Cla001221 (gene) Watermelon (97103) v1

Overview
NameCla001221
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 4141010 .. 4141249 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAACCAAAGCAACACAGTCTGCACCAATCCAAGCGCCAGCTCCTCCAACTACAGCTCCATCTCAACCCACTCAGACATTGCCTCCTCTTCCTCCGAAATCCAAGAAGAGGCCACTCGACAGAAATGCTTATATCCAATATACAAAGATGCGAGCTGTTATTAGAGATCTTCGTCCTCATTTTCTCGAGGTATCAACCCGGATCAATTTCCTTCTCATGGTTATTCTCTCATAA

mRNA sequence

ATGGAGGAAACCAAAGCAACACAGTCTGCACCAATCCAAGCGCCAGCTCCTCCAACTACAGCTCCATCTCAACCCACTCAGACATTGCCTCCTCTTCCTCCGAAATCCAAGAAGAGGCCACTCGACAGAAATGCTTATATCCAATATACAAAGATGCGAGCTGTTATTAGAGATCTTCGTCCTCATTTTCTCGAGGTATCAACCCGGATCAATTTCCTTCTCATGGTTATTCTCTCATAA

Coding sequence (CDS)

ATGGAGGAAACCAAAGCAACACAGTCTGCACCAATCCAAGCGCCAGCTCCTCCAACTACAGCTCCATCTCAACCCACTCAGACATTGCCTCCTCTTCCTCCGAAATCCAAGAAGAGGCCACTCGACAGAAATGCTTATATCCAATATACAAAGATGCGAGCTGTTATTAGAGATCTTCGTCCTCATTTTCTCGAGGTATCAACCCGGATCAATTTCCTTCTCATGGTTATTCTCTCATAA

Protein sequence

MEETKATQSAPIQAPAPPTTAPSQPTQTLPPLPPKSKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVSTRINFLLMVILS
Homology
[Close]
BLAST of Cla001221 vs. TrEMBL
Match: A0A0A0K7F0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G003420 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.1e-14
Identity = 44/66 (66.67%), Postives = 47/66 (71.21%), Query Frame = 1 

Query: 1  MEETKATQSAPIQAPAPPTTAPSQPTQTLPPLPPKSKKRPLDRNAYIQYTKMRAVIRDLR 60
          MEETKAT +               P+QTLPPLPPK KKRP DRNAYIQ+TKMR VIRDLR
Sbjct: 1  MEETKATTA---------------PSQTLPPLPPKLKKRPFDRNAYIQFTKMRTVIRDLR 51

Query: 61 PHFLEV 67
          PHFLEV
Sbjct: 61 PHFLEV 51

[Close]
BLAST of Cla001221 vs. TrEMBL
Match: A0A059CIK7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02282 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-09
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 1 

Query: 1  MEETKATQSAPIQAPAPPTTAPSQPTQTLPPLPPKSKKRPLDRNAYIQ---YTKMRAVIR 60
          ME+ K    AP  APAP  TA + P Q  PPLPP SKKRPLD +A +Q   Y +MRAV+ 
Sbjct: 1  MEDPKP---APAPAPAPDPTAQTPPGQ--PPLPPPSKKRPLDADASVQNSKYFRMRAVLG 60

Query: 61 DLRPHFLEV 67
          DLRPHF+EV
Sbjct: 61 DLRPHFIEV 64

[Close]
BLAST of Cla001221 vs. TrEMBL
Match: A0A067JXM2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14413 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.0e-09
Identity = 42/102 (41.18%), Postives = 52/102 (50.98%), Query Frame = 1 

Query: 1   MEETKATQSAPIQAPAP----PTTAPSQPTQTLPP-----------------------LP 60
           MEE K  Q  P + P P    P TAP+ P+Q+ PP                       LP
Sbjct: 1   MEEAKPAQDPPTENPNPDPNPPETAPAPPSQSPPPAPATVAAPPPPPPPPPPAPAAGSLP 60

Query: 61  PKSKKRPLDRNAYIQ---YTKMRAVIRDLRPHFLEVSTRINF 73
           PK+KKRPL+    IQ   Y KMRAV++D+RPH LEV   +NF
Sbjct: 61  PKTKKRPLESYVQIQECSYFKMRAVLKDIRPHLLEVLRTVNF 102

[Close]
BLAST of Cla001221 vs. TrEMBL
Match: F6I612_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g02890 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-07
Identity = 34/69 (49.28%), Postives = 39/69 (56.52%), Query Frame = 1 

Query: 1  MEETKATQSAPIQAPAPPTTAPSQPTQTLPPLPPKSKKRPLDRNAYIQ---YTKMRAVIR 60
          MEE    Q+ P   P  P   P  P Q    LP K+KKR LD N  IQ   Y K RAV++
Sbjct: 1  MEEPNPAQTNPTPPPNAPQNLPPPPPQPPTSLPQKTKKRSLDSNVSIQNSKYFKTRAVVK 60

Query: 61 DLRPHFLEV 67
          DLRPHF+EV
Sbjct: 61 DLRPHFIEV 69

[Close]
BLAST of Cla001221 vs. TrEMBL
Match: M5X0P7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011834mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-07
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1 

Query: 1  MEETKATQSAPIQAPAPPTTAPSQPTQTLPP-LPPKSKKRPLDRNAYI---QYTKMRAVI 60
          ME+    Q    Q   PP +  +   Q  PP LPPK+KKRPLD +A+I    Y K+RAV+
Sbjct: 1  MEDPNPAQPTVTQIANPPNSEEALAPQPPPPSLPPKTKKRPLDNDAHISNSSYFKVRAVL 60

Query: 61 RDLRPHFLEVSTRINFLL 75
          +++RPHFLEV    +F L
Sbjct: 61 KEIRPHFLEVLRTPDFRL 78

[Close]
BLAST of Cla001221 vs. NCBI nr
Match: gi|659116786|ref|XP_008458259.1| (PREDICTED: uncharacterized protein LOC103497729 [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 9.8e-17
Identity = 50/72 (69.44%), Postives = 54/72 (75.00%), Query Frame = 1 

Query: 1  MEETKATQSAPIQAPAPPTTAPSQPTQTLPPLPPKSKKRPLDRNAYIQYTKMRAVIRDLR 60
          MEETKA          PPTTA   P+QTLPPLPPK KKRPLDRNAY+Q+TKMRAVIRDLR
Sbjct: 1  MEETKAA--------VPPTTA---PSQTLPPLPPKLKKRPLDRNAYVQFTKMRAVIRDLR 60

Query: 61 PHFLEVSTRINF 73
          PHFLEV    +F
Sbjct: 61 PHFLEVMKTPDF 61

[Close]
BLAST of Cla001221 vs. NCBI nr
Match: gi|449441476|ref|XP_004138508.1| (PREDICTED: uncharacterized protein LOC101203384 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 5.9e-14
Identity = 44/66 (66.67%), Postives = 47/66 (71.21%), Query Frame = 1 

Query: 1  MEETKATQSAPIQAPAPPTTAPSQPTQTLPPLPPKSKKRPLDRNAYIQYTKMRAVIRDLR 60
          MEETKAT +               P+QTLPPLPPK KKRP DRNAYIQ+TKMR VIRDLR
Sbjct: 1  MEETKATTA---------------PSQTLPPLPPKLKKRPFDRNAYIQFTKMRTVIRDLR 51

Query: 61 PHFLEV 67
          PHFLEV
Sbjct: 61 PHFLEV 51

[Close]
BLAST of Cla001221 vs. NCBI nr
Match: gi|702326803|ref|XP_010053694.1| (PREDICTED: pre-mRNA-splicing ATP-dependent RNA helicase prp28-like [Eucalyptus grandis])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 1 

Query: 1  MEETKATQSAPIQAPAPPTTAPSQPTQTLPPLPPKSKKRPLDRNAYIQ---YTKMRAVIR 60
          ME+ K    AP  APAP  TA + P Q  PPLPP SKKRPLD +A +Q   Y +MRAV+ 
Sbjct: 1  MEDPKP---APAPAPAPDPTAQTPPGQ--PPLPPPSKKRPLDADASVQNSKYFRMRAVLG 60

Query: 61 DLRPHFLEV 67
          DLRPHF+EV
Sbjct: 61 DLRPHFIEV 64

[Close]
BLAST of Cla001221 vs. NCBI nr
Match: gi|802695466|ref|XP_012083412.1| (PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas])

HSP 1 Score: 68.6 bits (166), Expect = 5.8e-09
Identity = 42/102 (41.18%), Postives = 52/102 (50.98%), Query Frame = 1 

Query: 1   MEETKATQSAPIQAPAP----PTTAPSQPTQTLPP-----------------------LP 60
           MEE K  Q  P + P P    P TAP+ P+Q+ PP                       LP
Sbjct: 1   MEEAKPAQDPPTENPNPDPNPPETAPAPPSQSPPPAPATVAAPPPPPPPPPPAPAAGSLP 60

Query: 61  PKSKKRPLDRNAYIQ---YTKMRAVIRDLRPHFLEVSTRINF 73
           PK+KKRPL+    IQ   Y KMRAV++D+RPH LEV   +NF
Sbjct: 61  PKTKKRPLESYVQIQECSYFKMRAVLKDIRPHLLEVLRTVNF 102

[Close]
BLAST of Cla001221 vs. NCBI nr
Match: gi|225454190|ref|XP_002272636.1| (PREDICTED: uncharacterized protein LOC100244723 [Vitis vinifera])

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 34/69 (49.28%), Postives = 39/69 (56.52%), Query Frame = 1 

Query: 1  MEETKATQSAPIQAPAPPTTAPSQPTQTLPPLPPKSKKRPLDRNAYIQ---YTKMRAVIR 60
          MEE    Q+ P   P  P   P  P Q    LP K+KKR LD N  IQ   Y K RAV++
Sbjct: 1  MEEPNPAQTNPTPPPNAPQNLPPPPPQPPTSLPQKTKKRSLDSNVSIQNSKYFKTRAVVK 60

Query: 61 DLRPHFLEV 67
          DLRPHF+EV
Sbjct: 61 DLRPHFIEV 69

The following BLAST results are available for this feature:
BLAST of Cla001221 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7F0_CUCSA4.1e-1466.67Uncharacterized protein OS=Cucumis sativus GN=Csa_6G003420 PE=4 SV=1[more]
A0A059CIK7_EUCGR1.4e-0957.97Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02282 PE=4 SV=1[more]
A0A067JXM2_JATCU4.0e-0941.18Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14413 PE=4 SV=1[more]
F6I612_VITVI1.7e-0749.28Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g02890 PE=4 SV=... [more]
M5X0P7_PRUPE2.2e-0744.87Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011834mg PE=4 SV=1[more]
BLAST of Cla001221 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116786|ref|XP_008458259.1|9.8e-1769.44PREDICTED: uncharacterized protein LOC103497729 [Cucumis melo][more]
gi|449441476|ref|XP_004138508.1|5.9e-1466.67PREDICTED: uncharacterized protein LOC101203384 [Cucumis sativus][more]
gi|702326803|ref|XP_010053694.1|2.0e-0957.97PREDICTED: pre-mRNA-splicing ATP-dependent RNA helicase prp28-like [Eucalyptus g... [more]
gi|802695466|ref|XP_012083412.1|5.8e-0941.18PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas][more]
gi|225454190|ref|XP_002272636.1|2.4e-0749.28PREDICTED: uncharacterized protein LOC100244723 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU05959watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001221Cla001221.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU05959WMU05959transcribed_cluster