Cla001401 (gene) Watermelon (97103) v1

Overview
NameCla001401
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRetrotransposon protein (AHRD V1 ***- E5GCB5_CUCME)
LocationChr2 : 13847841 .. 13848206 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAACAAGTCATTCCCCCATTACGATGACCTCTCCACCATATTTGTGAAAGACAGAGCAGTAGGACGATCAAATGAGGACCCACACGTGATGGCGACGAATGTATTCAAAGAGTTTGAAGATGTGATTCGACTTGGATTGCAGGACTGTCACACACTTGAGGTTCGCCAGACAGAATCACCATTAAATCAAGACGGAATGGATGAAGAGCCAACAGAGCAATCTACAGGTAAAGTGACACATGTCGAGTTATCTCAAGGCAGCAAGAGGAAGAGGCCATCATTCCAAGCTGAAATGATCGACATCATGAGATCAACTGTTGAAATGCAGAACACACACATGAGTAGACTTACATTATGGTAG

mRNA sequence

ATGTGGAACAAGTCATTCCCCCATTACGATGACCTCTCCACCATATTTGTGAAAGACAGAGCAGTAGGACGATCAAATGAGGACCCACACGTGATGGCGACGAATGTATTCAAAGAGTTTGAAGATGTGATTCGACTTGGATTGCAGGACTGTCACACACTTGAGGTTCGCCAGACAGAATCACCATTAAATCAAGACGGAATGGATGAAGAGCCAACAGAGCAATCTACAGGTAAAGTGACACATGTCGAGTTATCTCAAGGCAGCAAGAGGAAGAGGCCATCATTCCAAGCTGAAATGATCGACATCATGAGATCAACTGTTGAAATGCAGAACACACACATGAGTAGACTTACATTATGGTAG

Coding sequence (CDS)

ATGTGGAACAAGTCATTCCCCCATTACGATGACCTCTCCACCATATTTGTGAAAGACAGAGCAGTAGGACGATCAAATGAGGACCCACACGTGATGGCGACGAATGTATTCAAAGAGTTTGAAGATGTGATTCGACTTGGATTGCAGGACTGTCACACACTTGAGGTTCGCCAGACAGAATCACCATTAAATCAAGACGGAATGGATGAAGAGCCAACAGAGCAATCTACAGGTAAAGTGACACATGTCGAGTTATCTCAAGGCAGCAAGAGGAAGAGGCCATCATTCCAAGCTGAAATGATCGACATCATGAGATCAACTGTTGAAATGCAGAACACACACATGAGTAGACTTACATTATGGTAG

Protein sequence

MWNKSFPHYDDLSTIFVKDRAVGRSNEDPHVMATNVFKEFEDVIRLGLQDCHTLEVRQTESPLNQDGMDEEPTEQSTGKVTHVELSQGSKRKRPSFQAEMIDIMRSTVEMQNTHMSRLTLW
Homology
[Close]
BLAST of Cla001401 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 41/119 (34.45%), Postives = 59/119 (49.58%), Query Frame = 1 

Query: 3   NKSFPHYDDLSTIFVKDRAVGRSNEDPHVMATNVFKEFEDVIRLGLQDCHTLEVRQTESP 62
           +KSFP+YDDLS +F KDRA G  +E    + +NV   F D I LG  D H  ++    S 
Sbjct: 123 HKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLG--DSHDEDIPTMYSQ 182

Query: 63  LNQDGMDEEPTEQSTGKVTHVELSQGSKRKRPSFQAEMIDIMRSTVEMQNTHMSRLTLW 122
                 DE    ++         S  SKRKR S + E ++++RS +E  N  +  +  W
Sbjct: 183 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADW 239

[Close]
BLAST of Cla001401 vs. NCBI nr
Match: gi|659113923|ref|XP_008456820.1| (PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06
Identity = 40/119 (33.61%), Postives = 57/119 (47.90%), Query Frame = 1 

Query: 3   NKSFPHYDDLSTIFVKDRAVGRSNEDPHVMATNVFKEFEDVIRLGLQDCHTLEVRQTESP 62
           +KSFP+YDDLS +F  D A G  +E      +NV   F D + LG  D H  ++    S 
Sbjct: 80  HKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLG--DSHNQDILTIYSQ 139

Query: 63  LNQDGMDEEPTEQSTGKVTHVELSQGSKRKRPSFQAEMIDIMRSTVEMQNTHMSRLTLW 122
                +DE    ++         S GSKRKR S   EM++++ S  E  N  +  +T W
Sbjct: 140 GVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDW 196

The following BLAST results are available for this feature:
BLAST of Cla001401 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082641|ref|XP_008441954.1|1.1e-0634.45PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|659113923|ref|XP_008456820.1|2.4e-0633.61PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001401Cla001401.1mRNA