Cla001091 (gene) Watermelon (97103) v1

Overview
NameCla001091
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionN-carbamoylputrescine amidase (AHRD V1 ***- D3NU88_AZOS1)
LocationChr1 : 13470875 .. 13471234 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCTTCAAGGTGCGGAGATATTGTTTTATCCTACAGCCATTGGTTCTGAACCTCAAGATGAAGGACTTGACTCTTGTGATCACTGGAAACGAGTAATGCAAGGGCATGCGGGTGCTAATGTGGTAAGTTTCTAGACAACGATATAGCTAATTATACATTATATTAGCTGAAGTATTAGTTTCTTTTTCAAGTTATTTGCTTTGTTTGAGGGCCTTGAATGAGTTATCTTTTTTAGGACCCTCCTTGGTCAACTAATGACAATCATTGAACAATTTGAATATTGATTTTTGTTTGTGTAGGTGAAATTTTTGCTTTTAAACGCACTGATTGGTGCTTTTGTTGAATACGATAACTAA

mRNA sequence

ATGGTTCTTCAAGGTGCGGAGATATTGTTTTATCCTACAGCCATTGGTTCTGAACCTCAAGATGAAGGACTTGACTCTTGTGATCACTGGAAACGAGTAATGCAAGGGCATGCGGGTGCTAATGTGGTGAAATTTTTGCTTTTAAACGCACTGATTGGTGCTTTTGTTGAATACGATAACTAA

Coding sequence (CDS)

ATGGTTCTTCAAGGTGCGGAGATATTGTTTTATCCTACAGCCATTGGTTCTGAACCTCAAGATGAAGGACTTGACTCTTGTGATCACTGGAAACGAGTAATGCAAGGGCATGCGGGTGCTAATGTGGTGAAATTTTTGCTTTTAAACGCACTGATTGGTGCTTTTGTTGAATACGATAACTAA

Protein sequence

MVLQGAEILFYPTAIGSEPQDEGLDSCDHWKRVMQGHAGANVVKFLLLNALIGAFVEYDN
Homology
[Close]
BLAST of Cla001091 vs. Swiss-Prot
Match: NILP1_ARATH (N-carbamoylputrescine amidase OS=Arabidopsis thaliana GN=CPA PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.5e-17
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 1 

Query: 1   MVLQGAEILFYPTAIGSEPQDEGLDSCDHWKRVMQGHAGANVVKFLLLNALIGAFVEYDN 60
           MVLQGAEILFYPTAIGSEPQD+GLDS DHW+RVMQGHAGANVV  +  N +    +E ++
Sbjct: 198 MVLQGAEILFYPTAIGSEPQDQGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEH 257

[Close]
BLAST of Cla001091 vs. Swiss-Prot
Match: AGUB_SOLLC (N-carbamoylputrescine amidase OS=Solanum lycopersicum GN=CPA PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.7e-17
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 1 

Query: 1   MVLQGAEILFYPTAIGSEPQDEGLDSCDHWKRVMQGHAGANVVKFLLLNALIGAFVEYDN 60
           M LQGAE+LFYPTAIGSEPQD+GLDS DHW+RVMQGHAGANVV  +  N +    +E ++
Sbjct: 169 MALQGAEVLFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEH 228

[Close]
BLAST of Cla001091 vs. Swiss-Prot
Match: AGUB_SOLTU (N-carbamoylputrescine amidase OS=Solanum tuberosum GN=CPA PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.7e-17
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 1 

Query: 1   MVLQGAEILFYPTAIGSEPQDEGLDSCDHWKRVMQGHAGANVVKFLLLNALIGAFVEYDN 60
           M LQGAE+LFYPTAIGSEPQD+GLDS DHW+RVMQGHAGANVV  +  N +    +E ++
Sbjct: 169 MALQGAEVLFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEH 228

[Close]
BLAST of Cla001091 vs. Swiss-Prot
Match: AGUB_ORYSJ (N-carbamoylputrescine amidase OS=Oryza sativa subsp. japonica GN=CPA PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.8e-16
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 1   MVLQGAEILFYPTAIGSEPQDEGLDSCDHWKRVMQGHAGANVVKFLLLNALIGAFVEYDN 60
           MVLQGAEILFYPTAIGSEPQD  LDS +HWKRVMQGHAGAN+V  +  N +    VE ++
Sbjct: 172 MVLQGAEILFYPTAIGSEPQDNNLDSREHWKRVMQGHAGANLVPLVASNRIGRETVETEH 231

[Close]
BLAST of Cla001091 vs. TrEMBL
Match: W1PSJ6_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00040p00090100 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-17
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 1   MVLQGAEILFYPTAIGSEPQDEGLDSCDHWKRVMQGHAGANVVKFLLLNALIGAFVEYDN 60
           MVLQGAEILFYPTAIGSEPQDEGLDSC+HWKRVMQGHAGANVV  L  N +    +E ++
Sbjct: 167 MVLQGAEILFYPTAIGSEPQDEGLDSCEHWKRVMQGHAGANVVPLLASNRIGKEVIETEH 226

[Close]
BLAST of Cla001091 vs. TrEMBL
Match: A0A061GZP8_THECC (Nitrilase-like protein 1 isoform 1 OS=Theobroma cacao GN=TCM_041385 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.0e-17
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 1   MVLQGAEILFYPTAIGSEPQDEGLDSCDHWKRVMQGHAGANVVKFLLLNALIGAFVEYDN 60
           MVLQGAEILFYPTAIGSEPQDEGLDSCDHW+RVMQGHAGANVV  +  N +    +E ++
Sbjct: 169 MVLQGAEILFYPTAIGSEPQDEGLDSCDHWQRVMQGHAGANVVPLVASNRIGKEMIETEH 228

[Close]
BLAST of Cla001091 vs. TrEMBL
Match: A0A061GU72_THECC (Nitrilase-like protein 1 isoform 2 OS=Theobroma cacao GN=TCM_041385 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.0e-17
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 1   MVLQGAEILFYPTAIGSEPQDEGLDSCDHWKRVMQGHAGANVVKFLLLNALIGAFVEYDN 60
           MVLQGAEILFYPTAIGSEPQDEGLDSCDHW+RVMQGHAGANVV  +  N +    +E ++
Sbjct: 169 MVLQGAEILFYPTAIGSEPQDEGLDSCDHWQRVMQGHAGANVVPLVASNRIGKEMIETEH 228

[Close]
BLAST of Cla001091 vs. TrEMBL
Match: A0A0A0LT48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G166770 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-16
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 1   MVLQGAEILFYPTAIGSEPQDEGLDSCDHWKRVMQGHAGANVVKFLLLNALIGAFVEYDN 60
           MVLQGAEILFYPTAIGSEPQD+GLDSC+HWKRVMQGHAGANVV  +  N +    +E ++
Sbjct: 169 MVLQGAEILFYPTAIGSEPQDQGLDSCNHWKRVMQGHAGANVVPLVASNRIGTEIIETEH 228

[Close]
BLAST of Cla001091 vs. TrEMBL
Match: E7AIL9_PLAMJ (N-carbamoylputrescine amidohydrolase (Fragment) OS=Plantago major GN=cpa1 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.5e-16
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 1   MVLQGAEILFYPTAIGSEPQDEGLDSCDHWKRVMQGHAGANVVKFLLLNALIGAFVEYDN 60
           MVLQGAEILFYPTAIGSEPQD+GLDS DHWKRVMQGHAGANVV  +  N +    +E ++
Sbjct: 128 MVLQGAEILFYPTAIGSEPQDQGLDSRDHWKRVMQGHAGANVVPLVASNRIGKEIIETEH 187

[Close]
BLAST of Cla001091 vs. TAIR10
Match: AT2G27450.2 (AT2G27450.2 nitrilase-like protein 1)

HSP 1 Score: 89.4 bits (220), Expect = 8.4e-19
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 1 

Query: 1   MVLQGAEILFYPTAIGSEPQDEGLDSCDHWKRVMQGHAGANVVKFLLLNALIGAFVEYDN 60
           MVLQGAEILFYPTAIGSEPQD+GLDS DHW+RVMQGHAGANVV  +  N +    +E ++
Sbjct: 198 MVLQGAEILFYPTAIGSEPQDQGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEH 257

[Close]
BLAST of Cla001091 vs. NCBI nr
Match: gi|586749738|ref|XP_006851426.1| (PREDICTED: N-carbamoylputrescine amidase [Amborella trichopoda])

HSP 1 Score: 95.5 bits (236), Expect = 3.3e-17
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 1   MVLQGAEILFYPTAIGSEPQDEGLDSCDHWKRVMQGHAGANVVKFLLLNALIGAFVEYDN 60
           MVLQGAEILFYPTAIGSEPQDEGLDSC+HWKRVMQGHAGANVV  L  N +    +E ++
Sbjct: 167 MVLQGAEILFYPTAIGSEPQDEGLDSCEHWKRVMQGHAGANVVPLLASNRIGKEVIETEH 226

[Close]
BLAST of Cla001091 vs. NCBI nr
Match: gi|659071642|ref|XP_008461184.1| (PREDICTED: N-carbamoylputrescine amidase [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 4.4e-17
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 1 

Query: 1   MVLQGAEILFYPTAIGSEPQDEGLDSCDHWKRVMQGHAGANVVKF 46
           MVLQGAEILFYPTAIGSEPQD+GLDSCDHWKRVMQGHAGANVV F
Sbjct: 169 MVLQGAEILFYPTAIGSEPQDQGLDSCDHWKRVMQGHAGANVVSF 213

[Close]
BLAST of Cla001091 vs. NCBI nr
Match: gi|590586755|ref|XP_007015791.1| (Nitrilase-like protein 1 isoform 2 [Theobroma cacao])

HSP 1 Score: 94.7 bits (234), Expect = 5.7e-17
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 1   MVLQGAEILFYPTAIGSEPQDEGLDSCDHWKRVMQGHAGANVVKFLLLNALIGAFVEYDN 60
           MVLQGAEILFYPTAIGSEPQDEGLDSCDHW+RVMQGHAGANVV  +  N +    +E ++
Sbjct: 169 MVLQGAEILFYPTAIGSEPQDEGLDSCDHWQRVMQGHAGANVVPLVASNRIGKEMIETEH 228

[Close]
BLAST of Cla001091 vs. NCBI nr
Match: gi|590586752|ref|XP_007015790.1| (Nitrilase-like protein 1 isoform 1 [Theobroma cacao])

HSP 1 Score: 94.7 bits (234), Expect = 5.7e-17
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 1   MVLQGAEILFYPTAIGSEPQDEGLDSCDHWKRVMQGHAGANVVKFLLLNALIGAFVEYDN 60
           MVLQGAEILFYPTAIGSEPQDEGLDSCDHW+RVMQGHAGANVV  +  N +    +E ++
Sbjct: 169 MVLQGAEILFYPTAIGSEPQDEGLDSCDHWQRVMQGHAGANVVPLVASNRIGKEMIETEH 228

[Close]
BLAST of Cla001091 vs. NCBI nr
Match: gi|1009113287|ref|XP_015872695.1| (PREDICTED: N-carbamoylputrescine amidase [Ziziphus jujuba])

HSP 1 Score: 94.4 bits (233), Expect = 7.4e-17
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 1   MVLQGAEILFYPTAIGSEPQDEGLDSCDHWKRVMQGHAGANVVKFLLLNALIGAFVEYDN 60
           MVLQGAEILFYPTAIGSEPQD+GLDSCDHW+RVMQGHAGANVV  +  N +    +E ++
Sbjct: 169 MVLQGAEILFYPTAIGSEPQDDGLDSCDHWRRVMQGHAGANVVPLVASNRIGKEIIEMEH 228

The following BLAST results are available for this feature:
BLAST of Cla001091 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NILP1_ARATH1.5e-1770.00N-carbamoylputrescine amidase OS=Arabidopsis thaliana GN=CPA PE=1 SV=1[more]
AGUB_SOLLC5.7e-1766.67N-carbamoylputrescine amidase OS=Solanum lycopersicum GN=CPA PE=2 SV=1[more]
AGUB_SOLTU5.7e-1766.67N-carbamoylputrescine amidase OS=Solanum tuberosum GN=CPA PE=2 SV=1[more]
AGUB_ORYSJ4.8e-1668.33N-carbamoylputrescine amidase OS=Oryza sativa subsp. japonica GN=CPA PE=2 SV=1[more]
BLAST of Cla001091 vs. TrEMBL
Match NameE-valueIdentityDescription
W1PSJ6_AMBTC2.3e-1775.00Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00040p00090100 PE=4 SV=... [more]
A0A061GZP8_THECC4.0e-1773.33Nitrilase-like protein 1 isoform 1 OS=Theobroma cacao GN=TCM_041385 PE=4 SV=1[more]
A0A061GU72_THECC4.0e-1773.33Nitrilase-like protein 1 isoform 2 OS=Theobroma cacao GN=TCM_041385 PE=4 SV=1[more]
A0A0A0LT48_CUCSA1.2e-1671.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G166770 PE=4 SV=1[more]
E7AIL9_PLAMJ7.5e-1671.67N-carbamoylputrescine amidohydrolase (Fragment) OS=Plantago major GN=cpa1 PE=2 S... [more]
BLAST of Cla001091 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G27450.28.4e-1970.00 nitrilase-like protein 1[more]
BLAST of Cla001091 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|586749738|ref|XP_006851426.1|3.3e-1775.00PREDICTED: N-carbamoylputrescine amidase [Amborella trichopoda][more]
gi|659071642|ref|XP_008461184.1|4.4e-1795.56PREDICTED: N-carbamoylputrescine amidase [Cucumis melo][more]
gi|590586755|ref|XP_007015791.1|5.7e-1773.33Nitrilase-like protein 1 isoform 2 [Theobroma cacao][more]
gi|590586752|ref|XP_007015790.1|5.7e-1773.33Nitrilase-like protein 1 isoform 1 [Theobroma cacao][more]
gi|1009113287|ref|XP_015872695.1|7.4e-1771.67PREDICTED: N-carbamoylputrescine amidase [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003010C-N_Hydrolase
Vocabulary: Molecular Function
TermDefinition
GO:0016810hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
Vocabulary: Biological Process
TermDefinition
GO:0006807nitrogen compound metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006525 arginine metabolic process
biological_process GO:0006560 proline metabolic process
biological_process GO:0009446 putrescine biosynthetic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0033388 putrescine biosynthetic process from arginine
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0050126 N-carbamoylputrescine amidase activity
molecular_function GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001091Cla001091.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003010Carbon-nitrogen hydrolaseGENE3DG3DSA:3.60.110.10coord: 1..49
score: 1.
IPR003010Carbon-nitrogen hydrolaseunknownSSF56317Carbon-nitrogen hydrolasecoord: 1..50
score: 2.4
NoneNo IPR availablePANTHERPTHR23088NITRILASE-RELATEDcoord: 1..43
score: 1.2
NoneNo IPR availablePANTHERPTHR23088:SF26N-CARBAMOYLPUTRESCINE AMIDASEcoord: 1..43
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla001091Lsi03G001240Bottle gourd (USVL1VR-Ls)lsiwmB265
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001091Cucurbita maxima (Rimu)cmawmB383
Cla001091Cucurbita maxima (Rimu)cmawmB571
Cla001091Cucurbita moschata (Rifu)cmowmB382
Cla001091Cucurbita moschata (Rifu)cmowmB566
Cla001091Watermelon (Charleston Gray)wcgwmB149
Cla001091Cucurbita pepo (Zucchini)cpewmB045
Cla001091Cucumber (Gy14) v2cgybwmB060
Cla001091Silver-seed gourdcarwmB0000
Cla001091Watermelon (97103) v2wmwmbB243
Cla001091Wax gourdwgowmB506