Cla001131 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001131
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Transcription initiation factor TFIID subunit 1-A (AHRD V1 ***- TAF1A_ARATH); contains Interpro domain(s) IPR000626 Ubiquitin
Location	Chr0 : 7047231 .. 7047470 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCCTCTGAAATAATTAAATTATTTTATTCTGGGAAGGAGCTTGAAAGAGAAAAGTCTTTGGCTGCCCAAAACGTGCAACCGAATTCCTTACTTCATCTCGTTCGTTCGAAAATATATATAATGCCAAGGGCACAAAATTTGCGTGGTGAAAATAGATCTGTGAGATCTCCTGGAGCATTCAAAAAGAAATCTGATCTTTCTGTGAAAGACGGACGCGTTTTTTTGATGGAGTAA

mRNA sequence

ATGAAGCCCTCTGAAATAATTAAATTATTTTATTCTGGGAAGGAGCTTGAAAGAGAAAAGTCTTTGGCTGCCCAAAACGTGCAACCGAATTCCTTACTTCATCTCGTTCGTTCGAAAATATATATAATGCCAAGGGCACAAAATTTGCGTGGTGAAAATAGATCTGTGAGATCTCCTGGAGCATTCAAAAAGAAATCTGATCTTTCTGTGAAAGACGGACGCGTTTTTTTGATGGAGTAA

Coding sequence (CDS)

ATGAAGCCCTCTGAAATAATTAAATTATTTTATTCTGGGAAGGAGCTTGAAAGAGAAAAGTCTTTGGCTGCCCAAAACGTGCAACCGAATTCCTTACTTCATCTCGTTCGTTCGAAAATATATATAATGCCAAGGGCACAAAATTTGCGTGGTGAAAATAGATCTGTGAGATCTCCTGGAGCATTCAAAAAGAAATCTGATCTTTCTGTGAAAGACGGACGCGTTTTTTTGATGGAGTAA

Protein sequence

MKPSEIIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRAQNLRGENRSVRSPGAFKKKSDLSVKDGRVFLME

Homology

[Close]

BLAST of Cla001131 vs. Swiss-Prot
Match: TAF1_ARATH (Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana GN=TAF1 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 8.8e-26
Identity = 55/78 (70.51%), Postives = 65/78 (83.33%), Query Frame = 1


Query: 2   KPSEIIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRAQNLRGENRSVRSPGA 61
           K +E +K+FY GKEL+ EKSLAAQNVQPNSL+HL+R+K+++ P AQ L GEN+S+R PGA
Sbjct: 697 KETEAVKMFYKGKELDDEKSLAAQNVQPNSLVHLIRTKVHLWPWAQKLPGENKSLRPPGA 756

Query: 62  FKKKSDLSVKDGRVFLME 80
           FKKKSDLS KDG VFLME
Sbjct: 757 FKKKSDLSTKDGHVFLME 774

[Close]

BLAST of Cla001131 vs. Swiss-Prot
Match: TAF1B_ARATH (Transcription initiation factor TFIID subunit 1b OS=Arabidopsis thaliana GN=TAF1B PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-24
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 2   KPSEIIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRAQNLRGENRSVRSPGA 61
           K +E +K+FY GKELE EKSLA QNVQPNSL+HL+R+K+++ P AQ L GEN+S+R PGA
Sbjct: 610 KETEAVKMFYMGKELEDEKSLAEQNVQPNSLVHLLRTKVHLWPWAQKLPGENKSLRPPGA 669

Query: 62  FKKKSDLSVKDGRVFLME 80
           FKKKSDLS +DG VFLME
Sbjct: 670 FKKKSDLSNQDGHVFLME 687

[Close]

BLAST of Cla001131 vs. Swiss-Prot
Match: TAF1_ORYSJ (Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica GN=TAF1 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.3e-24
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = 1


Query: 2   KPSEIIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRAQNLRGENRSVRSPGA 61
           KPSE IKLF SGKEL+ + SLA QNV+PNS+LH+VR++I++ P+AQ L GEN+ +R PGA
Sbjct: 672 KPSEKIKLFCSGKELQDDISLAMQNVRPNSILHVVRTEIHLWPKAQRLPGENKPLRPPGA 731

Query: 62  FKKKSDLSVKDGRVFLME 80
           F+KKSDLSVKDG VFLME
Sbjct: 732 FRKKSDLSVKDGHVFLME 749

[Close]

BLAST of Cla001131 vs. TrEMBL
Match: A0A0A0KA05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G357030 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-34
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1   MKPSEIIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRAQNLRGENRSVRSPG 60
           MKPSE+IKLFYSGKELEREKSLAAQNVQPNSLLHLVRS+IYIMPRAQNLRGENRSVRSPG
Sbjct: 703 MKPSEMIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSQIYIMPRAQNLRGENRSVRSPG 762

Query: 61  AFKKKSDLSVKDGRVFLME 80
           AFKKKSDLSVKDGRVFLME
Sbjct: 763 AFKKKSDLSVKDGRVFLME 781

[Close]

BLAST of Cla001131 vs. TrEMBL
Match: M5XKR9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000092mg PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.5e-27
Identity = 62/78 (79.49%), Postives = 71/78 (91.03%), Query Frame = 1


Query: 2   KPSEIIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRAQNLRGENRSVRSPGA 61
           KPSE +KLFY GKELE +KSLAAQNVQPNSLLHLVR+KIY++P+AQ + GEN+S+R PGA
Sbjct: 634 KPSETVKLFYLGKELEDDKSLAAQNVQPNSLLHLVRTKIYLLPKAQKIPGENKSLRPPGA 693

Query: 62  FKKKSDLSVKDGRVFLME 80
           FKKKSDLSVKDG VFLME
Sbjct: 694 FKKKSDLSVKDGHVFLME 711

[Close]

BLAST of Cla001131 vs. TrEMBL
Match: F6H596_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03940 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.3e-27
Identity = 62/78 (79.49%), Postives = 71/78 (91.03%), Query Frame = 1


Query: 2   KPSEIIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRAQNLRGENRSVRSPGA 61
           KPSE++K+FY+GKELE  KSLAAQNVQPNSLLHLVR+KI++ PRAQ L GEN+S+R PGA
Sbjct: 678 KPSEMVKIFYTGKELEDHKSLAAQNVQPNSLLHLVRTKIHLWPRAQKLPGENKSLRPPGA 737

Query: 62  FKKKSDLSVKDGRVFLME 80
           FKKKSDLSVKDG VFLME
Sbjct: 738 FKKKSDLSVKDGHVFLME 755

[Close]

BLAST of Cla001131 vs. TrEMBL
Match: A0A067LA06_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24953 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.6e-27
Identity = 60/78 (76.92%), Postives = 72/78 (92.31%), Query Frame = 1


Query: 2   KPSEIIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRAQNLRGENRSVRSPGA 61
           KPSE++K+FY GKELE +KSLAAQNVQPNSLLHLVR+KI+++PRAQ + GEN+S+R PGA
Sbjct: 697 KPSEMVKIFYLGKELEDQKSLAAQNVQPNSLLHLVRTKIHLLPRAQRIPGENKSLRPPGA 756

Query: 62  FKKKSDLSVKDGRVFLME 80
           FKKKSDLSVKDG +FLME
Sbjct: 757 FKKKSDLSVKDGHIFLME 774

[Close]

BLAST of Cla001131 vs. TrEMBL
Match: B9S9F7_RICCO (Transcription initiation factor tfiid, putative OS=Ricinus communis GN=RCOM_0884950 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.7e-26
Identity = 59/78 (75.64%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 2   KPSEIIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRAQNLRGENRSVRSPGA 61
           KP E++K+FY GKELE  KSLAAQNVQPNSLLHLVR+KI+++PRAQ + GEN+S+R PGA
Sbjct: 683 KPLEMVKIFYLGKELEDHKSLAAQNVQPNSLLHLVRTKIHLLPRAQRIPGENKSLRPPGA 742

Query: 62  FKKKSDLSVKDGRVFLME 80
           FKKKSDLSVKDG +FLME
Sbjct: 743 FKKKSDLSVKDGHIFLME 760

[Close]

BLAST of Cla001131 vs. TAIR10
Match: AT1G32750.1 (AT1G32750.1 HAC13 protein (HAC13))

HSP 1 Score: 117.1 bits (292), Expect = 5.0e-27
Identity = 55/78 (70.51%), Postives = 65/78 (83.33%), Query Frame = 1


Query: 2   KPSEIIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRAQNLRGENRSVRSPGA 61
           K +E +K+FY GKEL+ EKSLAAQNVQPNSL+HL+R+K+++ P AQ L GEN+S+R PGA
Sbjct: 697 KETEAVKMFYKGKELDDEKSLAAQNVQPNSLVHLIRTKVHLWPWAQKLPGENKSLRPPGA 756

Query: 62  FKKKSDLSVKDGRVFLME 80
           FKKKSDLS KDG VFLME
Sbjct: 757 FKKKSDLSTKDGHVFLME 774

[Close]

BLAST of Cla001131 vs. TAIR10
Match: AT3G19040.1 (AT3G19040.1 histone acetyltransferase of the TAFII250 family 2)

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-25
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 2   KPSEIIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRAQNLRGENRSVRSPGA 61
           K +E +K+FY GKELE EKSLA QNVQPNSL+HL+R+K+++ P AQ L GEN+S+R PGA
Sbjct: 610 KETEAVKMFYMGKELEDEKSLAEQNVQPNSLVHLLRTKVHLWPWAQKLPGENKSLRPPGA 669

Query: 62  FKKKSDLSVKDGRVFLME 80
           FKKKSDLS +DG VFLME
Sbjct: 670 FKKKSDLSNQDGHVFLME 687

[Close]

BLAST of Cla001131 vs. NCBI nr
Match: gi|778727071|ref|XP_011659205.1| (PREDICTED: transcription initiation factor TFIID subunit 1 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 2.3e-34
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1   MKPSEIIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRAQNLRGENRSVRSPG 60
           MKPSE+IKLFYSGKELEREKSLAAQNVQPNSLLHLVRS+IYIMPRAQNLRGENRSVRSPG
Sbjct: 703 MKPSEMIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSQIYIMPRAQNLRGENRSVRSPG 762

Query: 61  AFKKKSDLSVKDGRVFLME 80
           AFKKKSDLSVKDGRVFLME
Sbjct: 763 AFKKKSDLSVKDGRVFLME 781

[Close]

BLAST of Cla001131 vs. NCBI nr
Match: gi|659116430|ref|XP_008458069.1| (PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 8.8e-34
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 1


Query: 1   MKPSEIIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRAQNLRGENRSVRSPG 60
           MKPSE+IKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPR QNLRGENRSVRSPG
Sbjct: 538 MKPSEMIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRTQNLRGENRSVRSPG 597

Query: 61  AFKKKSDLSVKDGRVFLME 80
           AFKKKSDLSVKDG VFLME
Sbjct: 598 AFKKKSDLSVKDGHVFLME 616

[Close]

BLAST of Cla001131 vs. NCBI nr
Match: gi|659116422|ref|XP_008458065.1| (PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 8.8e-34
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 1


Query: 1   MKPSEIIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRAQNLRGENRSVRSPG 60
           MKPSE+IKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPR QNLRGENRSVRSPG
Sbjct: 706 MKPSEMIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRTQNLRGENRSVRSPG 765

Query: 61  AFKKKSDLSVKDGRVFLME 80
           AFKKKSDLSVKDG VFLME
Sbjct: 766 AFKKKSDLSVKDGHVFLME 784

[Close]

BLAST of Cla001131 vs. NCBI nr
Match: gi|596285638|ref|XP_007225488.1| (hypothetical protein PRUPE_ppa000092mg [Prunus persica])

HSP 1 Score: 129.0 bits (323), Expect = 3.6e-27
Identity = 62/78 (79.49%), Postives = 71/78 (91.03%), Query Frame = 1


Query: 2   KPSEIIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRAQNLRGENRSVRSPGA 61
           KPSE +KLFY GKELE +KSLAAQNVQPNSLLHLVR+KIY++P+AQ + GEN+S+R PGA
Sbjct: 634 KPSETVKLFYLGKELEDDKSLAAQNVQPNSLLHLVRTKIYLLPKAQKIPGENKSLRPPGA 693

Query: 62  FKKKSDLSVKDGRVFLME 80
           FKKKSDLSVKDG VFLME
Sbjct: 694 FKKKSDLSVKDGHVFLME 711

[Close]

BLAST of Cla001131 vs. NCBI nr
Match: gi|645223975|ref|XP_008218889.1| (PREDICTED: transcription initiation factor TFIID subunit 1 [Prunus mume])

HSP 1 Score: 129.0 bits (323), Expect = 3.6e-27
Identity = 62/78 (79.49%), Postives = 71/78 (91.03%), Query Frame = 1


Query: 2   KPSEIIKLFYSGKELEREKSLAAQNVQPNSLLHLVRSKIYIMPRAQNLRGENRSVRSPGA 61
           KPSE +KLFY GKELE +KSLAAQNVQPNSLLHLVR+KIY++P+AQ + GEN+S+R PGA
Sbjct: 692 KPSETVKLFYLGKELEDDKSLAAQNVQPNSLLHLVRTKIYLLPKAQKIPGENKSLRPPGA 751

Query: 62  FKKKSDLSVKDGRVFLME 80
           FKKKSDLSVKDG VFLME
Sbjct: 752 FKKKSDLSVKDGHVFLME 769

The following BLAST results are available for this feature:

BLAST of Cla001131 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TAF1_ARATH	8.8e-26	70.51	Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana GN=TAF1 ...	[more]
TAF1B_ARATH	2.2e-24	69.23	Transcription initiation factor TFIID subunit 1b OS=Arabidopsis thaliana GN=TAF1...	[more]
TAF1_ORYSJ	6.3e-24	69.23	Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica ...	[more]

BLAST of Cla001131 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA05_CUCSA	1.6e-34	97.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G357030 PE=4 SV=1	[more]
M5XKR9_PRUPE	2.5e-27	79.49	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000092mg PE=4 SV=1	[more]
F6H596_VITVI	4.3e-27	79.49	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g03940 PE=4 SV=...	[more]
A0A067LA06_JATCU	5.6e-27	76.92	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24953 PE=4 SV=1	[more]
B9S9F7_RICCO	4.7e-26	75.64	Transcription initiation factor tfiid, putative OS=Ricinus communis GN=RCOM_0884...	[more]

BLAST of Cla001131 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32750.1	5.0e-27	70.51	HAC13 protein (HAC13)	[more]
AT3G19040.1	1.2e-25	69.23	histone acetyltransferase of the TAFII250 family 2	[more]

BLAST of Cla001131 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778727071\|ref\|XP_011659205.1\|	2.3e-34	97.47	PREDICTED: transcription initiation factor TFIID subunit 1 [Cucumis sativus]	[more]
gi\|659116430\|ref\|XP_008458069.1\|	8.8e-34	96.20	PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Cucumis m...	[more]
gi\|659116422\|ref\|XP_008458065.1\|	8.8e-34	96.20	PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Cucumis m...	[more]
gi\|596285638\|ref\|XP_007225488.1\|	3.6e-27	79.49	hypothetical protein PRUPE_ppa000092mg [Prunus persica]	[more]
gi\|645223975\|ref\|XP_008218889.1\|	3.6e-27	79.49	PREDICTED: transcription initiation factor TFIID subunit 1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006446	regulation of translational initiation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001131	Cla001131.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin domain	PFAM	PF00240	ubiquitin	coord: 4..39 score: 1.
IPR000626	Ubiquitin domain	PROFILE	PS50053	UBIQUITIN_2	coord: 3..36 score:
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 5..38 score: 2.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001131	Watermelon (97103) v1	wmwmB000