Cla001416 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001416
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Poly(ADP-ribose) glycohydrolase (AHRD V1 ***- Q0ZCE0_POPTR); contains Interpro domain(s) IPR007724 Poly(ADP-ribose) glycohydrolase
Location	Chr6 : 15961263 .. 15961962 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAAGTCTTCTCGGTGAATACCCTTCATTCTTATCTTTATAATCATATATTTTACAATGCTTTCTGAATTCAACAGGGAAGTCAATAAGGCATTCTGTGGTTTCTTCGATCAATCAAAATTTAATCAGTATGAGAGTCTATTCTTAGAAAGTGGGGAAGATGTCACGGACCATACTGACACGTCAAGAAACAATCTCCCGGTAAAATTTCTTTCTTTTTTGTTTTGTATTTTGACATTATACTCAAATGATAAGTTAAGAACCTTATAGTTAGGATAATGATCATAATTAGCACTCTTAGATGATCCCCATTTTAAGTTTAGTTTCAAACTTTCTTATTAAAATGATTTTTCGTTACAACATGCTTTATGCTCATCAAATGCACATAAATTATTTGTTCTCCTGTTCCTAGTTTGCTTGCTTGGGTTTCTTCTTTATGGTGCTATTATTTTAGGTGCATGAATCTACCTCGGATAGTAGAGAGAATTATTTTGGTACATCTCTCACTCCAGAACGCTTGGATCACAAAGATGATATTGGGATTGCAACAGGCAATTGGGGTTGTGGTGCCTTTGGAGGAGATCCTCAAGTGAAGTCCATAATACAATGGCTTGCTGCTTCTCAGGTACCTTTCAAGTGTTTGTATGATTCCACATGCACAACATATTTCATAAGGGTAGTGATAAATAGCCTTTGA

mRNA sequence

ATGTGGAAGTCTTCTCGGGAAGTCAATAAGGCATTCTGTGGTTTCTTCGATCAATCAAAATTTAATCAGTATGAGAGTCTATTCTTAGAAAGTGGGGAAGATGTCACGGACCATACTGACACGTCAAGAAACAATCTCCCGGTGCATGAATCTACCTCGGATAGTAGAGAGAATTATTTTGGTACATCTCTCACTCCAGAACGCTTGGATCACAAAGATGATATTGGGATTGCAACAGGCAATTGGGGTTGTGGTGCCTTTGGAGGAGATCCTCAAGTGAAGTCCATAATACAATGGCTTGCTGCTTCTCAGGTACCTTTCAAGTGTTTGTATGATTCCACATGCACAACATATTTCATAAGGGTAGTGATAAATAGCCTTTGA

Coding sequence (CDS)

ATGTGGAAGTCTTCTCGGGAAGTCAATAAGGCATTCTGTGGTTTCTTCGATCAATCAAAATTTAATCAGTATGAGAGTCTATTCTTAGAAAGTGGGGAAGATGTCACGGACCATACTGACACGTCAAGAAACAATCTCCCGGTGCATGAATCTACCTCGGATAGTAGAGAGAATTATTTTGGTACATCTCTCACTCCAGAACGCTTGGATCACAAAGATGATATTGGGATTGCAACAGGCAATTGGGGTTGTGGTGCCTTTGGAGGAGATCCTCAAGTGAAGTCCATAATACAATGGCTTGCTGCTTCTCAGGTACCTTTCAAGTGTTTGTATGATTCCACATGCACAACATATTTCATAAGGGTAGTGATAAATAGCCTTTGA

Protein sequence

MWKSSREVNKAFCGFFDQSKFNQYESLFLESGEDVTDHTDTSRNNLPVHESTSDSRENYFGTSLTPERLDHKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQVPFKCLYDSTCTTYFIRVVINSL

Homology

[Close]

BLAST of Cla001416 vs. Swiss-Prot
Match: PARG1_ARATH (Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1 PE=1 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-15
Identity = 48/124 (38.71%), Postives = 67/124 (54.03%), Query Frame = 1


Query: 6   REVNKAFCGFFDQSKFNQYESLFLESGEDV--------------TDHTDTSRNNLPVHES 65
           RE+NKA CGF + SK  +++++F++ G++               T+ T + R  L   E 
Sbjct: 360 REINKALCGFLNCSKAWEHQNIFMDEGDNEIQLVRNGRDSGLLRTETTASHRTPLNDVEM 419

Query: 66  TSDSRENYFGTSLTPERLDHKD--DIGIATGNWGCGAFGGDPQVKSIIQWLAASQV--PF 112
             +   N        E +D++D  D G+ATGNWGCG FGGDP++K+ IQWLAASQ   PF
Sbjct: 420 NREKPANNLIRDFYVEGVDNEDHEDDGVATGNWGCGVFGGDPELKATIQWLAASQTRRPF 479

[Close]

BLAST of Cla001416 vs. Swiss-Prot
Match: PARG2_ARATH (Probable poly(ADP-ribose) glycohydrolase 2 OS=Arabidopsis thaliana GN=PARG2 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-13
Identity = 47/109 (43.12%), Postives = 61/109 (55.96%), Query Frame = 1


Query: 6   REVNKAFCGFFDQSKFNQYESLFLESGEDVTDHTDTSRNNLPVHESTSDSRENYFGTSLT 65
           REVNKAF G+  Q K+N           DV    + S +++P+   TSDS      +S  
Sbjct: 371 REVNKAFSGYMHQCKYNI----------DVKHDPEASSSHVPL---TSDSASQVIESSHR 430

Query: 66  PERLDH-KDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQV--PFKCLY 112
              +DH +  IG+ATGNWGCG FGGDP++K ++QWLA SQ   PF   Y
Sbjct: 431 -WCIDHEEKKIGVATGNWGCGVFGGDPELKIMLQWLAISQSGRPFMSYY 465

[Close]

BLAST of Cla001416 vs. TrEMBL
Match: A0A0A0LNA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123570 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 8.6e-46
Identity = 88/99 (88.89%), Postives = 95/99 (95.96%), Query Frame = 1


Query: 6   REVNKAFCGFFDQSKFNQYESLFLESGEDVTDHTDTSRNNLPVHESTSDSRENYFGTSLT 65
           REVNKAFCGFF+QSK+NQYESLFLESGEDVT+HTD SRN+LPVHES SD+REN+ GTSLT
Sbjct: 251 REVNKAFCGFFNQSKYNQYESLFLESGEDVTNHTDKSRNSLPVHESISDARENFLGTSLT 310

Query: 66  PERLDHKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQ 105
           PE LDHKDDIGIATGNWGCGAFGGDP+VKSIIQWLAASQ
Sbjct: 311 PESLDHKDDIGIATGNWGCGAFGGDPEVKSIIQWLAASQ 349

[Close]

BLAST of Cla001416 vs. TrEMBL
Match: M5VQA0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004452mg PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-23
Identity = 66/123 (53.66%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 6   REVNKAFCGFFDQSKFNQYESLFLESG-------EDVTDHTDTSRNNLPVHESTSDSREN 65
           RE NKAFCGFF QSK+ QY+ LF ESG        DV D  D   NNL  H ++  S E 
Sbjct: 375 RENNKAFCGFFHQSKYQQYKRLFRESGCSGIQPHSDVKDSNDVFSNNLLSHGASITSVET 434

Query: 66  YFGTSLTPE--------RLDHKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQV--PFK 112
             G S+            LD++DD+GIATGNWGCGAFGGDP+VK+IIQWLAASQ   PF 
Sbjct: 435 CGGKSVHKVIRDSEEILSLDNEDDVGIATGNWGCGAFGGDPEVKTIIQWLAASQALRPFI 494

[Close]

BLAST of Cla001416 vs. TrEMBL
Match: W9RGD8_9ROSA (Poly(ADP-ribose) glycohydrolase 1 OS=Morus notabilis GN=L484_009352 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 1


Query: 6   REVNKAFCGFFDQSKFNQYESLFLESG-------EDVTDHTDTSRNNLPVHESTSDSREN 65
           RE NKAFCGF DQSK++QYE LFL++G       +D  D   T RN+  V+E+ S   E 
Sbjct: 369 RETNKAFCGFIDQSKYHQYERLFLKNGLSENQHDQDGKDPDCTKRNSHGVNEANSPLVEA 428

Query: 66  YFGTSLTPERLD----------HKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQV--P 112
           Y G  +     D          ++D++GIATGNWGCGAFGGDP++K+IIQWLAASQ   P
Sbjct: 429 YGGEFVNRAMKDSQQKGCQSLVNEDNMGIATGNWGCGAFGGDPELKTIIQWLAASQALRP 488

[Close]

BLAST of Cla001416 vs. TrEMBL
Match: V4VQK9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019560mg PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.6e-21
Identity = 63/120 (52.50%), Postives = 77/120 (64.17%), Query Frame = 1


Query: 6   REVNKAFCGFFDQSKFNQYESLFLESG-------EDVTDHTDTSRNNLPVHESTSDSREN 65
           RE NKAFCGF DQSK+ QY+ LF   G        D  DHT  SRN+L ++E++S + E 
Sbjct: 372 RETNKAFCGFIDQSKYCQYKGLFQVKGLHEAHLYPDENDHT--SRNHLELNEASSTTVET 431

Query: 66  YFGTSLTPERLDH-----KDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQV--PFKCLY 112
             G S++   L +     KD  GIATGNWGCGAFGGDP++K+IIQWLAASQ   PF   Y
Sbjct: 432 NQGASVSLPALGNSDGEGKDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFILYY 489

[Close]

BLAST of Cla001416 vs. TrEMBL
Match: V4T4W3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019560mg PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.6e-21
Identity = 63/120 (52.50%), Postives = 77/120 (64.17%), Query Frame = 1


Query: 6   REVNKAFCGFFDQSKFNQYESLFLESG-------EDVTDHTDTSRNNLPVHESTSDSREN 65
           RE NKAFCGF DQSK+ QY+ LF   G        D  DHT  SRN+L ++E++S + E 
Sbjct: 240 RETNKAFCGFIDQSKYCQYKGLFQVKGLHEAHLYPDENDHT--SRNHLELNEASSTTVET 299

Query: 66  YFGTSLTPERLDH-----KDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQV--PFKCLY 112
             G S++   L +     KD  GIATGNWGCGAFGGDP++K+IIQWLAASQ   PF   Y
Sbjct: 300 NQGASVSLPALGNSDGEGKDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFILYY 357

[Close]

BLAST of Cla001416 vs. NCBI nr
Match: gi|659082103|ref|XP_008441672.1| (PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-46
Identity = 93/108 (86.11%), Postives = 97/108 (89.81%), Query Frame = 1


Query: 6   REVNKAFCGFFDQSKFNQYESLFLESGEDVTDHTDTSRNNLPVHESTSDSRENYFGTSLT 65
           REVNKAFCGFFDQSK++ Y+S FLESGEDVTDHTDTSRNNLPVHES SD+RENYFG SLT
Sbjct: 357 REVNKAFCGFFDQSKYDHYKSQFLESGEDVTDHTDTSRNNLPVHESISDARENYFGRSLT 416

Query: 66  PERLDHKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQV--PFKCLY 112
           PE LDHKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQ   PF   Y
Sbjct: 417 PECLDHKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQALRPFVMYY 464

[Close]

BLAST of Cla001416 vs. NCBI nr
Match: gi|659082095|ref|XP_008441668.1| (PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-46
Identity = 93/108 (86.11%), Postives = 97/108 (89.81%), Query Frame = 1


Query: 6   REVNKAFCGFFDQSKFNQYESLFLESGEDVTDHTDTSRNNLPVHESTSDSRENYFGTSLT 65
           REVNKAFCGFFDQSK++ Y+S FLESGEDVTDHTDTSRNNLPVHES SD+RENYFG SLT
Sbjct: 379 REVNKAFCGFFDQSKYDHYKSQFLESGEDVTDHTDTSRNNLPVHESISDARENYFGRSLT 438

Query: 66  PERLDHKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQV--PFKCLY 112
           PE LDHKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQ   PF   Y
Sbjct: 439 PECLDHKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQALRPFVMYY 486

[Close]

BLAST of Cla001416 vs. NCBI nr
Match: gi|659082107|ref|XP_008441675.1| (PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X4 [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-46
Identity = 93/108 (86.11%), Postives = 97/108 (89.81%), Query Frame = 1


Query: 6   REVNKAFCGFFDQSKFNQYESLFLESGEDVTDHTDTSRNNLPVHESTSDSRENYFGTSLT 65
           REVNKAFCGFFDQSK++ Y+S FLESGEDVTDHTDTSRNNLPVHES SD+RENYFG SLT
Sbjct: 313 REVNKAFCGFFDQSKYDHYKSQFLESGEDVTDHTDTSRNNLPVHESISDARENYFGRSLT 372

Query: 66  PERLDHKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQV--PFKCLY 112
           PE LDHKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQ   PF   Y
Sbjct: 373 PECLDHKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQALRPFVMYY 420

[Close]

BLAST of Cla001416 vs. NCBI nr
Match: gi|659082105|ref|XP_008441673.1| (PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X3 [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-46
Identity = 93/108 (86.11%), Postives = 97/108 (89.81%), Query Frame = 1


Query: 6   REVNKAFCGFFDQSKFNQYESLFLESGEDVTDHTDTSRNNLPVHESTSDSRENYFGTSLT 65
           REVNKAFCGFFDQSK++ Y+S FLESGEDVTDHTDTSRNNLPVHES SD+RENYFG SLT
Sbjct: 344 REVNKAFCGFFDQSKYDHYKSQFLESGEDVTDHTDTSRNNLPVHESISDARENYFGRSLT 403

Query: 66  PERLDHKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQV--PFKCLY 112
           PE LDHKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQ   PF   Y
Sbjct: 404 PECLDHKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQALRPFVMYY 451

[Close]

BLAST of Cla001416 vs. NCBI nr
Match: gi|449442353|ref|XP_004138946.1| (PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 1.2e-45
Identity = 88/99 (88.89%), Postives = 95/99 (95.96%), Query Frame = 1


Query: 6   REVNKAFCGFFDQSKFNQYESLFLESGEDVTDHTDTSRNNLPVHESTSDSRENYFGTSLT 65
           REVNKAFCGFF+QSK+NQYESLFLESGEDVT+HTD SRN+LPVHES SD+REN+ GTSLT
Sbjct: 381 REVNKAFCGFFNQSKYNQYESLFLESGEDVTNHTDKSRNSLPVHESISDARENFLGTSLT 440

Query: 66  PERLDHKDDIGIATGNWGCGAFGGDPQVKSIIQWLAASQ 105
           PE LDHKDDIGIATGNWGCGAFGGDP+VKSIIQWLAASQ
Sbjct: 441 PESLDHKDDIGIATGNWGCGAFGGDPEVKSIIQWLAASQ 479

The following BLAST results are available for this feature:

BLAST of Cla001416 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PARG1_ARATH	1.0e-15	38.71	Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1 PE=1 SV=2	[more]
PARG2_ARATH	3.6e-13	43.12	Probable poly(ADP-ribose) glycohydrolase 2 OS=Arabidopsis thaliana GN=PARG2 PE=2...	[more]

BLAST of Cla001416 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNA3_CUCSA	8.6e-46	88.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123570 PE=4 SV=1	[more]
M5VQA0_PRUPE	2.1e-23	53.66	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004452mg PE=4 SV=1	[more]
W9RGD8_9ROSA	1.1e-21	49.60	Poly(ADP-ribose) glycohydrolase 1 OS=Morus notabilis GN=L484_009352 PE=4 SV=1	[more]
V4VQK9_9ROSI	5.6e-21	52.50	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019560mg PE=4 SV=1	[more]
V4T4W3_9ROSI	5.6e-21	52.50	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019560mg PE=4 SV=1	[more]

BLAST of Cla001416 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082103\|ref\|XP_008441672.1\|	1.1e-46	86.11	PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Cucumis melo]	[more]
gi\|659082095\|ref\|XP_008441668.1\|	1.1e-46	86.11	PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X1 [Cucumis melo]	[more]
gi\|659082107\|ref\|XP_008441675.1\|	1.1e-46	86.11	PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X4 [Cucumis melo]	[more]
gi\|659082105\|ref\|XP_008441673.1\|	1.1e-46	86.11	PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X3 [Cucumis melo]	[more]
gi\|449442353\|ref\|XP_004138946.1\|	1.2e-45	88.89	PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007724	Poly_GlycHdrlase

Vocabulary: **Molecular Function**
Term	Definition
GO:0004649	poly(ADP-ribose) glycohydrolase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:1990966	ATP generation from poly-ADP-D-ribose
biological_process	GO:0009225	nucleotide-sugar metabolic process
biological_process	GO:0006282	regulation of DNA repair
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004649	poly(ADP-ribose) glycohydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001416	Cla001416.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007724	Poly(ADP-ribose) glycohydrolase	PANTHER	PTHR12837	POLY ADP-RIBOSE GLYCOHYDROLASE	coord: 69..105 score: 2.3
IPR007724	Poly(ADP-ribose) glycohydrolase	PFAM	PF05028	PARG_cat	coord: 5..108 score: 1.5
None	No IPR available	PANTHER	PTHR12837:SF0	POLY(ADP-RIBOSE) GLYCOHYDROLASE	coord: 69..105 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001416	Cla97C06G119330	Watermelon (97103) v2	wmwmbB406
Cla001416	ClCG06G009800	Watermelon (Charleston Gray)	wcgwmB344
Cla001416	CmoCh15G015200	Cucurbita moschata (Rifu)	cmowmB282
Cla001416	Bhi12G001189	Wax gourd	wgowmB103

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001416	Melon (DHL92) v3.6.1	medwmB429
Cla001416	Cucumber (Chinese Long) v3	cucwmB189
Cla001416	Watermelon (97103) v2	wmwmbB410
Cla001416	Wax gourd	wgowmB108
Cla001416	Cucumber (Gy14) v1	cgywmB491
Cla001416	Cucurbita maxima (Rimu)	cmawmB289
Cla001416	Cucurbita moschata (Rifu)	cmowmB281
Cla001416	Melon (DHL92) v3.5.1	mewmB442
Cla001416	Watermelon (Charleston Gray)	wcgwmB349
Cla001416	Cucumber (Chinese Long) v2	cuwmB177
Cla001416	Cucurbita pepo (Zucchini)	cpewmB199
Cla001416	Cucumber (Gy14) v2	cgybwmB168