Cla001145 (gene) Watermelon (97103) v1

Overview
NameCla001145
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionReplication factor C subunit 4 (AHRD V1 **** B6TA83_MAIZE); contains Interpro domain(s) IPR013748 Replication factor C
LocationChr10 : 3804733 .. 3805326 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTCCTATCATGCGTTTTTATCTTTCCTTGTCTTTTATAAACTCAGAAAATTTCATCTTGACATGCTTGTTGATCCCCCAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGTATGTTAAAACCTGATTCATCATTTGATCATACCAGATCAAGCAAGTACTCACTCTTTTGATGCATTGCAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATTGTTCGTGAGACTGCAAAAGCGCCATGA

mRNA sequence

ATGAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATTGTTCGTGAGACTGCAAAAGCGCCATGA

Coding sequence (CDS)

ATGAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATTGTTCGTGAGACTGCAAAAGCGCCATGA

Protein sequence

MKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP
Homology
[Close]
BLAST of Cla001145 vs. Swiss-Prot
Match: RFC2_ARATH (Replication factor C subunit 2 OS=Arabidopsis thaliana GN=RFC2 PE=1 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 4.5e-76
Identity = 139/145 (95.86%), Postives = 139/145 (95.86%), Query Frame = 1 

Query: 2   KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 61
           KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGF FVNQ+NVFKVCDQPHPLHVKN+VRN
Sbjct: 189 KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLHVKNIVRN 248

Query: 62  VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 121
           VLE KFD AC GLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD
Sbjct: 249 VLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 308

Query: 122 GVGSYLQLCGLLAKLSIVRETAKAP 147
           GVGSYLQLCGLLAKLSIVRETAKAP
Sbjct: 309 GVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]
BLAST of Cla001145 vs. Swiss-Prot
Match: RFC4_ORYSJ (Replication factor C subunit 4 OS=Oryza sativa subsp. japonica GN=RFC4 PE=2 SV=2)

HSP 1 Score: 269.2 bits (687), Expect = 2.6e-71
Identity = 128/144 (88.89%), Postives = 137/144 (95.14%), Query Frame = 1 

Query: 2   KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 61
           KVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQ+NVFKVCDQPHPLHVKN+V+N
Sbjct: 191 KVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLHVKNMVKN 250

Query: 62  VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 121
           VL+GKFD+AC+ LKQLYDLGYSPTDIITTLFR+IKNYDMAEYLKLE +KETGFAHMRICD
Sbjct: 251 VLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKETGFAHMRICD 310

Query: 122 GVGSYLQLCGLLAKLSIVRETAKA 146
           GVGS+LQL GLLAK ++VRETAKA
Sbjct: 311 GVGSFLQLSGLLAKFALVRETAKA 334

[Close]
BLAST of Cla001145 vs. Swiss-Prot
Match: RFC2_HUMAN (Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3)

HSP 1 Score: 177.9 bits (450), Expect = 7.8e-44
Identity = 83/135 (61.48%), Postives = 103/135 (76.30%), Query Frame = 1 

Query: 2   KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 61
           +VPY  +GLEAIIFTA GDMRQALNNLQ+TFSGF F+N +NVFKVCD+PHPL VK ++++
Sbjct: 210 RVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQH 269

Query: 62  VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 121
            +    D+A   L  L+ LGYSP DII  +FR+ K + MAEYLKLEF+KE G+ HM+I +
Sbjct: 270 CVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAE 329

Query: 122 GVGSYLQLCGLLAKL 137
           GV S LQ+ GLLA+L
Sbjct: 330 GVNSLLQMAGLLARL 344

[Close]
BLAST of Cla001145 vs. Swiss-Prot
Match: RFC2_MOUSE (Replication factor C subunit 2 OS=Mus musculus GN=Rfc2 PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-43
Identity = 81/135 (60.00%), Postives = 104/135 (77.04%), Query Frame = 1 

Query: 2   KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 61
           KVPY  +GLEAIIFTA GDMRQALNNLQ+TFSGF ++N +NVFKVCD+PHPL VK ++++
Sbjct: 205 KVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQH 264

Query: 62  VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 121
            ++   D+A   L  L+ LGYSP D+I  +FR+ K + MAEYLKLEF+KE G+ HM++ +
Sbjct: 265 CVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAE 324

Query: 122 GVGSYLQLCGLLAKL 137
           GV S LQ+ GLLA+L
Sbjct: 325 GVNSLLQMAGLLARL 339

[Close]
BLAST of Cla001145 vs. Swiss-Prot
Match: RFC2_RAT (Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-43
Identity = 81/135 (60.00%), Postives = 104/135 (77.04%), Query Frame = 1 

Query: 2   KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 61
           KVPY  +GLEAIIFTA GDMRQALNNLQ+TFSGF ++N +NVFKVCD+PHPL VK ++++
Sbjct: 205 KVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQH 264

Query: 62  VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 121
            ++   D+A   L  L+ LGYSP D+I  +FR+ K + MAEYLKLEF+KE G+ HM++ +
Sbjct: 265 CVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAE 324

Query: 122 GVGSYLQLCGLLAKL 137
           GV S LQ+ GLLA+L
Sbjct: 325 GVNSLLQMAGLLARL 339

[Close]
BLAST of Cla001145 vs. TrEMBL
Match: A0A0A0L763_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G038730 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 9.2e-76
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 1 

Query: 2   KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 61
           KVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQDNVFKVCDQPHPLHVKNVVRN
Sbjct: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 246

Query: 62  VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 121
           VLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD
Sbjct: 247 VLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 306

Query: 122 GVGSYLQLCGLLAKLSIVRETAKAP 147
           GVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 307 GVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]
BLAST of Cla001145 vs. TrEMBL
Match: D7KU15_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_475032 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.0e-74
Identity = 139/144 (96.53%), Postives = 141/144 (97.92%), Query Frame = 1 

Query: 3   VPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRNV 62
           VPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQ+NVFKVCDQPHPLHVKN+VRNV
Sbjct: 191 VPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNIVRNV 250

Query: 63  LEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDG 122
           LE KFDDAC GLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDG
Sbjct: 251 LESKFDDACHGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDG 310

Query: 123 VGSYLQLCGLLAKLSIVRETAKAP 147
           VGSYLQLCGLLAKLSI RETAKAP
Sbjct: 311 VGSYLQLCGLLAKLSIARETAKAP 334

[Close]
BLAST of Cla001145 vs. TrEMBL
Match: W9SZ84_9ROSA (Replication factor C subunit 2 OS=Morus notabilis GN=L484_010560 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.0e-74
Identity = 136/145 (93.79%), Postives = 144/145 (99.31%), Query Frame = 1 

Query: 2   KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 61
           KVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRF+NQ+NVFKVCDQPHPLHVKN+VR+
Sbjct: 186 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFLNQENVFKVCDQPHPLHVKNMVRH 245

Query: 62  VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 121
           VLEGKFDDAC+GLKQLYDLGYSPTDIITT FRIIKNYDMAEYLKL+FMKETGFAHMRICD
Sbjct: 246 VLEGKFDDACSGLKQLYDLGYSPTDIITTFFRIIKNYDMAEYLKLQFMKETGFAHMRICD 305

Query: 122 GVGSYLQLCGLLAKLSIVRETAKAP 147
           GVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 306 GVGSYLQLCGLLAKLSLVRETAKAP 330

[Close]
BLAST of Cla001145 vs. TrEMBL
Match: D7TW50_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g04140 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 3.9e-74
Identity = 137/144 (95.14%), Postives = 143/144 (99.31%), Query Frame = 1 

Query: 2   KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 61
           KVP+VPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQ+NVFKVCDQPHPLHVKN+VRN
Sbjct: 186 KVPFVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 245

Query: 62  VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 121
           VLEGKFDDAC GLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD
Sbjct: 246 VLEGKFDDACYGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 305

Query: 122 GVGSYLQLCGLLAKLSIVRETAKA 146
           GVGSYLQLCGLLAKL++VRETAKA
Sbjct: 306 GVGSYLQLCGLLAKLAVVRETAKA 329

[Close]
BLAST of Cla001145 vs. TrEMBL
Match: A0A087HEH5_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G007400 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 5.0e-74
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 1 

Query: 3   VPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRNV 62
           VPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQ+NVFKVCDQPHPLHVKN+VRNV
Sbjct: 190 VPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNIVRNV 249

Query: 63  LEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDG 122
           LE KFDDAC GLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDG
Sbjct: 250 LESKFDDACHGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDG 309

Query: 123 VGSYLQLCGLLAKLSIVRETAKA 146
           VGSYLQLCGLLAKL+IVRETAKA
Sbjct: 310 VGSYLQLCGLLAKLAIVRETAKA 332

[Close]
BLAST of Cla001145 vs. NCBI nr
Match: gi|659096167|ref|XP_008448957.1| (PREDICTED: replication factor C subunit 2 isoform X2 [Cucumis melo])

HSP 1 Score: 295.0 bits (754), Expect = 7.0e-77
Identity = 143/145 (98.62%), Postives = 145/145 (100.00%), Query Frame = 1 

Query: 2   KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 61
           KVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHVKNVVRN
Sbjct: 155 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 214

Query: 62  VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 121
           VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD
Sbjct: 215 VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 274

Query: 122 GVGSYLQLCGLLAKLSIVRETAKAP 147
           GVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 275 GVGSYLQLCGLLAKLSMVRETAKAP 299

[Close]
BLAST of Cla001145 vs. NCBI nr
Match: gi|659096165|ref|XP_008448956.1| (PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis melo])

HSP 1 Score: 295.0 bits (754), Expect = 7.0e-77
Identity = 143/145 (98.62%), Postives = 145/145 (100.00%), Query Frame = 1 

Query: 2   KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 61
           KVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHVKNVVRN
Sbjct: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 246

Query: 62  VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 121
           VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD
Sbjct: 247 VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 306

Query: 122 GVGSYLQLCGLLAKLSIVRETAKAP 147
           GVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 307 GVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]
BLAST of Cla001145 vs. NCBI nr
Match: gi|449460473|ref|XP_004147970.1| (PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 1.3e-75
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 1 

Query: 2   KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 61
           KVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQDNVFKVCDQPHPLHVKNVVRN
Sbjct: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 246

Query: 62  VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 121
           VLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD
Sbjct: 247 VLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 306

Query: 122 GVGSYLQLCGLLAKLSIVRETAKAP 147
           GVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 307 GVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]
BLAST of Cla001145 vs. NCBI nr
Match: gi|778675631|ref|XP_011650438.1| (PREDICTED: replication factor C subunit 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 1.3e-75
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 1 

Query: 2   KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 61
           KVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQDNVFKVCDQPHPLHVKNVVRN
Sbjct: 155 KVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 214

Query: 62  VLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 121
           VLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD
Sbjct: 215 VLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 274

Query: 122 GVGSYLQLCGLLAKLSIVRETAKAP 147
           GVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 275 GVGSYLQLCGLLAKLSMVRETAKAP 299

[Close]
BLAST of Cla001145 vs. NCBI nr
Match: gi|297837097|ref|XP_002886430.1| (hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 287.3 bits (734), Expect = 1.5e-74
Identity = 139/144 (96.53%), Postives = 141/144 (97.92%), Query Frame = 1 

Query: 3   VPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRNV 62
           VPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQ+NVFKVCDQPHPLHVKN+VRNV
Sbjct: 191 VPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNIVRNV 250

Query: 63  LEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDG 122
           LE KFDDAC GLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDG
Sbjct: 251 LESKFDDACHGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDG 310

Query: 123 VGSYLQLCGLLAKLSIVRETAKAP 147
           VGSYLQLCGLLAKLSI RETAKAP
Sbjct: 311 VGSYLQLCGLLAKLSIARETAKAP 334

The following BLAST results are available for this feature:
BLAST of Cla001145 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RFC2_ARATH4.5e-7695.86Replication factor C subunit 2 OS=Arabidopsis thaliana GN=RFC2 PE=1 SV=1[more]
RFC4_ORYSJ2.6e-7188.89Replication factor C subunit 4 OS=Oryza sativa subsp. japonica GN=RFC4 PE=2 SV=2[more]
RFC2_HUMAN7.8e-4461.48Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3[more]
RFC2_MOUSE1.0e-4360.00Replication factor C subunit 2 OS=Mus musculus GN=Rfc2 PE=1 SV=1[more]
RFC2_RAT1.0e-4360.00Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2 SV=1[more]
BLAST of Cla001145 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L763_CUCSA9.2e-7697.24Uncharacterized protein OS=Cucumis sativus GN=Csa_3G038730 PE=4 SV=1[more]
D7KU15_ARALL1.0e-7496.53Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
W9SZ84_9ROSA3.0e-7493.79Replication factor C subunit 2 OS=Morus notabilis GN=L484_010560 PE=4 SV=1[more]
D7TW50_VITVI3.9e-7495.14Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g04140 PE=4 SV=... [more]
A0A087HEH5_ARAAL5.0e-7496.50Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G007400 PE=4 SV=1[more]
BLAST of Cla001145 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659096167|ref|XP_008448957.1|7.0e-7798.62PREDICTED: replication factor C subunit 2 isoform X2 [Cucumis melo][more]
gi|659096165|ref|XP_008448956.1|7.0e-7798.62PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis melo][more]
gi|449460473|ref|XP_004147970.1|1.3e-7597.24PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis sativus][more]
gi|778675631|ref|XP_011650438.1|1.3e-7597.24PREDICTED: replication factor C subunit 2 isoform X2 [Cucumis sativus][more]
gi|297837097|ref|XP_002886430.1|1.5e-7496.53hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp. lyrata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008921DNA_pol3_clamp-load_cplx_C
IPR013748Rep_factorC_C
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU56154watermelon EST collection version 2.0transcribed_cluster
WMU77062watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001145Cla001145.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU77062WMU77062transcribed_cluster
WMU56154WMU56154transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalunknownSSF48019post-AAA+ oligomerization domain-likecoord: 49..140
score: 3.87
IPR013748Replication factor C, C-terminalPFAMPF08542Rep_fac_Ccoord: 50..135
score: 5.2
NoneNo IPR availableGENE3DG3DSA:1.10.8.60coord: 2..50
score: 5.4
NoneNo IPR availableGENE3DG3DSA:1.20.272.10coord: 51..141
score: 2.6
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 2..141
score: 1.3
NoneNo IPR availablePANTHERPTHR11669:SF5REPLICATION FACTOR C SUBUNIT 2coord: 2..141
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001145Melon (DHL92) v3.6.1medwmB004
Cla001145Melon (DHL92) v3.6.1medwmB433
Cla001145Melon (DHL92) v3.6.1medwmB440
Cla001145Silver-seed gourdcarwmB0862
Cla001145Silver-seed gourdcarwmB0865
Cla001145Silver-seed gourdcarwmB0866
Cla001145Cucumber (Chinese Long) v3cucwmB211
Cla001145Cucumber (Chinese Long) v3cucwmB205
Cla001145Cucumber (Chinese Long) v3cucwmB398
Cla001145Watermelon (97103) v2wmwmbB050
Cla001145Watermelon (97103) v2wmwmbB053
Cla001145Watermelon (97103) v2wmwmbB058
Cla001145Wax gourdwgowmB032
Cla001145Wax gourdwgowmB057
Cla001145Wax gourdwgowmB163
Cla001145Watermelon (97103) v1wmwmB049
Cla001145Cucumber (Gy14) v1cgywmB547
Cla001145Cucumber (Gy14) v1cgywmB584
Cla001145Cucumber (Gy14) v1cgywmB585
Cla001145Cucurbita maxima (Rimu)cmawmB254
Cla001145Cucurbita maxima (Rimu)cmawmB297
Cla001145Cucurbita maxima (Rimu)cmawmB785
Cla001145Cucurbita maxima (Rimu)cmawmB790
Cla001145Cucurbita moschata (Rifu)cmowmB245
Cla001145Cucurbita moschata (Rifu)cmowmB291
Cla001145Cucurbita moschata (Rifu)cmowmB778
Cla001145Cucurbita moschata (Rifu)cmowmB784
Cla001145Wild cucumber (PI 183967)cpiwmB195
Cla001145Wild cucumber (PI 183967)cpiwmB202
Cla001145Wild cucumber (PI 183967)cpiwmB381
Cla001145Melon (DHL92) v3.5.1mewmB006
Cla001145Melon (DHL92) v3.5.1mewmB449
Cla001145Watermelon (Charleston Gray)wcgwmB001
Cla001145Watermelon (Charleston Gray)wcgwmB053
Cla001145Watermelon (Charleston Gray)wcgwmB058
Cla001145Watermelon (Charleston Gray)wcgwmB119
Cla001145Cucumber (Chinese Long) v2cuwmB195
Cla001145Cucumber (Chinese Long) v2cuwmB202
Cla001145Cucumber (Chinese Long) v2cuwmB375
Cla001145Cucurbita pepo (Zucchini)cpewmB169
Cla001145Cucurbita pepo (Zucchini)cpewmB207
Cla001145Cucurbita pepo (Zucchini)cpewmB828
Cla001145Cucurbita pepo (Zucchini)cpewmB835
Cla001145Bottle gourd (USVL1VR-Ls)lsiwmB008
Cla001145Bottle gourd (USVL1VR-Ls)lsiwmB428
Cla001145Bottle gourd (USVL1VR-Ls)lsiwmB431
Cla001145Cucumber (Gy14) v2cgybwmB184
Cla001145Cucumber (Gy14) v2cgybwmB190
Cla001145Cucumber (Gy14) v2cgybwmB348