Cla001110 (gene) Watermelon (97103) v1

Overview
NameCla001110
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1); contains Interpro domain(s) IPR018619 Hyccin
LocationChr10 : 12406191 .. 12406871 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTTCCACCGGAATCCTTCCCTCAACAACCGCCATTCCTCTTCCCCTTCCTCCTCCGCTTCCTCCACCACCGCCCCTCACAATCCTTCCGCCTCCGCCGCCACCGCCACCGCCGACAGCGACCCTATGCACTCCTGGTGGGAGTCCGTTTCCAAAGCCCGTTCTCGTATCCACGCCCTTTCCTCTATCCTTCCCCCTCATTCCGACTCTTTTTTCCTCTCCTCCGTCGCCGATTCCGACCGTCCGGCTCTCTCTCTTTTGTCATCTCATGATGCTTACTCCGCCATTTCCTCTGCCCTCTCCTCCTCCCTCTCTGGATCTGGTTCTGACCCTCTTTGCCATTGGCTTTACGATACTTTTCTTCCGATCCCCATCTCCGCCTTGTTGTTCTTTCTTTCCTTCCTCTTCTTTCCTCCTTGTACCTTTCTCGCGTCCATTCTACTTCTTCCGATTCCCCTTCTCTCCCTTCCCTCGCCGGCTTTGAGGCTGTGCTTCTCGCTCTTTATTCCTCTGAGGTTAAGTCTCGGGCGGGGAAGCCTGTTCTTGTCTCGATTCCTGATCTTTCTCAGCCTTCTCTCTACCATTCTCCTCGGAATAAGCCCAATTCTGGTGCTCAAGCGCAACTCAGGCCGTCTGTTGGGGTTCTTTCCCCTTCCCTTGAACCACAGAACGCGGTGA

mRNA sequence

ATGGACTTCCACCGGAATCCTTCCCTCAACAACCGCCATTCCTCTTCCCCTTCCTCCTCCGCTTCCTCCACCACCGCCCCTCACAATCCTTCCGCCTCCGCCGCCACCGCCACCGCCGACAGCGACCCTATGCACTCCTGGTGGGAGTCCGTTTCCAAAGCCCGTTCTCGTATCCACGCCCTTTCCTCTATCCTTCCCCCTCATTCCGACTCTTTTTTCCTCTCCTCCGTCGCCGATTCCGACCGTCCGGCTCTCTCTCTTTTGTCATCTCATGATGCTTACTCCGCCATTTCCTCTGCCCTCTCCTCCTCCCTCTCTGGATCTGGTTCTGACCCTCTTTGCCATTGGCTTTACGATACTTTTCTTCCGATCCCCATCTCCGCCTTGTTGTTCTTTCTTTCCTTCCTCTTCTTTCCTCCTTGTACCTTTCTCGCGTCCATTCTACTTCTTCCGATTCCCCTTCTCTCCCTTCCCTCGCCGGCTTTGAGGCTGTGCTTCTCGCTCTTTATTCCTCTGAGGTTAAGTCTCGGGCGGGGAAGCCTGTTCTTGTCTCGATTCCTGATCTTTCTCAGCCTTCTCTCTACCATTCTCCTCGGAATAAGCCCAATTCTGGTGCTCAAGCGCAACTCAGGCCGTCTGTTGGGGTTCTTTCCCCTTCCCTTGAACCACAGAACGCGGTGA

Coding sequence (CDS)

ATGGACTTCCACCGGAATCCTTCCCTCAACAACCGCCATTCCTCTTCCCCTTCCTCCTCCGCTTCCTCCACCACCGCCCCTCACAATCCTTCCGCCTCCGCCGCCACCGCCACCGCCGACAGCGACCCTATGCACTCCTGGTGGGAGTCCGTTTCCAAAGCCCGTTCTCGTATCCACGCCCTTTCCTCTATCCTTCCCCCTCATTCCGACTCTTTTTTCCTCTCCTCCGTCGCCGATTCCGACCGTCCGGCTCTCTCTCTTTTGTCATCTCATGATGCTTACTCCGCCATTTCCTCTGCCCTCTCCTCCTCCCTCTCTGGATCTGGTTCTGACCCTCTTTGCCATTGGCTTTACGATACTTTTCTTCCGATCCCCATCTCCGCCTTGTTGTTCTTTCTTTCCTTCCTCTTCTTTCCTCCTTGTACCTTTCTCGCGTCCATTCTACTTCTTCCGATTCCCCTTCTCTCCCTTCCCTCGCCGGCTTTGAGGCTGTGCTTCTCGCTCTTTATTCCTCTGAGGTTAAGTCTCGGGCGGGGAAGCCTGTTCTTGTCTCGATTCCTGATCTTTCTCAGCCTTCTCTCTACCATTCTCCTCGGAATAAGCCCAATTCTGGTGCTCAAGCGCAACTCAGGCCGTCTGTTGGGGTTCTTTCCCCTTCCCTTGAACCACAGAACGCGGTGA

Protein sequence

MDFHRNPSLNNRHSSSPSSSASSTTAPHNPSASAATATADSDPMHSWWESVSKARSRIHALSSILPPHSDSFFLSSVADSDRPALSLLSSHDAYSAISSALSSSLSGSGSDPLCHWLYDTFLPIPISALLFFLSFLFFPPCTFLASILLLPIPLLSLPSPALRLCFSLFIPLRLSLGRGSLFLSRFLIFLSLLSTILLGISPILVLKRNSGRLLGFFPLPLNHRTR
Homology
[Close]
BLAST of Cla001110 vs. TrEMBL
Match: A0A0A0KZ90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G107390 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.9e-57
Identity = 125/163 (76.69%), Postives = 133/163 (81.60%), Query Frame = 1 

Query: 1   MDFHRNPSLNNRHSSSP-SSSASSTTAPHNPSASAATATADSDPMHSWWESVSKARSRIH 60
           MDFHRNPS+NNRHSSSP SSSASSTTA HNP+   ATA+AD+DPMHSWWESVSKARSRIH
Sbjct: 1   MDFHRNPSINNRHSSSPSSSSASSTTALHNPT---ATASADTDPMHSWWESVSKARSRIH 60

Query: 61  ALSSILPPHSDSFFLSSVADSDRPALSLLSSHDAYSAISSALSSSLSGSGSDPLCHWLYD 120
           ALSSILPPHSDSFFLSSVADSDRPALSLLSSHDAYS ISSALSSSLSGSGSDPLCHWLYD
Sbjct: 61  ALSSILPPHSDSFFLSSVADSDRPALSLLSSHDAYSVISSALSSSLSGSGSDPLCHWLYD 120

Query: 121 TFLPIPISALLFFLSFLFFPPCTFLASILLLPIPLLSLPSPAL 163
           TFL       L  LSFL       L+S+ L  +   S  SP+L
Sbjct: 121 TFLSSDPHLRLVVLSFL-----PLLSSLYLSRVHSTSSDSPSL 155

[Close]
BLAST of Cla001110 vs. TrEMBL
Match: W9QVH9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017230 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-36
Identity = 99/169 (58.58%), Postives = 113/169 (66.86%), Query Frame = 1 

Query: 1   MDFHRNPSL---NNRHSSSPSSSASSTTAPH-NP----SASAATATADSDPMHSWWESVS 60
           MDFH +      N+  SS+ S SA++TT P+ NP    +A+AA A   SDPMHSWWES+S
Sbjct: 1   MDFHHHHQTLASNSPSSSTSSISAAATTYPNGNPISSAAATAAAAAPSSDPMHSWWESIS 60

Query: 61  KARSRIHALSSILPPHSDSFFLSSVADSDRPALSLLSSHDAYSAISSALSSSLSGSGSDP 120
           KARSRIH+LSSILP  S S  LSS+ADSDRPALSLLSS  AYSA+SSALS   SGSGSDP
Sbjct: 61  KARSRIHSLSSILPDPSLSLSLSSLADSDRPALSLLSSSLAYSALSSALSDPHSGSGSDP 120

Query: 121 LCHWLYDTFLPIPISALLFFLSFLFFPPCTFLASILLLPIPLLSLPSPA 162
           LCHWLYDTFL       L   SFL      +L+ I  L     SLPS A
Sbjct: 121 LCHWLYDTFLSSDPHLRLVVFSFLPLISGLYLSRIHSLSTDSPSLPSLA 169

[Close]
BLAST of Cla001110 vs. TrEMBL
Match: M5XU59_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007184mg PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.4e-35
Identity = 93/165 (56.36%), Postives = 111/165 (67.27%), Query Frame = 1 

Query: 1   MDFHRNPSLNNRHSSSPSSSASSTTAP---HNPSASAATATADSDPMHSWWESVSKARSR 60
           MDFHRN       +SS SS+ ++TT P    NP+ S+   + D DPMHSWWES+SKARSR
Sbjct: 1   MDFHRNHHSTTSPTSSASSTTTTTTTPIPNPNPNPSSNCISTD-DPMHSWWESISKARSR 60

Query: 61  IHALSSILPPHSDSFFLSSVADSDRPALSLLSSHDAYSAISSALSSSLSGSGSDPLCHWL 120
           IH+LSS+LPP S S  L S+ADSDRPALSLLSS ++Y A+SSAL S LSGSGSDPLCHWL
Sbjct: 61  IHSLSSLLPP-SLSSCLCSLADSDRPALSLLSSLESYDAVSSALFSPLSGSGSDPLCHWL 120

Query: 121 YDTFLPIPISALLFFLSFLFFPPCTFLASILLLPIPLLSLPSPAL 163
           YDTFL       L   SFL       L+ + L  +  LS  SP+L
Sbjct: 121 YDTFLSSDPHLRLVVFSFL-----PVLSGLYLSRVHSLSSDSPSL 158

[Close]
BLAST of Cla001110 vs. TrEMBL
Match: B9GZG7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s01480g PE=4 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 1.8e-33
Identity = 82/133 (61.65%), Postives = 99/133 (74.44%), Query Frame = 1 

Query: 10  NNRHSSSPSSSASSTTAPHNPSASAATATADSDPMHSWWESVSKARSRIHALSSILPP-- 69
           NN+++ SPSSS+S+++ PH P+A+AA  T  +DP+ SWWESVSKARSRI +LSSILP   
Sbjct: 4   NNKNNYSPSSSSSTSSTPH-PAAAAAATTTTTDPVQSWWESVSKARSRILSLSSILPSLP 63

Query: 70  ----HSDSFFLSSVADSDRPALSLLSSHDAYSAISSALSSSLSGSGSDPLCHWLYDTFLP 129
                S SF LSS+A+SDRPALS LSS DAYS +SS+LSS  SGSGSDPLC WLYDT+L 
Sbjct: 64  SSSSSSSSFSLSSLAESDRPALSFLSSPDAYSLLSSSLSSPSSGSGSDPLCQWLYDTYLS 123

Query: 130 IPISALLFFLSFL 137
                 L  LSFL
Sbjct: 124 SDPDLRLIVLSFL 135

[Close]
BLAST of Cla001110 vs. TrEMBL
Match: A0A061E3B9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007521 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.0e-33
Identity = 88/136 (64.71%), Postives = 96/136 (70.59%), Query Frame = 1 

Query: 1   MDFHRNPSLNNRHSSSPSSSASSTTAPHNPSASAATATADSDPMHSWWESVSKARSRIHA 60
           MDF  NPS N   S S SSS SS+TA H P ++    T D+DPMHSWWESVSK RSRI +
Sbjct: 1   MDFPHNPSTN---SPSSSSSTSSSTAHHPPPST----TTDNDPMHSWWESVSKQRSRILS 60

Query: 61  LSSILPPHSDSFFLSSVADSDRPALSLLSSHDAYSAISSALSSSLSGSGSDPLCHWLYDT 120
           LSS+LP  SD   LSS+ADSDRPALSLLSS  AYS ISSALSS  SGSGSDPLC WLY+T
Sbjct: 61  LSSLLP--SDGLTLSSLADSDRPALSLLSSPAAYSLISSALSSPSSGSGSDPLCQWLYET 120

Query: 121 FLPIPISALLFFLSFL 137
           F        L  LSFL
Sbjct: 121 FQSSDPHLRLLVLSFL 127

[Close]
BLAST of Cla001110 vs. NCBI nr
Match: gi|449438789|ref|XP_004137170.1| (PREDICTED: uncharacterized protein LOC101215901 [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 5.6e-57
Identity = 125/163 (76.69%), Postives = 133/163 (81.60%), Query Frame = 1 

Query: 1   MDFHRNPSLNNRHSSSP-SSSASSTTAPHNPSASAATATADSDPMHSWWESVSKARSRIH 60
           MDFHRNPS+NNRHSSSP SSSASSTTA HNP+   ATA+AD+DPMHSWWESVSKARSRIH
Sbjct: 1   MDFHRNPSINNRHSSSPSSSSASSTTALHNPT---ATASADTDPMHSWWESVSKARSRIH 60

Query: 61  ALSSILPPHSDSFFLSSVADSDRPALSLLSSHDAYSAISSALSSSLSGSGSDPLCHWLYD 120
           ALSSILPPHSDSFFLSSVADSDRPALSLLSSHDAYS ISSALSSSLSGSGSDPLCHWLYD
Sbjct: 61  ALSSILPPHSDSFFLSSVADSDRPALSLLSSHDAYSVISSALSSSLSGSGSDPLCHWLYD 120

Query: 121 TFLPIPISALLFFLSFLFFPPCTFLASILLLPIPLLSLPSPAL 163
           TFL       L  LSFL       L+S+ L  +   S  SP+L
Sbjct: 121 TFLSSDPHLRLVVLSFL-----PLLSSLYLSRVHSTSSDSPSL 155

[Close]
BLAST of Cla001110 vs. NCBI nr
Match: gi|659111243|ref|XP_008455651.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103495769 [Cucumis melo])

HSP 1 Score: 223.0 bits (567), Expect = 5.2e-55
Identity = 124/166 (74.70%), Postives = 134/166 (80.72%), Query Frame = 1 

Query: 1   MDFHRNPSLNNRHSSSP-SSSASSTTAPH--NPSASA-ATATADSDPMHSWWESVSKARS 60
           MDFHRNPS+NNRHSSSP SSSASSTT P   NP+A+A A+A+AD+DPMHSWWESVSKARS
Sbjct: 1   MDFHRNPSINNRHSSSPSSSSASSTTRPFXTNPTATASASASADTDPMHSWWESVSKARS 60

Query: 61  RIHALSSILPPHSDSFFLSSVADSDRPALSLLSSHDAYSAISSALSSSLSGSGSDPLCHW 120
           RIHALSSILPPHSDSFFLSSVADSDRPALSLLSSHDAYS ISSALSSS SGSGSDPLCHW
Sbjct: 61  RIHALSSILPPHSDSFFLSSVADSDRPALSLLSSHDAYSVISSALSSSHSGSGSDPLCHW 120

Query: 121 LYDTFLPIPISALLFFLSFLFFPPCTFLASILLLPIPLLSLPSPAL 163
           LYDTFL       L  LSFL       L+S+ L  +   S  SP+L
Sbjct: 121 LYDTFLSSDPHLRLVVLSFL-----PLLSSLYLSRVHSTSSDSPSL 161

[Close]
BLAST of Cla001110 vs. NCBI nr
Match: gi|1009150292|ref|XP_015892942.1| (PREDICTED: uncharacterized protein LOC107427110 [Ziziphus jujuba])

HSP 1 Score: 165.6 bits (418), Expect = 9.9e-38
Identity = 97/161 (60.25%), Postives = 111/161 (68.94%), Query Frame = 1 

Query: 1   MDFHRNPSLNNRHSSSPSSSASSTTAPHNPSASAATATADSDPMHSWWESVSKARSRIHA 60
           MDFH+N  L N  SSS SS++S TT P+     A  A+   DPMHSWWES+SKARSRIH+
Sbjct: 1   MDFHQN-HLANSPSSSSSSTSSMTTTPNPNGTGAVAASTTDDPMHSWWESISKARSRIHS 60

Query: 61  LSSILPPHSDSFFLSSVADSDRPALSLLSSHDAYSAISSALSSSLSGSGSDPLCHWLYDT 120
           LSSIL P S S  LSS+ADSDRPALSLLSS DAY+A+ S+LSS LSGSGSDPLCHWLYDT
Sbjct: 61  LSSILDP-SVSPSLSSLADSDRPALSLLSSPDAYAAVCSSLSSPLSGSGSDPLCHWLYDT 120

Query: 121 FLPIPISALLFFLSFLFFPPCTFLASILLLPIPLLSLPSPA 162
           FL       L   SF+     T+L+ I  L     SLPS A
Sbjct: 121 FLSSDPHLRLVVHSFIPLLSGTYLSRIHSLSSDSPSLPSLA 159

[Close]
BLAST of Cla001110 vs. NCBI nr
Match: gi|1009150294|ref|XP_015892943.1| (PREDICTED: uncharacterized protein LOC107427111 [Ziziphus jujuba])

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 97/161 (60.25%), Postives = 111/161 (68.94%), Query Frame = 1 

Query: 1   MDFHRNPSLNNRHSSSPSSSASSTTAPHNPSASAATATADSDPMHSWWESVSKARSRIHA 60
           MDF +NP L N  SSS SS++S TT P+     A  A+   DPMHSWWES+SKARSRIH+
Sbjct: 1   MDFPQNP-LANSPSSSSSSTSSMTTTPNPNGTGAVAASTTDDPMHSWWESISKARSRIHS 60

Query: 61  LSSILPPHSDSFFLSSVADSDRPALSLLSSHDAYSAISSALSSSLSGSGSDPLCHWLYDT 120
           LSSIL P S S  LSS+ADSDRPALSLLSS DAY+A+ S+LSS LSGSGSDPLCHWLYDT
Sbjct: 61  LSSILDP-SVSPSLSSLADSDRPALSLLSSPDAYAAVCSSLSSPLSGSGSDPLCHWLYDT 120

Query: 121 FLPIPISALLFFLSFLFFPPCTFLASILLLPIPLLSLPSPA 162
           FL       L   SF+     T+L+ I  L     SLPS A
Sbjct: 121 FLSSDPHLRLVVHSFIPLLSGTYLSRIHSLSSDSPSLPSLA 159

[Close]
BLAST of Cla001110 vs. NCBI nr
Match: gi|703090815|ref|XP_010094185.1| (hypothetical protein L484_017230 [Morus notabilis])

HSP 1 Score: 161.4 bits (407), Expect = 1.9e-36
Identity = 99/169 (58.58%), Postives = 113/169 (66.86%), Query Frame = 1 

Query: 1   MDFHRNPSL---NNRHSSSPSSSASSTTAPH-NP----SASAATATADSDPMHSWWESVS 60
           MDFH +      N+  SS+ S SA++TT P+ NP    +A+AA A   SDPMHSWWES+S
Sbjct: 1   MDFHHHHQTLASNSPSSSTSSISAAATTYPNGNPISSAAATAAAAAPSSDPMHSWWESIS 60

Query: 61  KARSRIHALSSILPPHSDSFFLSSVADSDRPALSLLSSHDAYSAISSALSSSLSGSGSDP 120
           KARSRIH+LSSILP  S S  LSS+ADSDRPALSLLSS  AYSA+SSALS   SGSGSDP
Sbjct: 61  KARSRIHSLSSILPDPSLSLSLSSLADSDRPALSLLSSSLAYSALSSALSDPHSGSGSDP 120

Query: 121 LCHWLYDTFLPIPISALLFFLSFLFFPPCTFLASILLLPIPLLSLPSPA 162
           LCHWLYDTFL       L   SFL      +L+ I  L     SLPS A
Sbjct: 121 LCHWLYDTFLSSDPHLRLVVFSFLPLISGLYLSRIHSLSTDSPSLPSLA 169

The following BLAST results are available for this feature:
BLAST of Cla001110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ90_CUCSA3.9e-5776.69Uncharacterized protein OS=Cucumis sativus GN=Csa_4G107390 PE=4 SV=1[more]
W9QVH9_9ROSA1.3e-3658.58Uncharacterized protein OS=Morus notabilis GN=L484_017230 PE=4 SV=1[more]
M5XU59_PRUPE1.4e-3556.36Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007184mg PE=4 SV=1[more]
B9GZG7_POPTR1.8e-3361.65Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s01480g PE=4 SV=2[more]
A0A061E3B9_THECC3.0e-3364.71Uncharacterized protein OS=Theobroma cacao GN=TCM_007521 PE=4 SV=1[more]
BLAST of Cla001110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438789|ref|XP_004137170.1|5.6e-5776.69PREDICTED: uncharacterized protein LOC101215901 [Cucumis sativus][more]
gi|659111243|ref|XP_008455651.1|5.2e-5574.70PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103495769 [Cucumis me... [more]
gi|1009150292|ref|XP_015892942.1|9.9e-3860.25PREDICTED: uncharacterized protein LOC107427110 [Ziziphus jujuba][more]
gi|1009150294|ref|XP_015892943.1|1.7e-3760.25PREDICTED: uncharacterized protein LOC107427111 [Ziziphus jujuba][more]
gi|703090815|ref|XP_010094185.1|1.9e-3658.58hypothetical protein L484_017230 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018619Hyccin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009536 plastid
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001110Cla001110.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018619HyccinPFAMPF09790Hyccincoord: 79..136
score: 7.
NoneNo IPR availablePANTHERPTHR31220FAMILY NOT NAMEDcoord: 44..136
score: 3.7
NoneNo IPR availablePANTHERPTHR31220:SF2SUBFAMILY NOT NAMEDcoord: 44..136
score: 3.7