Cla001174 (gene) Watermelon (97103) v1

Overview
NameCla001174
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTy3-gypsy retrotransposon protein (AHRD V1 ***- E5GBB0_CUCME)
LocationChr10 : 9343984 .. 9344199 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCTAACGCTTCAAGTGACACTTCTAGAAAGACCGATTACTCGCAGCCGCTCTAAAGAAATACAGTCAGAAGAGCAACCTACCTTTGAGATCGCGAGAAATATATGGGAACGGATCTCAAGAGACCCGAAAGTTGGGGTCGTCATCAAAGAGAATCCTACACTTGACAAGTATAGGCTTCTGAACGACCAAGCGAGGAGGCATCCCAACTAA

mRNA sequence

ATGCTTCTAACGCTTCAAGTGACACTTCTAGAAAGACCGATTACTCGCAGCCGCTCTAAAGAAATACAGTCAGAAGAGCAACCTACCTTTGAGATCGCGAGAAATATATGGGAACGGATCTCAAGAGACCCGAAAGTTGGGGTCGTCATCAAAGAGAATCCTACACTTGACAAGTATAGGCTTCTGAACGACCAAGCGAGGAGGCATCCCAACTAA

Coding sequence (CDS)

ATGCTTCTAACGCTTCAAGTGACACTTCTAGAAAGACCGATTACTCGCAGCCGCTCTAAAGAAATACAGTCAGAAGAGCAACCTACCTTTGAGATCGCGAGAAATATATGGGAACGGATCTCAAGAGACCCGAAAGTTGGGGTCGTCATCAAAGAGAATCCTACACTTGACAAGTATAGGCTTCTGAACGACCAAGCGAGGAGGCATCCCAACTAA

Protein sequence

MLLTLQVTLLERPITRSRSKEIQSEEQPTFEIARNIWERISRDPKVGVVIKENPTLDKYRLLNDQARRHPN
Homology
[Close]
BLAST of Cla001174 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-08
Identity = 31/57 (54.39%), Postives = 45/57 (78.95%), Query Frame = 1 

Query: 11 ERPITRSRSKEIQS-EEQPTFEIARNIWERISRDPKVGVVIKENPTLDKYRLLNDQA 67
          +RP TRS S+EIQS E+   FE+A+NIWE+IS+ PK G++IKENP +DK+  L++ +
Sbjct: 16 KRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENPAIDKHNSLSEHS 72

[Close]
BLAST of Cla001174 vs. NCBI nr
Match: gi|307135887|gb|ADN33752.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-08
Identity = 31/57 (54.39%), Postives = 45/57 (78.95%), Query Frame = 1 

Query: 11 ERPITRSRSKEIQS-EEQPTFEIARNIWERISRDPKVGVVIKENPTLDKYRLLNDQA 67
          +RP TRS S+EIQS E+   FE+A+NIWE+IS+ PK G++IKENP +DK+  L++ +
Sbjct: 16 KRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENPAIDKHNSLSEHS 72

The following BLAST results are available for this feature:
BLAST of Cla001174 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB0_CUCME1.4e-0854.39Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cla001174 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135887|gb|ADN33752.1|2.0e-0854.39ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001174Cla001174.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001174Melon (DHL92) v3.6.1medwmB441
Cla001174Cucumber (Chinese Long) v3cucwmB215
Cla001174Wax gourdwgowmB017
Cla001174Cucumber (Gy14) v1cgywmB473
Cla001174Wild cucumber (PI 183967)cpiwmB206
Cla001174Melon (DHL92) v3.5.1mewmB451
Cla001174Cucumber (Chinese Long) v2cuwmB206
Cla001174Bottle gourd (USVL1VR-Ls)lsiwmB352
Cla001174Cucumber (Gy14) v2cgybwmB194