Cla001317 (gene) Watermelon (97103) v1

Overview
NameCla001317
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionHomology to unknown gene (AHRD V1 ***- Q00YR0_OSTTA); contains Interpro domain(s) IPR013105 Tetratricopeptide TPR2
LocationChr10 : 15671344 .. 15677000 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATGGCTACTCTTCCTCTGTTCCACCAGCTCCTCACCCTCTCAAACCCCAAATCAGCCACCATTCTCAGGCCCCGGCTACCCACTTCTCAAAGGACTTTCCACCTCTCCATTCTATGTTGCTCTTCTACTTCTCAGTCTCCAGAAGCTAATCTCCAATCTGCAGAGTCCTCTATCAATATCGGCCTCGAGCTCTTCTCTAAAGGACGGGTGTGCGTTCTCTTTCGATTTGTATTTTCTTGTTTTTTGCGAAATGGGTATTGTTTAATCATTTATTTCGTTTCCACTTGTTCGATTATTTCGGAATTTTAGTTCAGTTTTCTGAGCGTGTTCTTGAATGGTCCTTTTGGTACATATAATTAGAGAATTTGCTGAGTGGTTCTTTTGAGAAACCAGGGCAACTTCTTTGGGATTTTTGGTGGACTTTGGTATGTGTAACTAATGGCTACTTTGACCTTGTATGCCAATGGAGAACCCAGCCAAAAGAAAAGGGGGAAAAAAGGTTGAATTATAAGTTCAGTCCAAGTCTACTTAGTCCATGTACTTTTAGGGTCCCTAAACTTTTATGCTTTTGTCCATTTAGTCCCCAGTGAGATTTTAAAGATGCATTGTAAACTTCTTAAAGTACAGCCACCAATTAGACAGGATGTGCTATCAAGTTTCGAAATCATGGAATAACTTAAATACTTCCACTGTCCTCAGTACAAATTGATCAATCAAAATCTTATAAATTAGGGAAACAAATGCATCATTTTTAGTTTGTTTGGAACAAAGGTATTAGTGATCATGGTTTTGTAGATTAGATGAGGATATTTTGGTATTAGATATGTGAGGGAGAAAGAAGTGGTGAAATGTTAGGAGAAAGACAGTGATGAAGTTACAAAAGGGAAAGTAGAAGAGTCTAAGCCTTTGCATTTTTCAATGAAAAGAAGACAAATGTGATTTCATAGTGGCCTAGAGGGTACTGGGAGGAGGTTTGGATAGTATTAGAGATAATACTTCTTTTTGAGCTGATGTCGCTAAGGATTTTTGTAACAATCAACTAGGTCTTATTCTTTGGATTCGAGTCTCTTCCTACTAGTTTTTGCTTTGACTTCTTTGGGGTTTTTTCATTTTTTTAATATCCTTGTATATTCTTTCATATTTCTCCATGAAAGCTTGGTTTCTCATAAAAATAATAATAAAATAATAGAACCCCAGAGGGTATTAATGGCTGTAAGAGCCATATTTGATATTATTAGTTCTGGAGAGCGCATCAGATATTGAAAGTTTGTTTGCAGTAGAGTCAAAATCTCCTACATTTCCAACAATCTCATTGAGAAATATTGAAGTTTAAAGCCACAAGGCAACTAAGTTTAGTGGAGTTACAAAAATTCCTCCTAATTAGTAGAAATCATAGAGGCTTCAAAGGAAGTTCCCAAATTGAGTCCTTTCTCCTTCCATTTGTTGTCTTTGCCTTAGAGAGGTGTTCAGGTGGAATCGGTGGATCATTTATTATTGCACTGTGAGTTTGCTTATAAAGGGTGGGCTATGCTATTTAATATCTTTGGGTCTAGGGGTGGCTGGTTGTCTTACCTAAGAAGATTGATGAGTGGATGATCGAAGGTATTGATGGTGGTTGCTTTTATGGAAAAGGAAAAATTTTATGGGGATGTGCTACTCGTTCTCTTCTATCATGTCTCTGGAAAGAAAGAAATAGCAGGATGTTTGAGGATAACTTTGCTTCTTTTGATTCTTTTTGGGCTTTTAATCAGCATACAACCTCTTGGTAGTGCACAAATTACACCAAATTCTTTTGTAATTATACCCTTCTAATGATTATTAACAATTGGAGGGCTCTTCTTGATTAGTTTTGTGGGAGGGGTTAACTATACCCCTGCCCTTAGGCTGTCCTTTGTCTCTTTTTGATGAATATACATATCCATTTCTTATAACAAGAAAAAAAAAAAAAAATAGTAGATATCCTAGAAAGGTCAAAGTTACTAAATTCCTTATCCAAAGAACGCCAAGTCAAGGCTACGAGGGAAAAGAAACAGAAAAAAACAATTATTTCTAATTTTGGTCCTTTAACTTCTCTTTATCCGTTGACAATAATGTCATTCTTTTCTTCCTTTTTAGTTTCTTTGATTTTGGCAGAAACCTTTGTGGCCTTTAAGCATCTCTTAGGAATAGTTTTTAACAGTTGCAAGTTGCATCAAATTCAAAGTAAATTTTAGCATCCCTCCCAATGACACCATAAACTTGGGAATAACTAAGTTGTTACTGTATTTTCCTCAACTCTTGCAATCTGATGAGATGCAATAGTGCATCACAGAGCGCCTTTCAAGACTCTTAATTCTTGTGGTCATTTGTATTGTACTATTAAACACTTACGAAAACTTTAGTTTCCTTGATAGTTTTGTTTAATCCCCAAAGATTCATTTTTTTGAGTGGATCAGTGATTATTGATTACAGTCATGTCATATTTCTCCAAAACACTAGCTTCTTTCTTCATTGGCTTCTGATATTTGTTTTCCAGTTTTGTTCCTCAGTAAGTTTGTAAGAAGTGTGTGTACATTTCACAAAACAATGAATATGTCAGGTCAAAGAAGCTTTAGTCCAGTTTGAAGCAGCACTGAATATGGATCCCAACCCAATGGAGGCCCAAGCTGCTTTGTACAATAAAGCATGCTGTCATGCCTATCGGTATGCGTAAAGGTCTCTATTTCTTGCTTATAACATAGCTTCCTTCTTTTCTTTTCTTTTCTTTTCCTTTTTTTTTCAAAAGAAAAATTTAAATGCTATATTTGAAGAATTGCTCATCCTGCATTGATCGAGGTTAATAGACTTAGTTTAATGTCTCCTTTAAGTTGCTTTTAGACTTCTATTATTTATTTCAGATGACCAATTGTGACTTTGTGAATATTTTGAGGTAGTGGGGAAGGAAAGAAAGCCGCTGACTGCCTGCGTGTTGCATTAAGAGAATATAACCTGAAATTTGGCACAATTCTGAACGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGAATTGCAAGAAGAGGTTCGTTGCTCAATGCCCCTCTCTTCATCTTGTAATCCTCATCTTTTTCTTTCATAATCTCCTTGAATATCATAATTTTTTTAACACAAATAGATGACTGTTTAATTAATGGATTCAAAATTACTAATTCAATTATCTTTCTGAATAATGATGGTGTCCAGGCTAGGATGGGTGGAGAGGATATAGGATATGGTTTTCGAAGAGATCTTAAACTCATTAGTGAAGTTCAAGCACCTTTCCGTGGGGTTCGGAGGTTCTTTTATGTGGCACTATCTGCAGCTGCTGGAATTTCGTTGTTGTTTAATATACCCAGGTTAATTCGTGCTATTCAAGGTGGCGATGAAGCTCCTGATGTTTGGGAAACTGCTGGAAATTTAGCTGTTAATGTTGGAGGTACATCTAAATTTGTTATGACTTCCATAGCTCAGTTAAGGGATATAAATATGAAGGTACATGTTCACTATGGTGAGGTAGCTGAAATACTAACTTTCCAATCAGCATTAAACAGGTATTGTTGTGTTTGTGGCATTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAATGAAATATTATCAAGGTTGCCTCTACGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGGTGAGTATGATTATTCATCTTACCCCTTGTTCTAGGGTTGTTCATTCTCTTTCCCCTTCTGATTATTTCACTTGATTTGCCCATTTTGCCTTTGTGTCCCTAACTTGTTGCCATTGGTGGCTTGTCCTTGACCATTTTTGCTGGAATCAACATTTCAGTTATCATTTGTGCTGATTCTTCTTGCTTCTATAACAATTCCCCTACCCCTTCTACTAAGGCTGCTAGTGTTTGTTCAATCTATAAAATCCTCTGGACATACTTTGCAATTTTCCCAGTCGTGCACATCTATTGCTTCAAGTCGGTCATCCATCATGTAAATAATGCTTTTCAGAAGACAAATGAAAGACTGGTGCTACAAGCTATTTTAAGAGACAGGTTCAGAGAGGAACGGAAGGGTTTTGTTGGTACAAGTATATACATGGTGGAAGTTTCTGGAATAGGTTGTTTTTTGTAGCCTCTTTTCAGCCTTCGGCGACTTCCATATTTTGGATATTTATCTATCCCTGATTTTAGCCTAAGAAAACATTTCTTCTCTAAAATTTTTTCTTTTCTTCTCCTGTTGGCTTTAATCACCCAACGCTCTTTGCATGTCCTGTCCTCCATTGAATTTCATGTTTTCAATAAACCAAAGTTAGCTAGTTTGCTTGGAAGAATAGATATTGCCTCTACTTATGTACATTTTTGCATTCCTTAAATTATTACCTTGCAAGTAAGGTCATTTTAGCTGGGAAAAAGGAGACAGTTTCTGCAGCCATTCAAAAGGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGCGTTCTCTTAGTTCCTGTCATATGGGGCCAAGGTAGGGAATCCCAAATAGAAAAGAAAGGATTTGGTGCTCCAGCCACCACTGCTGCTACTGCTCTGCCATCAATTGGGGTAAGTAAGATCAATAGTCTATCTTGTCCTACATTCGTCCAGGATATCTTTTGAAATATGCTGTTGTTTGTTCATGTTCCCGACTAGAAAGCCTGTAAGTTAATCGATAGGTTCTCTTGTTATCATGGAACTCTTGTAGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCAAAATCGAAGTTGAAAGCTGAAATTCGATTCAGGGCTGAGGTTATATCACCTGCAGAATGGGAAAGGTAAATGTGTACGTGTCTAGGGGCATGCTTGCTTCCCATCATCTAATTTTCTTGTCAGTTTATGTAGTGAGCTTTGCTCTCCATCATCTAATCTACTGATATAAAACTAACATGGGGAAAAATCACAACCATTATATCTCTGAACTTTTTTCCCCCTCCTCTAAAGTTGTATTTTTATTTTTAGAGAAAACAGAAACCATCCATTTACATATTGAAATGGAATACAAAAGATGTTCCTATCAGATAACATGCATTCATGGATTATATATTCTAAAGTTGTGTTGTCTCGCCAATATTATGGAGACAATTAAATTATCTGGTTGAATCAATAGGAGGTGGATGTGATATTGTGTTTTCCACTTGGATTATGACTTTTTTTTTTTTTTCCTGAATTAGTTGGATAAGAGACCAGCAGAAATCTGAAGGGGTTACTCCTGGTGAGGATGTCTACATAATATTGCGATTGGATGGTCGAGTTCGAAGATCAGGGAGAGTAAGTTCATATCATGAAAATTATCTACTTTCTAATCAAAACACATATTAGGATGCTTTTCCTTTAATCTTGGAGATCTAAAGCATGTTATCAGTCAACTATTTGATCTAGAATATAGCGCCTTCTTCGTCCTCCAAATGTCCTTGTTCAAGTTTTTTAAAAGCTAAAAAGAATTGTTGAGGATCTTGCAAACTTTTTCCTCATTTTTGGTGATGATATGCAGGGGATGCCTGACTGGCAAAAAATTATTGAAGAGTTACCACCAATGGAAGCTCTTCTTAGCAAGCTAGAAAGATGA

mRNA sequence

ATGGCTATGGCTACTCTTCCTCTGTTCCACCAGCTCCTCACCCTCTCAAACCCCAAATCAGCCACCATTCTCAGGCCCCGGCTACCCACTTCTCAAAGGACTTTCCACCTCTCCATTCTATGTTGCTCTTCTACTTCTCAGTCTCCAGAAGCTAATCTCCAATCTGCAGAGTCCTCTATCAATATCGGCCTCGAGCTCTTCTCTAAAGGACGGGTCAAAGAAGCTTTAGTCCAGTTTGAAGCAGCACTGAATATGGATCCCAACCCAATGGAGGCCCAAGCTGCTTTGTACAATAAAGCATGCTGTCATGCCTATCGTGGGGAAGGAAAGAAAGCCGCTGACTGCCTGCGTGTTGCATTAAGAGAATATAACCTGAAATTTGGCACAATTCTGAACGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGAATTGCAAGAAGAGGCTAGGATGGGTGGAGAGGATATAGGATATGGTTTTCGAAGAGATCTTAAACTCATTAGTGAAGTTCAAGCACCTTTCCGTGGGGTTCGGAGGTTCTTTTATGTGGCACTATCTGCAGCTGCTGGAATTTCGTTGTTGTTTAATATACCCAGGTTAATTCGTGCTATTCAAGGTGGCGATGAAGCTCCTGATGTTTGGGAAACTGCTGGAAATTTAGCTGTTAATGTTGGAGGTATTGTTGTGTTTGTGGCATTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAATGAAATATTATCAAGGTTGCCTCTACGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGGTCATTTTAGCTGGGAAAAAGGAGACAGTTTCTGCAGCCATTCAAAAGGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGCGTTCTCTTAGTTCCTGTCATATGGGGCCAAGGTAGGGAATCCCAAATAGAAAAGAAAGGATTTGGTGCTCCAGCCACCACTGCTGCTACTGCTCTGCCATCAATTGGGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCAAAATCGAAGTTGAAAGCTGAAATTCGATTCAGGGCTGAGGTTATATCACCTGCAGAATGGGAAAGTTGGATAAGAGACCAGCAGAAATCTGAAGGGGTTACTCCTGGTGAGGATGTCTACATAATATTGCGATTGGATGGTCGAGTTCGAAGATCAGGGAGAGGGATGCCTGACTGGCAAAAAATTATTGAAGAGTTACCACCAATGGAAGCTCTTCTTAGCAAGCTAGAAAGATGA

Coding sequence (CDS)

ATGGCTATGGCTACTCTTCCTCTGTTCCACCAGCTCCTCACCCTCTCAAACCCCAAATCAGCCACCATTCTCAGGCCCCGGCTACCCACTTCTCAAAGGACTTTCCACCTCTCCATTCTATGTTGCTCTTCTACTTCTCAGTCTCCAGAAGCTAATCTCCAATCTGCAGAGTCCTCTATCAATATCGGCCTCGAGCTCTTCTCTAAAGGACGGGTCAAAGAAGCTTTAGTCCAGTTTGAAGCAGCACTGAATATGGATCCCAACCCAATGGAGGCCCAAGCTGCTTTGTACAATAAAGCATGCTGTCATGCCTATCGTGGGGAAGGAAAGAAAGCCGCTGACTGCCTGCGTGTTGCATTAAGAGAATATAACCTGAAATTTGGCACAATTCTGAACGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGAATTGCAAGAAGAGGCTAGGATGGGTGGAGAGGATATAGGATATGGTTTTCGAAGAGATCTTAAACTCATTAGTGAAGTTCAAGCACCTTTCCGTGGGGTTCGGAGGTTCTTTTATGTGGCACTATCTGCAGCTGCTGGAATTTCGTTGTTGTTTAATATACCCAGGTTAATTCGTGCTATTCAAGGTGGCGATGAAGCTCCTGATGTTTGGGAAACTGCTGGAAATTTAGCTGTTAATGTTGGAGGTATTGTTGTGTTTGTGGCATTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAATGAAATATTATCAAGGTTGCCTCTACGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGGTCATTTTAGCTGGGAAAAAGGAGACAGTTTCTGCAGCCATTCAAAAGGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGCGTTCTCTTAGTTCCTGTCATATGGGGCCAAGGTAGGGAATCCCAAATAGAAAAGAAAGGATTTGGTGCTCCAGCCACCACTGCTGCTACTGCTCTGCCATCAATTGGGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCAAAATCGAAGTTGAAAGCTGAAATTCGATTCAGGGCTGAGGTTATATCACCTGCAGAATGGGAAAGTTGGATAAGAGACCAGCAGAAATCTGAAGGGGTTACTCCTGGTGAGGATGTCTACATAATATTGCGATTGGATGGTCGAGTTCGAAGATCAGGGAGAGGGATGCCTGACTGGCAAAAAATTATTGAAGAGTTACCACCAATGGAAGCTCTTCTTAGCAAGCTAGAAAGATGA

Protein sequence

MAMATLPLFHQLLTLSNPKSATILRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESSINIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLIRAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNEILSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSAAIQKAERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATTAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER
Homology
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BLAST of Cla001317 vs. Swiss-Prot
Match: LPA1_ARATH (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 PE=1 SV=1)

HSP 1 Score: 603.6 bits (1555), Expect = 1.7e-171
Identity = 314/454 (69.16%), Postives = 366/454 (80.62%), Query Frame = 1 

Query: 1   MAMATLPLF--HQLLTLSNPKSATILR-PRLPTSQRTF---------HLSILCCSSTSQS 60
           MA+AT P    H    +SN  S    R P LP    T          HL +   SS+S S
Sbjct: 1   MAVATAPSLNRHFPRRISNLYSRVKQRRPWLPPGDATLFNSRRNWDSHLFVYASSSSSPS 60

Query: 61  ---PEANLQS----AESSINIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKAC 120
              P  N  +    AE  +N GL+LF +GRVK+ALVQFE AL++ PNP+E+QAA YNKAC
Sbjct: 61  SSPPSPNSPTDDLTAELCVNTGLDLFKRGRVKDALVQFETALSLAPNPIESQAAYYNKAC 120

Query: 121 CHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGY 180
           CHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG 
Sbjct: 121 CHAYRGEGKKAVDCLRIALRDYNLKFATILNDPDLASFRALPEFKELQEEARLGGEDIGD 180

Query: 181 GFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLIRAIQGGDEAPDVWETAG 240
            FRRDLKLISEV+APFRGVR+FFY A +AAAGIS+ F +PRL++AI+GGD AP++ ET G
Sbjct: 181 NFRRDLKLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTG 240

Query: 241 NLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNEILSRLPLRLSTNRIVELVQLRDTVRP 300
           N A+N+GGIVV V+LFLW+NKKEEEQ+ QI+R+E LSRLPLRLSTNR+VELVQLRDTVRP
Sbjct: 241 NAAINIGGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRP 300

Query: 301 VILAGKKETVSAAIQKAERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATTAATAL 360
           VILAGKKETV+ A+QKA+RFRTELLRRGVLLVPV+WG+ +  +IEKKGFGA ++ AAT+L
Sbjct: 301 VILAGKKETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGA-SSKAATSL 360

Query: 361 PSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR 420
           PSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WIRDQQ SEGV PG+DVYIILR
Sbjct: 361 PSIGEDFDTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILR 420

Query: 421 LDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER 436
           LDGRVRRSGRGMPDW +I +ELPPM+ +LSKLER
Sbjct: 421 LDGRVRRSGRGMPDWAEISKELPPMDDVLSKLER 453

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BLAST of Cla001317 vs. TrEMBL
Match: A0A0A0KT96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001650 PE=4 SV=1)

HSP 1 Score: 809.3 bits (2089), Expect = 2.3e-231
Identity = 412/435 (94.71%), Postives = 421/435 (96.78%), Query Frame = 1 

Query: 1   MAMATLPLFHQLLTLSNPKSATILRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESSI 60
           MAMATLPLFH L TLSNPKS TILRPRLPTSQRTF LSIL CSSTSQSPEANLQSAES +
Sbjct: 1   MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCV 60

Query: 61  NIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL 120
           N GL+LFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL
Sbjct: 61  NFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL 120

Query: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180
           REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV
Sbjct: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180

Query: 181 RRFFYVALSAAAGISLLFNIPRLIRAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWD 240
           R+FFYVALSAAAGISLLFNIPRL RAIQGGD APDVWETAGNLAVNVGGI+VFVALFLWD
Sbjct: 181 RKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD 240

Query: 241 NKKEEEQLAQISRNEILSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSAAIQKAER 300
           NKKEEEQLAQISRNE LSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS+AIQKAER
Sbjct: 241 NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER 300

Query: 301 FRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATTAATALPSIGEDFEKRAQSITAKSK 360
           FRTELLRRGVLLVPVIWG+GRE QIEKKGFGAP T AA ALPSIGEDFEKRAQSITAKSK
Sbjct: 301 FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSK 360

Query: 361 LKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII 420
           LKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII
Sbjct: 361 LKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII 420

Query: 421 EELPPMEALLSKLER 436
           EELPPMEALLSKLE+
Sbjct: 421 EELPPMEALLSKLEK 435

[Close]
BLAST of Cla001317 vs. TrEMBL
Match: A0A0D2SCC8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G129100 PE=4 SV=1)

HSP 1 Score: 690.3 bits (1780), Expect = 1.5e-195
Identity = 353/443 (79.68%), Postives = 388/443 (87.58%), Query Frame = 1 

Query: 1   MAMATLPLFHQLLTLSNPKSATILRPRLP------TSQRTFHLSILCCSS--TSQSPEAN 60
           MA+A L L  QLL  S PK     RP  P       SQ+  H+ I+ CSS  TSQSPEAN
Sbjct: 1   MAVAALALNQQLLCFSYPKIRAKSRPWFPQKTTLLNSQKKPHIFIVSCSSSPTSQSPEAN 60

Query: 61  LQSAESSINIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKA 120
           +Q+AES +N+GL LFSKGRVK+ALVQFE AL++DPNP+EAQAALYNKACCHAY+GE KKA
Sbjct: 61  VQTAESCVNLGLSLFSKGRVKDALVQFETALSLDPNPVEAQAALYNKACCHAYQGEAKKA 120

Query: 121 ADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISE 180
           A+CLR ALR+YNLKFGTILNDPDLAS RA PEFKELQEEAR+GGEDIGY FRRDLKLISE
Sbjct: 121 AECLRTALRDYNLKFGTILNDPDLASLRASPEFKELQEEARLGGEDIGYSFRRDLKLISE 180

Query: 181 VQAPFRGVRRFFYVALSAAAGISLLFNIPRLIRAIQGGDEAPDVWETAGNLAVNVGGIVV 240
           VQAPFRGVRRFFYVA SAAAGISLLF +PRL RAI+GGD APD+WET GN  +N+GGI+V
Sbjct: 181 VQAPFRGVRRFFYVAFSAAAGISLLFTVPRLFRAIKGGDGAPDIWETVGNAGINIGGIIV 240

Query: 241 FVALFLWDNKKEEEQLAQISRNEILSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS 300
            VAL+ WDNKKEEEQLAQISRNE LSRLPLRLSTNRIVELVQLRDTVRPVILAGKKE+VS
Sbjct: 241 LVALYFWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKESVS 300

Query: 301 AAIQKAERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATTAATALPSIGEDFEKRA 360
           +A+QKAERFRTELLRRGVLLVPVIWG+GR  Q+EKKGFG  +  AATALPSIGEDFEKRA
Sbjct: 301 SALQKAERFRTELLRRGVLLVPVIWGEGRTPQVEKKGFGV-SKKAATALPSIGEDFEKRA 360

Query: 361 QSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRG 420
           QSITAKSKLKAEIRF+AEVIS  EWE WIRDQQ+SEGVTPGEDVYIILRLDGRVRRSG+G
Sbjct: 361 QSITAKSKLKAEIRFKAEVISLEEWERWIRDQQESEGVTPGEDVYIILRLDGRVRRSGKG 420

Query: 421 MPDWQKIIEELPPMEALLSKLER 436
           MPDW +I++ELPPMEALLSKLER
Sbjct: 421 MPDWSQIVQELPPMEALLSKLER 442

[Close]
BLAST of Cla001317 vs. TrEMBL
Match: D7U260_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g00100 PE=4 SV=1)

HSP 1 Score: 686.0 bits (1769), Expect = 2.9e-194
Identity = 344/434 (79.26%), Postives = 383/434 (88.25%), Query Frame = 1 

Query: 4   ATLPLFHQLLTLSNPKSATILRPRLPTSQRTFHLSILCC--SSTSQSPEANLQSAESSIN 63
           A L + H LL  SNP++ T +  +L   +R + LS  CC  SS+S SPEA+LQ+AES +N
Sbjct: 5   AALAVNHHLLCFSNPRTVTWVPTKLKPQKRAY-LSFTCCTSSSSSTSPEADLQTAESRVN 64

Query: 64  IGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALR 123
           +GL LFS+GRVK+AL QFE AL +DPNPMEAQAALYNKACCHAYRGEGKKAADCLR ALR
Sbjct: 65  LGLSLFSRGRVKDALAQFETALTLDPNPMEAQAALYNKACCHAYRGEGKKAADCLRTALR 124

Query: 124 EYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR 183
           EYNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIGY FRRDLKLISEVQAPFRGVR
Sbjct: 125 EYNLKFSTILNDPDLASFRALPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVR 184

Query: 184 RFFYVALSAAAGISLLFNIPRLIRAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDN 243
           RFFYVA SAAAGIS  F IPRL RAI+GGD APD+WETAGN A+N+GGI+  V LF WDN
Sbjct: 185 RFFYVAFSAAAGISTFFTIPRLFRAIKGGDGAPDIWETAGNAAINIGGIIALVLLFFWDN 244

Query: 244 KKEEEQLAQISRNEILSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSAAIQKAERF 303
           KKEEEQLAQISR+E LSRLPLRLSTNR+VELVQLRDTVRPVILAG KETVS AI+KAERF
Sbjct: 245 KKEEEQLAQISRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGTKETVSLAIKKAERF 304

Query: 304 RTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATTAATALPSIGEDFEKRAQSITAKSKL 363
           RTELL+RGVLLVPVIWG+ +  Q+EKKGFG P + AAT+LPSIGEDFEKR +SI AKS+L
Sbjct: 305 RTELLKRGVLLVPVIWGENKAPQMEKKGFGIP-SKAATSLPSIGEDFEKRTESIAAKSRL 364

Query: 364 KAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIE 423
           KAE+RF+AEV+SPAEWE WIRDQQKSEGVTPGEDVYIILRLDGRVRRSG+GMPDWQ+I++
Sbjct: 365 KAEVRFKAEVVSPAEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVK 424

Query: 424 ELPPMEALLSKLER 436
           ELPPMEALLSKLER
Sbjct: 425 ELPPMEALLSKLER 436

[Close]
BLAST of Cla001317 vs. TrEMBL
Match: A0A0B0NWC9_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_17181 PE=4 SV=1)

HSP 1 Score: 685.6 bits (1768), Expect = 3.8e-194
Identity = 349/443 (78.78%), Postives = 388/443 (87.58%), Query Frame = 1 

Query: 1   MAMATLPLFHQLLTLSNPKSATILRPRLP------TSQRTFHLSILCCSS--TSQSPEAN 60
           MA+A L L  QLL LS PK     RP  P       SQ+  H+ I+ CSS  TSQSPEAN
Sbjct: 1   MAVAALALNRQLLCLSYPKIRAKSRPWFPQKTTLLNSQKKPHIFIVSCSSSPTSQSPEAN 60

Query: 61  LQSAESSINIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKA 120
           +Q+AES +N+GL LFSKGRVK+ALVQFE AL++DPNP+EAQAALYNKACC AY+GE KKA
Sbjct: 61  VQTAESCVNLGLSLFSKGRVKDALVQFETALSLDPNPVEAQAALYNKACCLAYQGEAKKA 120

Query: 121 ADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISE 180
           A+CLR ALR+YNLKFGTILNDPDLAS RA PEFKELQEEAR+GGEDIGY FRRDLKLISE
Sbjct: 121 AECLRTALRDYNLKFGTILNDPDLASLRASPEFKELQEEARLGGEDIGYSFRRDLKLISE 180

Query: 181 VQAPFRGVRRFFYVALSAAAGISLLFNIPRLIRAIQGGDEAPDVWETAGNLAVNVGGIVV 240
           VQAPFRGVRRFFYVA SAAAGISLLF +PRL RAI+GGD A D+WET GN  +N+GGI++
Sbjct: 181 VQAPFRGVRRFFYVAFSAAAGISLLFTVPRLFRAIKGGDGASDIWETVGNTGINIGGIII 240

Query: 241 FVALFLWDNKKEEEQLAQISRNEILSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS 300
            VALF WDNKKEEEQLAQISRNE LSRLPLRLSTNRIVELVQLRDTVRPVILAGKKE+VS
Sbjct: 241 LVALFFWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKESVS 300

Query: 301 AAIQKAERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATTAATALPSIGEDFEKRA 360
           +A+QKAERFR+ELLRRGVLLVPVIWG+GR  Q+EKKGFG  +  AATALPSIGEDFEKRA
Sbjct: 301 SALQKAERFRSELLRRGVLLVPVIWGEGRTPQVEKKGFGV-SKKAATALPSIGEDFEKRA 360

Query: 361 QSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRG 420
           QSITAKSKLKAEIRF+AEV+SP EWE WIRDQQ+SEGVTPGEDVYII+RLDGRVRRSG+G
Sbjct: 361 QSITAKSKLKAEIRFKAEVVSPEEWERWIRDQQESEGVTPGEDVYIIMRLDGRVRRSGKG 420

Query: 421 MPDWQKIIEELPPMEALLSKLER 436
           MPDW +I++ELPPMEALLSK+ER
Sbjct: 421 MPDWSQIVQELPPMEALLSKIER 442

[Close]
BLAST of Cla001317 vs. TrEMBL
Match: A0A0D2TE16_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G129100 PE=4 SV=1)

HSP 1 Score: 683.7 bits (1763), Expect = 1.4e-193
Identity = 353/449 (78.62%), Postives = 388/449 (86.41%), Query Frame = 1 

Query: 1   MAMATLPLFHQLLTLSNPKSATILRPRLP------TSQRTFHLSILCCSS--TSQSPEAN 60
           MA+A L L  QLL  S PK     RP  P       SQ+  H+ I+ CSS  TSQSPEAN
Sbjct: 1   MAVAALALNQQLLCFSYPKIRAKSRPWFPQKTTLLNSQKKPHIFIVSCSSSPTSQSPEAN 60

Query: 61  LQSAESSINIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKA 120
           +Q+AES +N+GL LFSKGRVK+ALVQFE AL++DPNP+EAQAALYNKACCHAY+GE KKA
Sbjct: 61  VQTAESCVNLGLSLFSKGRVKDALVQFETALSLDPNPVEAQAALYNKACCHAYQGEAKKA 120

Query: 121 ADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEE------ARMGGEDIGYGFRRD 180
           A+CLR ALR+YNLKFGTILNDPDLAS RA PEFKELQEE      AR+GGEDIGY FRRD
Sbjct: 121 AECLRTALRDYNLKFGTILNDPDLASLRASPEFKELQEEYLLSFQARLGGEDIGYSFRRD 180

Query: 181 LKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLIRAIQGGDEAPDVWETAGNLAVN 240
           LKLISEVQAPFRGVRRFFYVA SAAAGISLLF +PRL RAI+GGD APD+WET GN  +N
Sbjct: 181 LKLISEVQAPFRGVRRFFYVAFSAAAGISLLFTVPRLFRAIKGGDGAPDIWETVGNAGIN 240

Query: 241 VGGIVVFVALFLWDNKKEEEQLAQISRNEILSRLPLRLSTNRIVELVQLRDTVRPVILAG 300
           +GGI+V VAL+ WDNKKEEEQLAQISRNE LSRLPLRLSTNRIVELVQLRDTVRPVILAG
Sbjct: 241 IGGIIVLVALYFWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAG 300

Query: 301 KKETVSAAIQKAERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATTAATALPSIGE 360
           KKE+VS+A+QKAERFRTELLRRGVLLVPVIWG+GR  Q+EKKGFG  +  AATALPSIGE
Sbjct: 301 KKESVSSALQKAERFRTELLRRGVLLVPVIWGEGRTPQVEKKGFGV-SKKAATALPSIGE 360

Query: 361 DFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRV 420
           DFEKRAQSITAKSKLKAEIRF+AEVIS  EWE WIRDQQ+SEGVTPGEDVYIILRLDGRV
Sbjct: 361 DFEKRAQSITAKSKLKAEIRFKAEVISLEEWERWIRDQQESEGVTPGEDVYIILRLDGRV 420

Query: 421 RRSGRGMPDWQKIIEELPPMEALLSKLER 436
           RRSG+GMPDW +I++ELPPMEALLSKLER
Sbjct: 421 RRSGKGMPDWSQIVQELPPMEALLSKLER 448

[Close]
BLAST of Cla001317 vs. NCBI nr
Match: gi|659108737|ref|XP_008454363.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 812.8 bits (2098), Expect = 3.0e-232
Identity = 415/435 (95.40%), Postives = 423/435 (97.24%), Query Frame = 1 

Query: 1   MAMATLPLFHQLLTLSNPKSATILRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESSI 60
           MAMATLPLFH L TLSNPKS TILRPRLPTSQRTFHLSIL CSSTSQSPEANLQSAES +
Sbjct: 1   MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCV 60

Query: 61  NIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL 120
           N+GL+LFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKACCHAYRGEGKKAADCLRVAL
Sbjct: 61  NLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKACCHAYRGEGKKAADCLRVAL 120

Query: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180
           REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV
Sbjct: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180

Query: 181 RRFFYVALSAAAGISLLFNIPRLIRAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWD 240
           RRFFYVALSAAAGISLLFNIPRL RAIQGGD APDVWETAGNLAVNVGGI+VFVALFLWD
Sbjct: 181 RRFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD 240

Query: 241 NKKEEEQLAQISRNEILSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSAAIQKAER 300
           NKKEEEQLAQISRNE LSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS+AIQKAER
Sbjct: 241 NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER 300

Query: 301 FRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATTAATALPSIGEDFEKRAQSITAKSK 360
           FRTELLRRGVLLVPVIWG+GRE QIEKKGFGAPA  AATALPSIGEDFEKRAQSITAKSK
Sbjct: 301 FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA-AAATALPSIGEDFEKRAQSITAKSK 360

Query: 361 LKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII 420
           LKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGR+RRSGRGMPDWQKII
Sbjct: 361 LKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRIRRSGRGMPDWQKII 420

Query: 421 EELPPMEALLSKLER 436
           EELPPMEALLSKLE+
Sbjct: 421 EELPPMEALLSKLEK 434

[Close]
BLAST of Cla001317 vs. NCBI nr
Match: gi|778689258|ref|XP_004152258.2| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 809.3 bits (2089), Expect = 3.3e-231
Identity = 412/435 (94.71%), Postives = 421/435 (96.78%), Query Frame = 1 

Query: 1   MAMATLPLFHQLLTLSNPKSATILRPRLPTSQRTFHLSILCCSSTSQSPEANLQSAESSI 60
           MAMATLPLFH L TLSNPKS TILRPRLPTSQRTF LSIL CSSTSQSPEANLQSAES +
Sbjct: 1   MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCV 60

Query: 61  NIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL 120
           N GL+LFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL
Sbjct: 61  NFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL 120

Query: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180
           REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV
Sbjct: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180

Query: 181 RRFFYVALSAAAGISLLFNIPRLIRAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWD 240
           R+FFYVALSAAAGISLLFNIPRL RAIQGGD APDVWETAGNLAVNVGGI+VFVALFLWD
Sbjct: 181 RKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD 240

Query: 241 NKKEEEQLAQISRNEILSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSAAIQKAER 300
           NKKEEEQLAQISRNE LSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS+AIQKAER
Sbjct: 241 NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER 300

Query: 301 FRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATTAATALPSIGEDFEKRAQSITAKSK 360
           FRTELLRRGVLLVPVIWG+GRE QIEKKGFGAP T AA ALPSIGEDFEKRAQSITAKSK
Sbjct: 301 FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSK 360

Query: 361 LKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII 420
           LKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII
Sbjct: 361 LKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII 420

Query: 421 EELPPMEALLSKLER 436
           EELPPMEALLSKLE+
Sbjct: 421 EELPPMEALLSKLEK 435

[Close]
BLAST of Cla001317 vs. NCBI nr
Match: gi|1009148622|ref|XP_015892037.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Ziziphus jujuba])

HSP 1 Score: 700.7 bits (1807), Expect = 1.6e-198
Identity = 360/444 (81.08%), Postives = 393/444 (88.51%), Query Frame = 1 

Query: 4   ATLPLFHQLLTLSNPKSATI-LRPRLPTSQ----------RTFHLSILCCSS-TSQSPEA 63
           A L L  QLL  SN K+ T    P L T +             HLS++ CSS TSQSPEA
Sbjct: 5   AALSLQQQLLCFSNLKTRTRRTTPWLSTRKSILTHFNSQTNKLHLSLISCSSSTSQSPEA 64

Query: 64  NLQSAESSINIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKK 123
           N ++AES +N+GL+LFSKGRVK+AL+QFE ALN+DPNPMEAQAALYNKACCHAYRGEGKK
Sbjct: 65  NTETAESCVNLGLQLFSKGRVKDALIQFETALNLDPNPMEAQAALYNKACCHAYRGEGKK 124

Query: 124 AADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLIS 183
           AADCLR ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGY FRRDLKLIS
Sbjct: 125 AADCLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYSFRRDLKLIS 184

Query: 184 EVQAPFRGVRRFFYVALSAAAGISLLFNIPRLIRAIQGGDEAPDVWETAGNLAVNVGGIV 243
           EVQAPFRGVRRFFYVA SAAAGISLLF +PRL+RAIQGGD APD+WETAGN+A+NVGGI+
Sbjct: 185 EVQAPFRGVRRFFYVAFSAAAGISLLFTVPRLVRAIQGGDGAPDLWETAGNVAINVGGII 244

Query: 244 VFVALFLWDNKKEEEQLAQISRNEILSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETV 303
           V VALF WDNKKEEEQLAQI+R+E LSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETV
Sbjct: 245 VLVALFFWDNKKEEEQLAQITRDETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETV 304

Query: 304 SAAIQKAERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATTAATALPSIGEDFEKR 363
           S A++KAERFRTELLRRGVLLVPV WG+G   QIEKKGFG+P T AA ALPSIGEDFEKR
Sbjct: 305 SLAMRKAERFRTELLRRGVLLVPVTWGEGEAPQIEKKGFGSP-TKAAAALPSIGEDFEKR 364

Query: 364 AQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGR 423
           AQSITAKSKL+AEIRF+AEV+SPAEWE WIRDQQKSEGVTPGEDVYIILRLDGRVRRSG+
Sbjct: 365 AQSITAKSKLQAEIRFKAEVVSPAEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGK 424

Query: 424 GMPDWQKIIEELPPMEALLSKLER 436
           GMPDW +I++ELPP+EALLSKLER
Sbjct: 425 GMPDWDQIVKELPPIEALLSKLER 447

[Close]
BLAST of Cla001317 vs. NCBI nr
Match: gi|823188143|ref|XP_012490417.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Gossypium raimondii])

HSP 1 Score: 690.3 bits (1780), Expect = 2.2e-195
Identity = 353/443 (79.68%), Postives = 388/443 (87.58%), Query Frame = 1 

Query: 1   MAMATLPLFHQLLTLSNPKSATILRPRLP------TSQRTFHLSILCCSS--TSQSPEAN 60
           MA+A L L  QLL  S PK     RP  P       SQ+  H+ I+ CSS  TSQSPEAN
Sbjct: 1   MAVAALALNQQLLCFSYPKIRAKSRPWFPQKTTLLNSQKKPHIFIVSCSSSPTSQSPEAN 60

Query: 61  LQSAESSINIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKA 120
           +Q+AES +N+GL LFSKGRVK+ALVQFE AL++DPNP+EAQAALYNKACCHAY+GE KKA
Sbjct: 61  VQTAESCVNLGLSLFSKGRVKDALVQFETALSLDPNPVEAQAALYNKACCHAYQGEAKKA 120

Query: 121 ADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISE 180
           A+CLR ALR+YNLKFGTILNDPDLAS RA PEFKELQEEAR+GGEDIGY FRRDLKLISE
Sbjct: 121 AECLRTALRDYNLKFGTILNDPDLASLRASPEFKELQEEARLGGEDIGYSFRRDLKLISE 180

Query: 181 VQAPFRGVRRFFYVALSAAAGISLLFNIPRLIRAIQGGDEAPDVWETAGNLAVNVGGIVV 240
           VQAPFRGVRRFFYVA SAAAGISLLF +PRL RAI+GGD APD+WET GN  +N+GGI+V
Sbjct: 181 VQAPFRGVRRFFYVAFSAAAGISLLFTVPRLFRAIKGGDGAPDIWETVGNAGINIGGIIV 240

Query: 241 FVALFLWDNKKEEEQLAQISRNEILSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS 300
            VAL+ WDNKKEEEQLAQISRNE LSRLPLRLSTNRIVELVQLRDTVRPVILAGKKE+VS
Sbjct: 241 LVALYFWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKESVS 300

Query: 301 AAIQKAERFRTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATTAATALPSIGEDFEKRA 360
           +A+QKAERFRTELLRRGVLLVPVIWG+GR  Q+EKKGFG  +  AATALPSIGEDFEKRA
Sbjct: 301 SALQKAERFRTELLRRGVLLVPVIWGEGRTPQVEKKGFGV-SKKAATALPSIGEDFEKRA 360

Query: 361 QSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRG 420
           QSITAKSKLKAEIRF+AEVIS  EWE WIRDQQ+SEGVTPGEDVYIILRLDGRVRRSG+G
Sbjct: 361 QSITAKSKLKAEIRFKAEVISLEEWERWIRDQQESEGVTPGEDVYIILRLDGRVRRSGKG 420

Query: 421 MPDWQKIIEELPPMEALLSKLER 436
           MPDW +I++ELPPMEALLSKLER
Sbjct: 421 MPDWSQIVQELPPMEALLSKLER 442

[Close]
BLAST of Cla001317 vs. NCBI nr
Match: gi|225437302|ref|XP_002263425.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Vitis vinifera])

HSP 1 Score: 686.0 bits (1769), Expect = 4.2e-194
Identity = 344/434 (79.26%), Postives = 383/434 (88.25%), Query Frame = 1 

Query: 4   ATLPLFHQLLTLSNPKSATILRPRLPTSQRTFHLSILCC--SSTSQSPEANLQSAESSIN 63
           A L + H LL  SNP++ T +  +L   +R + LS  CC  SS+S SPEA+LQ+AES +N
Sbjct: 5   AALAVNHHLLCFSNPRTVTWVPTKLKPQKRAY-LSFTCCTSSSSSTSPEADLQTAESRVN 64

Query: 64  IGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALR 123
           +GL LFS+GRVK+AL QFE AL +DPNPMEAQAALYNKACCHAYRGEGKKAADCLR ALR
Sbjct: 65  LGLSLFSRGRVKDALAQFETALTLDPNPMEAQAALYNKACCHAYRGEGKKAADCLRTALR 124

Query: 124 EYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR 183
           EYNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIGY FRRDLKLISEVQAPFRGVR
Sbjct: 125 EYNLKFSTILNDPDLASFRALPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVR 184

Query: 184 RFFYVALSAAAGISLLFNIPRLIRAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDN 243
           RFFYVA SAAAGIS  F IPRL RAI+GGD APD+WETAGN A+N+GGI+  V LF WDN
Sbjct: 185 RFFYVAFSAAAGISTFFTIPRLFRAIKGGDGAPDIWETAGNAAINIGGIIALVLLFFWDN 244

Query: 244 KKEEEQLAQISRNEILSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSAAIQKAERF 303
           KKEEEQLAQISR+E LSRLPLRLSTNR+VELVQLRDTVRPVILAG KETVS AI+KAERF
Sbjct: 245 KKEEEQLAQISRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGTKETVSLAIKKAERF 304

Query: 304 RTELLRRGVLLVPVIWGQGRESQIEKKGFGAPATTAATALPSIGEDFEKRAQSITAKSKL 363
           RTELL+RGVLLVPVIWG+ +  Q+EKKGFG P + AAT+LPSIGEDFEKR +SI AKS+L
Sbjct: 305 RTELLKRGVLLVPVIWGENKAPQMEKKGFGIP-SKAATSLPSIGEDFEKRTESIAAKSRL 364

Query: 364 KAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIE 423
           KAE+RF+AEV+SPAEWE WIRDQQKSEGVTPGEDVYIILRLDGRVRRSG+GMPDWQ+I++
Sbjct: 365 KAEVRFKAEVVSPAEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVK 424

Query: 424 ELPPMEALLSKLER 436
           ELPPMEALLSKLER
Sbjct: 425 ELPPMEALLSKLER 436

The following BLAST results are available for this feature:
BLAST of Cla001317 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LPA1_ARATH1.7e-17169.16Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 P... [more]
BLAST of Cla001317 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT96_CUCSA2.3e-23194.71Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001650 PE=4 SV=1[more]
A0A0D2SCC8_GOSRA1.5e-19579.68Uncharacterized protein OS=Gossypium raimondii GN=B456_007G129100 PE=4 SV=1[more]
D7U260_VITVI2.9e-19479.26Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g00100 PE=4 SV=... [more]
A0A0B0NWC9_GOSAR3.8e-19478.78Uncharacterized protein OS=Gossypium arboreum GN=F383_17181 PE=4 SV=1[more]
A0A0D2TE16_GOSRA1.4e-19378.62Uncharacterized protein OS=Gossypium raimondii GN=B456_007G129100 PE=4 SV=1[more]
BLAST of Cla001317 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108737|ref|XP_008454363.1|3.0e-23295.40PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis me... [more]
gi|778689258|ref|XP_004152258.2|3.3e-23194.71PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis sa... [more]
gi|1009148622|ref|XP_015892037.1|1.6e-19881.08PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Ziziphus j... [more]
gi|823188143|ref|XP_012490417.1|2.2e-19579.68PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Gossypium raimondii][more]
gi|225437302|ref|XP_002263425.1|4.2e-19479.26PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Vitis vini... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom
IPR019734TPR_repeat
IPR021883LPA1-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010270 photosystem II oxygen evolving complex assembly
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0016740 transferase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU40499watermelon EST collection version 2.0transcribed_cluster
WMU60493watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001317Cla001317.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU40499WMU40499transcribed_cluster
WMU60493WMU60493transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 51..122
score: 1.
IPR011990Tetratricopeptide-like helical domainunknownSSF48452TPR-likecoord: 49..122
score: 6.92
IPR013026Tetratricopeptide repeat-containing domainPROFILEPS50293TPR_REGIONcoord: 56..89
score: 10
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 56..89
score: 0.
IPR019734Tetratricopeptide repeatPROFILEPS50005TPRcoord: 56..89
score: 9
IPR021883Protein of unknown function DUF3493PFAMPF11998DUF3493coord: 164..241
score: 1.6
NoneNo IPR availablePANTHERPTHR17130MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25coord: 38..435
score: 2.0E
NoneNo IPR availablePANTHERPTHR17130:SF20PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTICcoord: 38..435
score: 2.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla001317Cla97C10G193650Watermelon (97103) v2wmwmbB051
Cla001317Csa4G001650Cucumber (Chinese Long) v2cuwmB290
Cla001317MELO3C017970Melon (DHL92) v3.5.1mewmB497
Cla001317ClCG10G010650Watermelon (Charleston Gray)wcgwmB061
Cla001317CSPI04G00700Wild cucumber (PI 183967)cpiwmB291
Cla001317Cucsa.097240Cucumber (Gy14) v1cgywmB115
Cla001317CmaCh14G008940Cucurbita maxima (Rimu)cmawmB227
Cla001317CmoCh14G009230Cucurbita moschata (Rifu)cmowmB213
Cla001317Lsi03G010560Bottle gourd (USVL1VR-Ls)lsiwmB240
Cla001317Cp4.1LG03g05430Cucurbita pepo (Zucchini)cpewmB595
Cla001317CsGy4G000620Cucumber (Gy14) v2cgybwmB269
Cla001317MELO3C017970.2Melon (DHL92) v3.6.1medwmB483
Cla001317Carg11126Silver-seed gourdcarwmB0816
Cla001317CsaV3_4G000660Cucumber (Chinese Long) v3cucwmB300
Cla001317Bhi11G000992Wax gourdwgowmB007
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001317Silver-seed gourdcarwmB0108
Cla001317Silver-seed gourdcarwmB0759
Cla001317Cucumber (Chinese Long) v3cucwmB601
Cla001317Watermelon (97103) v2wmwmbB069
Cla001317Watermelon (97103) v1wmwmB056
Cla001317Cucumber (Gy14) v1cgywmB404
Cla001317Cucurbita maxima (Rimu)cmawmB336
Cla001317Cucurbita maxima (Rimu)cmawmB416
Cla001317Cucurbita moschata (Rifu)cmowmB332
Cla001317Cucurbita moschata (Rifu)cmowmB410
Cla001317Wild cucumber (PI 183967)cpiwmB593
Cla001317Melon (DHL92) v3.5.1mewmB090
Cla001317Watermelon (Charleston Gray)wcgwmB051
Cla001317Watermelon (Charleston Gray)wcgwmB320
Cla001317Cucumber (Chinese Long) v2cuwmB574
Cla001317Cucurbita pepo (Zucchini)cpewmB141
Cla001317Cucurbita pepo (Zucchini)cpewmB539
Cla001317Bottle gourd (USVL1VR-Ls)lsiwmB178
Cla001317Cucumber (Gy14) v2cgybwmB537