Cla001310 (gene) Watermelon (97103) v1

Overview
NameCla001310
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGypsy-like retrotransposase (AHRD V1 *-*- B0F6T3_CUCSA)
LocationChr10 : 15554942 .. 15555346 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCAAGTCAAGCATGAGGTGCCAAAGAACGAAGGGATGATAAGGACACAAGGAAAGAACTCAAAATCTCCCGTCTTATGCTATGTCCCTCTATCTCGACGCAAGAAAGAAGAATCACCATTTGCAGAATGCTCCAAAAATCTAATGATCGGAGACGTCAAAATTTTGAAAGCCACTATACCGCTTACAAAGATGGATAAGAGTGACATTAAAAAAACTGAGACAGAGCAAGCTACGGCAACTCTGCCAGAAAAACGAACAAAGGATGTGTCACACTCTACTTTTAAAAACCGATGCGTTGAAGAGCCTATAAAGAAAAGAAGAGACCATGTTGGACGCATGATCAGGACTAAGGTAACGCATGATAAAGGTGGACGCATAGGAAGTAACTCGAGAGCTTGA

mRNA sequence

ATGACCCAAGTCAAGCATGAGGTGCCAAAGAACGAAGGGATGATAAGGACACAAGGAAAGAACTCAAAATCTCCCGTCTTATGCTATGTCCCTCTATCTCGACGCAAGAAAGAAGAATCACCATTTGCAGAATGCTCCAAAAATCTAATGATCGGAGACGTCAAAATTTTGAAAGCCACTATACCGCTTACAAAGATGGATAAGAGTGACATTAAAAAAACTGAGACAGAGCAAGCTACGGCAACTCTGCCAGAAAAACGAACAAAGGATGTGTCACACTCTACTTTTAAAAACCGATGCGTTGAAGAGCCTATAAAGAAAAGAAGAGACCATGTTGGACGCATGATCAGGACTAAGGTAACGCATGATAAAGGTGGACGCATAGGAAGTAACTCGAGAGCTTGA

Coding sequence (CDS)

ATGACCCAAGTCAAGCATGAGGTGCCAAAGAACGAAGGGATGATAAGGACACAAGGAAAGAACTCAAAATCTCCCGTCTTATGCTATGTCCCTCTATCTCGACGCAAGAAAGAAGAATCACCATTTGCAGAATGCTCCAAAAATCTAATGATCGGAGACGTCAAAATTTTGAAAGCCACTATACCGCTTACAAAGATGGATAAGAGTGACATTAAAAAAACTGAGACAGAGCAAGCTACGGCAACTCTGCCAGAAAAACGAACAAAGGATGTGTCACACTCTACTTTTAAAAACCGATGCGTTGAAGAGCCTATAAAGAAAAGAAGAGACCATGTTGGACGCATGATCAGGACTAAGGTAACGCATGATAAAGGTGGACGCATAGGAAGTAACTCGAGAGCTTGA

Protein sequence

MTQVKHEVPKNEGMIRTQGKNSKSPVLCYVPLSRRKKEESPFAECSKNLMIGDVKILKATIPLTKMDKSDIKKTETEQATATLPEKRTKDVSHSTFKNRCVEEPIKKRRDHVGRMIRTKVTHDKGGRIGSNSRA
Homology
[Close]
BLAST of Cla001310 vs. TrEMBL
Match: B0F6T3_CUCSA (Gypsy-like retrotransposase OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.4e-06
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 1 

Query: 20 KNSKSP-VLCYVPLSRRKKEESPFAECSKNLMIGDVKILKA--TIPLTKMDKSDIKKTET 79
          +N+ +P VL YVP SRR K ES F E  K+L +GD+K+LK   T PLTK+ K +IK    
Sbjct: 6  ENASNPSVLHYVPPSRRMKGESSFVESPKDLKVGDIKVLKESFTTPLTKIMKQEIKIDLM 65

Query: 80 EQATATLPEKRTKD 91
          E+    LP++R KD
Sbjct: 66 EE---NLPQRRMKD 76

[Close]
BLAST of Cla001310 vs. NCBI nr
Match: gi|659099164|ref|XP_008450461.1| (PREDICTED: uncharacterized protein LOC103492056 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-13
Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 1 

Query: 2   TQVKHEVPKNEGMIRTQGKNSKSPVLCYVPLSRRKKEESPFAECSKNLMIGDVKILKA-- 61
           T++K   PK E +   Q + S   VL Y+PLSRR+K ESPFAECSKNL + + +ILK   
Sbjct: 23  TEIKLRAPKAEKIATLQKEVSNPTVLRYIPLSRREKGESPFAECSKNLTVKNTEILKENF 82

Query: 62  TIPLTKMDKSDIKKTETEQATATLPEKRT 89
           T PLTK++K + KK E +   A LPE+RT
Sbjct: 83  TAPLTKIEKGEAKKIEKKDLEAYLPERRT 111

[Close]
BLAST of Cla001310 vs. NCBI nr
Match: gi|778697752|ref|XP_011654390.1| (PREDICTED: uncharacterized protein LOC105435379 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1 

Query: 2   TQVKHEVPKNEGMIRTQGKNSKSPVLCYVPLSRRKKEESPFAECSKNLMIGDVKILKA-- 61
           TQ K EVPK+E +   Q K +K P+L YVPLSRRK  ES   E  +NLMIG ++IL+   
Sbjct: 158 TQAKSEVPKSEKITLPQEKATKPPILRYVPLSRRKNGESSITEYPENLMIGSIEILEESF 217

Query: 62  TIPLTKMDKSDIKKTETEQATATLPEKR 88
           T PLTK++K + K+ +T+   A LP++R
Sbjct: 218 TTPLTKIEKGETKRLKTKSVEAFLPKRR 245

[Close]
BLAST of Cla001310 vs. NCBI nr
Match: gi|659113191|ref|XP_008456446.1| (PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-11
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 1 

Query: 4   VKHEVPKNEGMIRT-------QGKNSKSPVLCYVPLSRRKKEESPFAECSKNLMIGDVKI 63
           V  EVP +E    T         K S  P+L YVPLSRRKK ESPF E S+ L +GD+++
Sbjct: 170 VSVEVPISEASTSTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESSQALKVGDIEV 229

Query: 64  LKA--TIPLTKMDKSDIKKTETEQATATLPEKRTKD 91
           L+   T PLTK+ K   ++T+T+Q  A+LP++RTKD
Sbjct: 230 LRESFTTPLTKITK---QETKTDQTEASLPQRRTKD 262

[Close]
BLAST of Cla001310 vs. NCBI nr
Match: gi|778660504|ref|XP_011656345.1| (PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-10
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1 

Query: 12  EGMIRTQGKNSKSPVLCYVPLSRRKKEESPFAECSKNLMIGDVKILKA--TIPLTKMDKS 71
           +GMI      + +PVL YVPLSRRKK ESPF E  K L +GD++I+K   T PLTK+ K 
Sbjct: 417 KGMILKDENAANTPVLRYVPLSRRKKGESPFMESPKGLKVGDIEIIKESFTTPLTKIAKQ 476

Query: 72  DIKKTETEQATATLPEKRTKD 91
           ++K    +   A LP++RTKD
Sbjct: 477 EVK---VDLVEANLPQRRTKD 494

[Close]
BLAST of Cla001310 vs. NCBI nr
Match: gi|659074577|ref|XP_008437679.1| (PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-09
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1 

Query: 2   TQVKHEVPKNEGMIRTQGKNSKSPVLCYVPLSRRKKEESPFAECSKNLMIGDVKILKA-- 61
           T+ K   P+ E +   + + S  PVL Y+PLSRRKK ESPFAECSKNL + + +ILK   
Sbjct: 715 TETKLRTPEAEKIATLRKEVSNPPVLRYIPLSRRKKGESPFAECSKNLTVKNTEILKENF 774

Query: 62  TIPLTKMDKSDIKK 74
           T PL K++K + KK
Sbjct: 775 TAPLAKIEKGEAKK 788

The following BLAST results are available for this feature:
BLAST of Cla001310 vs. TrEMBL
Match NameE-valueIdentityDescription
B0F6T3_CUCSA5.4e-0648.65Gypsy-like retrotransposase OS=Cucumis sativus PE=4 SV=1[more]
BLAST of Cla001310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099164|ref|XP_008450461.1|2.2e-1350.56PREDICTED: uncharacterized protein LOC103492056 [Cucumis melo][more]
gi|778697752|ref|XP_011654390.1|1.5e-1248.86PREDICTED: uncharacterized protein LOC105435379 [Cucumis sativus][more]
gi|659113191|ref|XP_008456446.1|3.6e-1146.88PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo][more]
gi|778660504|ref|XP_011656345.1|3.0e-1049.38PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus][more]
gi|659074577|ref|XP_008437679.1|3.4e-0950.00PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001310Cla001310.1mRNA