATEVAINFNCSPSNPCTGLRLEDIKLTYNNQIPQASCKNAQGT 360
           SG+K+SDVTYQD++GTSATEVAINF+CSPSNPCTG+ LEDI L YN+QIPQASC+NAQGT
Sbjct: 321 SGVKISDVTYQDINGTSATEVAINFDCSPSNPCTGIHLEDINLNYNDQIPQASCENAQGT 380

Query: 361 ASGLVQPPSCLA 373
           ASG +QP SCLA
Sbjct: 381 ASGPLQPRSCLA 392

[Close]

BLAST of Cla001441 vs. NCBI nr
Match: gi|449445220|ref|XP_004140371.1| (PREDICTED: polygalacturonase [Cucumis sativus])

HSP 1 Score: 629.4 bits (1622), Expect = 4.0e-177
Identity = 297/372 (79.84%), Postives = 339/372 (91.13%), Query Frame = 1


Query: 1   MVAGLTFDIVSLGAKPDGKTDASPALQTAWDNACGSSKPATIYVPPGVFYVQNGRFNGPC 60
           + AG TF+IVSLGA  DGKTDAS A Q AW NACGSS+PATIYVP G FY+Q+G F+GPC
Sbjct: 21  LAAGSTFNIVSLGAIADGKTDASHAFQEAWANACGSSEPATIYVPNGAFYIQSGNFSGPC 80

Query: 61  KNNDITILINGTLMASSDIQALAKTETWIAFKHINGLSISGGVLDGQGIGLWECKHSGKS 120
           KNN ITI+INGTL+ASS+IQ LA+++ WIAF+ INGLSI GGV+DGQGIGLW CKHSGKS
Sbjct: 81  KNNAITIVINGTLIASSNIQVLAQSQAWIAFRQINGLSIYGGVIDGQGIGLWNCKHSGKS 140

Query: 121 CPDGATNLEILNAQNVKVSGLSSVNSQMFNIVVYGCQNVQIQGVNVSAPGDSPNTDGIHV 180
           CPDGATNLEI +AQNV V+GLSS+NSQMFNIVVYGC+NVQIQGVNVS+ GDSPNTDGIHV
Sbjct: 141 CPDGATNLEISHAQNVNVNGLSSINSQMFNIVVYGCENVQIQGVNVSSAGDSPNTDGIHV 200

Query: 181 QQSLNVAILDSSIGTGDDCISIGPGTTNLWIENIKCGPGHGISIGSLGKEAEEAGVQNVT 240
           QQSLNV I  +SIGTGDDCISIGPGTTNLW+ENIKCGPGHGISIGSLG++ EEAGV+NVT
Sbjct: 201 QQSLNVNISSTSIGTGDDCISIGPGTTNLWMENIKCGPGHGISIGSLGRQVEEAGVENVT 260

Query: 241 VTTATFTGTQNGVRIKSWGRPSDGFATKVLFQHILFNDVSNPLFIDQDYCPNHQSCPGQA 300
           VTTATFTGTQNGVRIKSWGRPS+ FA K+LFQHI F +V+NP+ IDQ+YCPN+Q CPGQA
Sbjct: 261 VTTATFTGTQNGVRIKSWGRPSNAFANKILFQHIRFYNVNNPILIDQNYCPNNQGCPGQA 320

Query: 301 SGIKVSDVTYQDMHGTSATEVAINFNCSPSNPCTGLRLEDIKLTYNNQIPQASCKNAQGT 360
           SG+KVSDVTYQD++GTSA+EVAINF+CSP+NPCTG+ LEDI+LTYNNQIP+ASCKNA+GT
Sbjct: 321 SGVKVSDVTYQDVNGTSASEVAINFDCSPTNPCTGITLEDIQLTYNNQIPKASCKNARGT 380

Query: 361 ASGLVQPPSCLA 373
           ASG +QP SCLA
Sbjct: 381 ASGPLQPRSCLA 392

[Close]

BLAST of Cla001441 vs. NCBI nr
Match: gi|525327313|gb|AGR44470.1| (polygalacturonase 2 [Pyrus x bretschneideri])

HSP 1 Score: 533.9 bits (1374), Expect = 2.3e-148
Identity = 248/368 (67.39%), Postives = 292/368 (79.35%), Query Frame = 1


Query: 3   AGLTFDIVSLGAKPDGKTDASPALQTAWDNACGSSKPATIYVPPGVFYVQNGRFNGPCKN 62
           A +TF + SLGAK DG TD++ A  +AW NAC S  PA IYVP G F + N  F+GPCKN
Sbjct: 30  AAVTFSVSSLGAKADGSTDSTKAFLSAWSNACASVNPAVIYVPAGRFLLSNAVFSGPCKN 89

Query: 63  NDITILINGTLMASSDIQALAKTETWIAFKHINGLSISGGVLDGQGIGLWECKHSGKSCP 122
           N IT  I GTL+A SD Q +     W+ F+H+NG++ISGGVLDGQG GLW+CK SGKSCP
Sbjct: 90  NAITFRIAGTLVAPSDYQVIGNAGNWLLFQHVNGVTISGGVLDGQGTGLWDCKSSGKSCP 149

Query: 123 DGATNLEILNAQNVKVSGLSSVNSQMFNIVVYGCQNVQIQGVNVSAPGDSPNTDGIHVQQ 182
            GAT L   N+ NV VSGL S+NSQMF+IVV GCQNV++QGV V+A G+SPNTDGIHVQ 
Sbjct: 150 SGATTLSFSNSNNVVVSGLVSLNSQMFHIVVNGCQNVKMQGVKVNAAGNSPNTDGIHVQM 209

Query: 183 SLNVAILDSSIGTGDDCISIGPGTTNLWIENIKCGPGHGISIGSLGKEAEEAGVQNVTVT 242
           S  V ILDS I TGDDC+S+GPGTTNLWIEN+ CGPGHGISIGSLGK+ +EAGVQNVTV 
Sbjct: 210 SSGVTILDSKISTGDDCVSVGPGTTNLWIENVACGPGHGISIGSLGKDQQEAGVQNVTVK 269

Query: 243 TATFTGTQNGVRIKSWGRPSDGFATKVLFQHILFNDVSNPLFIDQDYCPNHQSCPGQASG 302
           T TFTGT+NGVRIKSWGRPS GFA  +LFQHI+  +V NP+ IDQ+YCPN + CPGQASG
Sbjct: 270 TITFTGTENGVRIKSWGRPSTGFARSILFQHIVMTNVQNPIIIDQNYCPNDKGCPGQASG 329

Query: 303 IKVSDVTYQDMHGTSATEVAINFNCSPSNPCTGLRLEDIKLTYNNQIPQASCKNAQGTAS 362
           +KVSDVTYQD+HGTSATEVA+ F+CS   PC G+RL+D+KLTYNNQ  +ASC +A GT +
Sbjct: 330 VKVSDVTYQDIHGTSATEVAVKFDCSSMYPCNGIRLQDVKLTYNNQAAEASCIHAGGTTA 389

Query: 363 GLVQPPSC 371
           G VQP SC
Sbjct: 390 GTVQPTSC 397

[Close]

BLAST of Cla001441 vs. NCBI nr
Match: gi|354549145|gb|AER27668.1| (polygalacturonase [Pyrus pyrifolia])

HSP 1 Score: 533.5 bits (1373), Expect = 3.0e-148
Identity = 248/368 (67.39%), Postives = 292/368 (79.35%), Query Frame = 1


Query: 3   AGLTFDIVSLGAKPDGKTDASPALQTAWDNACGSSKPATIYVPPGVFYVQNGRFNGPCKN 62
           A +TF + SLGAK DG TD++ A  +AW NAC S  PA IYVP G F + N  F+GPCKN
Sbjct: 30  AAVTFSVSSLGAKADGSTDSTKAFLSAWSNACASVNPAVIYVPAGRFLLGNAVFSGPCKN 89

Query: 63  NDITILINGTLMASSDIQALAKTETWIAFKHINGLSISGGVLDGQGIGLWECKHSGKSCP 122
           N IT  I GTL+A SD Q +     W+ F+H+NG++ISGGVLDGQG GLW+CK SGKSCP
Sbjct: 90  NAITFRIAGTLVAPSDYQVIGNAGNWLLFQHVNGVTISGGVLDGQGTGLWDCKSSGKSCP 149

Query: 123 DGATNLEILNAQNVKVSGLSSVNSQMFNIVVYGCQNVQIQGVNVSAPGDSPNTDGIHVQQ 182
            GAT L   N+ NV VSGL S+NSQMF+IVV GCQNV++QGV V+A G+SPNTDGIHVQ 
Sbjct: 150 SGATTLSFSNSNNVVVSGLISLNSQMFHIVVNGCQNVKMQGVKVNAAGNSPNTDGIHVQM 209

Query: 183 SLNVAILDSSIGTGDDCISIGPGTTNLWIENIKCGPGHGISIGSLGKEAEEAGVQNVTVT 242
           S  V ILDS I TGDDC+S+GPGTTNLWIEN+ CGPGHGISIGSLGK+ +EAGVQNVTV 
Sbjct: 210 SSGVTILDSKISTGDDCVSVGPGTTNLWIENVACGPGHGISIGSLGKDQQEAGVQNVTVK 269

Query: 243 TATFTGTQNGVRIKSWGRPSDGFATKVLFQHILFNDVSNPLFIDQDYCPNHQSCPGQASG 302
           T TFTGT+NGVRIKSWGRPS GFA  +LFQHI+  +V NP+ IDQ+YCPN + CPGQASG
Sbjct: 270 TVTFTGTENGVRIKSWGRPSTGFARSILFQHIIMTNVQNPIVIDQNYCPNDKGCPGQASG 329

Query: 303 IKVSDVTYQDMHGTSATEVAINFNCSPSNPCTGLRLEDIKLTYNNQIPQASCKNAQGTAS 362
           +KVSDVTYQD+HGTSATEVA+ F+CS   PC G+RL+D+KLTYNNQ  +ASC +A GT +
Sbjct: 330 VKVSDVTYQDIHGTSATEVAVKFDCSSMYPCNGIRLQDVKLTYNNQAAEASCIHAGGTTA 389

Query: 363 GLVQPPSC 371
           G VQP SC
Sbjct: 390 GTVQPTSC 397

[Close]

BLAST of Cla001441 vs. NCBI nr
Match: gi|51507375|emb|CAH18935.1| (polygalacturonase [Pyrus communis])

HSP 1 Score: 531.6 bits (1368), Expect = 1.1e-147
Identity = 247/368 (67.12%), Postives = 292/368 (79.35%), Query Frame = 1


Query: 3   AGLTFDIVSLGAKPDGKTDASPALQTAWDNACGSSKPATIYVPPGVFYVQNGRFNGPCKN 62
           A +TF + SLGAK DG TD++ A  +AW NAC S  PA IYVP G F + N  F+GPCKN
Sbjct: 30  AAVTFSVSSLGAKADGSTDSTKAFLSAWSNACASVNPAVIYVPAGRFLLGNAVFSGPCKN 89

Query: 63  NDITILINGTLMASSDIQALAKTETWIAFKHINGLSISGGVLDGQGIGLWECKHSGKSCP 122
           N IT  I GTL+A SD + +     W+ F+H+NG++ISGGVLDGQG GLW+CK SGKSCP
Sbjct: 90  NAITFRIAGTLVAPSDYRVIGNAGNWLLFQHVNGVTISGGVLDGQGTGLWDCKSSGKSCP 149

Query: 123 DGATNLEILNAQNVKVSGLSSVNSQMFNIVVYGCQNVQIQGVNVSAPGDSPNTDGIHVQQ 182
            GAT L   N+ NV VSGL S+NSQMF+IVV GCQNV++QGV V+A G+SPNTDGIHVQ 
Sbjct: 150 SGATTLSFSNSNNVVVSGLISLNSQMFHIVVNGCQNVKMQGVKVNAAGNSPNTDGIHVQM 209

Query: 183 SLNVAILDSSIGTGDDCISIGPGTTNLWIENIKCGPGHGISIGSLGKEAEEAGVQNVTVT 242
           S  V ILDS I TGDDC+S+GPGTTNLWIEN+ CGPGHGISIGSLGK+ +EAGVQNVTV 
Sbjct: 210 SSGVTILDSKISTGDDCVSVGPGTTNLWIENVACGPGHGISIGSLGKDQQEAGVQNVTVK 269

Query: 243 TATFTGTQNGVRIKSWGRPSDGFATKVLFQHILFNDVSNPLFIDQDYCPNHQSCPGQASG 302
           T TFTGT+NGVRIKSWGRPS GFA  +LFQHI+  +V NP+ IDQ+YCPN + CPGQASG
Sbjct: 270 TVTFTGTENGVRIKSWGRPSTGFARSILFQHIVMTNVQNPIVIDQNYCPNDKGCPGQASG 329

Query: 303 IKVSDVTYQDMHGTSATEVAINFNCSPSNPCTGLRLEDIKLTYNNQIPQASCKNAQGTAS 362
           +KVSDVTYQD+HGTSATEVA+ F+CS   PC G+RL+D+KLTYNNQ  +ASC +A GT +
Sbjct: 330 VKVSDVTYQDIHGTSATEVAVKFDCSSMYPCNGIRLQDVKLTYNNQAAEASCIHAGGTTA 389

Query: 363 GLVQPPSC 371
           G VQP SC
Sbjct: 390 GTVQPTSC 397

The following BLAST results are available for this feature:

BLAST of Cla001441 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PGLR_PRUPE	5.6e-139	62.23	Polygalacturonase OS=Prunus persica PE=2 SV=1	[more]
PGLR6_ARATH	6.7e-108	52.45	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 S...	[more]
PGLR3_MAIZE	1.7e-79	42.36	Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1	[more]
PGLR2_MAIZE	2.1e-77	41.29	Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1	[more]
PGLR1_MAIZE	1.0e-76	40.75	Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1	[more]

BLAST of Cla001441 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN91_CUCSA	2.8e-177	79.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409610 PE=3 SV=1	[more]
S5MMR8_9ROSA	1.6e-148	67.39	Polygalacturonase 2 OS=Pyrus x bretschneideri GN=PG2 PE=2 SV=1	[more]
G8FU52_PYRPY	2.1e-148	67.39	Polygalacturonase OS=Pyrus pyrifolia GN=PG2 PE=2 SV=1	[more]
Q68UW1_PYRCO	7.9e-148	67.12	Polygalacturonase OS=Pyrus communis GN=pg2 PE=2 SV=1	[more]
B9SSX1_RICCO	8.7e-147	66.03	Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1267820 PE=3 SV=1	[more]

BLAST of Cla001441 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121214\|ref\|XP_008460550.1\|	3.5e-181	81.99	PREDICTED: polygalacturonase-like [Cucumis melo]	[more]
gi\|449445220\|ref\|XP_004140371.1\|	4.0e-177	79.84	PREDICTED: polygalacturonase [Cucumis sativus]	[more]
gi\|525327313\|gb\|AGR44470.1\|	2.3e-148	67.39	polygalacturonase 2 [Pyrus x bretschneideri]	[more]
gi\|354549145\|gb\|AER27668.1\|	3.0e-148	67.39	polygalacturonase [Pyrus pyrifolia]	[more]
gi\|51507375\|emb\|CAH18935.1\|	1.1e-147	67.12	polygalacturonase [Pyrus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000743	Glyco_hydro_28
IPR006626	PbH1
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0004650	polygalacturonase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071555	cell wall organization
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0047911	galacturan 1,4-alpha-galacturonidase activity
molecular_function	GO:0004650	polygalacturonase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001441	Cla001441.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 34..361 score: 7.4
IPR000743	Glycoside hydrolase, family 28	PROSITE	PS00502	POLYGALACTURONASE	coord: 213..226 scor
IPR006626	Parallel beta-helix repeat	SMART	SM00710	pbh1	coord: 183..204 score: 3200.0coord: 300..340 score: 6900.0coord: 206..226 score: 3500.0coord: 156..182 score: 9.1coord: 236..257 score:
IPR011050	Pectin lyase fold/virulence factor	unknown	SSF51126	Pectin lyase-like	coord: 4..371 score: 3.44E
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 6..371 score: 2.9E
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 6..371 score: 2.5E
None	No IPR available	PANTHER	PTHR31375:SF2	POLYGALACTURONASE/PECTINASE	coord: 6..371 score: 2.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001441	Cla97C09G176970	Watermelon (97103) v2	wmwmbB044
Cla001441	ClCG09G014730	Watermelon (Charleston Gray)	wcgwmB010

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001441	Cucurbita moschata (Rifu)	cmowmB074