Cla001069 (gene) Watermelon (97103) v1

NameCla001069
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRetrotransposon protein (AHRD V1 ***- E5GCB5_CUCME)
LocationChr1 : 15970311 .. 15970922 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCCAAGTGCAAAAGGACTGCGCCATAAGTCATTTCCATACTATGATTTCTTGGCTATCGTATTTGGCAAAGACAGAGCCACATGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGGAAAACAAGGACATCCTGAACAACCAGTCCCCAGACTTTGAGAACTTCTATATTCTTGATCCACCTTTTGCTAGCTCGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTAGAGGGAGAGGGTCTGGGAGTAGCTTGCCATCAAGGAGTAGGAAGTCCCAAAGTTCATCGATTGGAGAGTACAGCGAGATGGTTTGTGAGGGATTCCAACTTCTGACGAAGTTTATTGACGGCATTGCACAGTGGCCTGTTATGAACGAGGACCTGGCAAGGCGTCGTCATCGAAAACTATACGCTGAGCTGCAATCCATTCCTGGTCTGTCGGTACAGGATGGATTGACTGTTGCACGATCATTGCTTGCAGATCCAATGCTGTTAAGCCACTTTGTGGACTTTCCACCACAGTGGAAGTACGACTATTGCATGCAAGTCCTCGGGCGACAACGGGATCCAGCACCATGA

mRNA sequence

CATCCAAGTGCAAAAGGACTGCGCCATAAGTCATTTCCATACTATGATTTCTTGGCTATCGTATTTGGCAAAGACAGAGCCACATGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGGAAAACAAGGACATCCTGAACAACCAGTCCCCAGACTTTGAGAACTTCTATATTCTTGATCCACCTTTTGCTAGCTCGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTAGAGGGAGAGGGTCTGGGAGTAGCTTGCCATCAAGGAGTAGGAAGTCCCAAAGTTCATCGATTGGAGAGTACAGCGAGATGGTTTGTGAGGGATTCCAACTTCTGACGAAGTTTATTGACGGCATTGCACAGTGGCCTGTTATGAACGAGGACCTGGCAAGGCGTCGTCATCGAAAACTATACGCTGAGCTGCAATCCATTCCTGGTCTGTCGGTACAGGATGGATTGACTGTTGCACGATCATTGCTTGCAGATCCAATGCTGTTAAGCCACTTTGTGGACTTTCCACCACAGTGGAAGTACGACTATTGCATGCAAGTCCTCGGGCGACAACGGGATCCAGCACCATGA

Coding sequence (CDS)

CATCCAAGTGCAAAAGGACTGCGCCATAAGTCATTTCCATACTATGATTTCTTGGCTATCGTATTTGGCAAAGACAGAGCCACATGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGGAAAACAAGGACATCCTGAACAACCAGTCCCCAGACTTTGAGAACTTCTATATTCTTGATCCACCTTTTGCTAGCTCGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTAGAGGGAGAGGGTCTGGGAGTAGCTTGCCATCAAGGAGTAGGAAGTCCCAAAGTTCATCGATTGGAGAGTACAGCGAGATGGTTTGTGAGGGATTCCAACTTCTGACGAAGTTTATTGACGGCATTGCACAGTGGCCTGTTATGAACGAGGACCTGGCAAGGCGTCGTCATCGAAAACTATACGCTGAGCTGCAATCCATTCCTGGTCTGTCGGTACAGGATGGATTGACTGTTGCACGATCATTGCTTGCAGATCCAATGCTGTTAAGCCACTTTGTGGACTTTCCACCACAGTGGAAGTACGACTATTGCATGCAAGTCCTCGGGCGACAACGGGATCCAGCACCATGA

Protein sequence

HPSAKGLRHKSFPYYDFLAIVFGKDRATWSHATTTAEVGSEPVMEEENKDILNNQSPDFENFYILDPPFASSPXXXXXXXXXXXXXGRGRGSGSSLPSRSRKSQSSSIGEYSEMVCEGFQLLTKFIDGIAQWPVMNEDLARRRHRKLYAELQSIPGLSVQDGLTVARSLLADPMLLSHFVDFPPQWKYDYCMQVLGRQRDPAP
BLAST of Cla001069 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.0e-13
Identity = 58/197 (29.44%), Postives = 94/197 (47.72%), Query Frame = 1

Query: 1   HPSAKGLRHKSFPYYDFLAIVFGKDRATWSHATTTAEVGSE--PVMEEENKDILNNQSPD 60
           HP+AKGL +KSF +YD L+ VFGKDRAT   A + A++GS   P  +    D +    PD
Sbjct: 467 HPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAM----PD 526

Query: 61  FENFYILDPPFASSPXXXXXXXXXXXXXGRGRGSGSSLPSRSRKSQSSSIGEYSEMVCEG 120
            +   +  P    SP              R   SGS    R R   ++  G   ++V   
Sbjct: 527 TDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGS---KRKRPGHATDSG---DIVRTA 586

Query: 121 FQLLTKFIDGIAQWPVMNEDLARRRHRKLYAELQSIPGLSVQDGLTVARSLLADPMLLSH 180
            +   + +  IA+WP++    A +  +++   L++IP L++ D   + R L+ +   +  
Sbjct: 587 IEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKA 646

Query: 181 FVDFPPQWKYDYCMQVL 196
           F++ P   KY YC  +L
Sbjct: 647 FLEVPDHMKYPYCSLIL 653

BLAST of Cla001069 vs. TrEMBL
Match: A0A0A0M0S6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665930 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-08
Identity = 56/183 (30.60%), Postives = 77/183 (42.08%), Query Frame = 1

Query: 1   HPSAKGLRHKSFPYYDFLAIVFGKDRATWSHATTTAEVGSEPVMEEENKDILNNQSPDFE 60
           H +A+GL +KSF Y+  L IV G+DR       T  E+  +   + E  DI  N     E
Sbjct: 90  HHNARGLLNKSFSYFYDLQIVIGRDRTIGDRCKTPVEMDPQTTKDIEKDDIGIN----LE 149

Query: 61  NFYILDPPFASSPXXXXXXXXXXXXXGRGRGSGSSLPSRSRKSQSSSIGEYSEMVCEGFQ 120
           +F I  P     P                R   S   SR R+S       YS   C   +
Sbjct: 150 DFDIPKPHGLELPSVKNMSSTPTSMILDAR---SYRQSRKRRS-------YSCTFCASMR 209

Query: 121 LLTKFIDGIAQWPVMNEDLARRRHRKLYAELQSIPGLSVQDGLTVARSLLADPMLLSHFV 180
              K I  I         +    H++LY ELQ+I G+ V + L V  SLL +P +L  F+
Sbjct: 210 ETFKEIGKIVAMEERKMKIESSLHKQLYVELQTIHGMDVDNCLIVVESLLPNPTMLHTFL 258

Query: 181 DFP 184
           D+P
Sbjct: 270 DYP 258

BLAST of Cla001069 vs. TrEMBL
Match: A0A0J8FY72_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g005680 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.6e-07
Identity = 54/198 (27.27%), Postives = 88/198 (44.44%), Query Frame = 1

Query: 1   HPSAKGLRHKSFPYYDFLAIVFGKDRATWSHATTTAEVGSEPVMEEENKDILNNQSPDFE 60
           H +A GLR+K FP+Y+ L  ++GKDRA  + + T  +V  E  ME+  +    +Q PD  
Sbjct: 122 HKNAAGLRNKPFPFYEELGKIWGKDRAIGNESGTVYDVLQE--MEDVTRVGEEHQVPD-- 181

Query: 61  NFYILDPPFASSPXXXXXXXXXXXXXGRGRGSGSSLPSRSRKSQSSSIGEYSE---MVCE 120
               L+   ++SP              +     SS   R R     ++ E+S     + E
Sbjct: 182 ----LNAEESNSPTQCDPMGPSSSTP-QSTTPSSSRTKRVRTETIEALKEFSTKIGKISE 241

Query: 121 GFQLLTKFIDGIAQWPVMNEDLARRRHRKLYAELQSIPGLSVQDGLTVARSLLADPMLLS 180
             +  T+ I  +A       D A RR  KL  E+  + GLS  + L  ++ +  +P+ + 
Sbjct: 242 VMEAATEHIGRLANCFQHESDSADRR-MKLTTEIMKMEGLSPSEVLLASKKIALNPLEVD 301

Query: 181 HFVDFPPQWKYDYCMQVL 196
            F   P  +KY Y   +L
Sbjct: 302 FFFSLPDNFKYAYVQGLL 309

BLAST of Cla001069 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-06
Identity = 56/196 (28.57%), Postives = 83/196 (42.35%), Query Frame = 1

Query: 2   PSAKGLRHKSFPYYDFLAIVFGKDRATWSHATTTAEVGSEPVMEEENKDILNNQSPDFEN 61
           P+AKGL +  FPYYD L  VFG+DRAT   A T A+VGS       ++  + + + DF  
Sbjct: 433 PAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF-- 492

Query: 62  FYILDPPFASSPXXXXXXXXXXXXXGRGRGSGSSLPSRSRKSQSSSIGEYSEMVCEGFQL 121
                PP  S                R    G +  S S++ + S      E +      
Sbjct: 493 -----PPVYSRGVDILQDDVRASRPSRA-SEGKTGSSGSKRKRGSQRDFDVEAIHLALDQ 552

Query: 122 LTKFIDGIAQWPVMNEDLARRRH--RKLYAELQSIPGLSVQDGLTVARSLLADPMLLSHF 181
             + +  IA+WP  N  LA   H   + +  L+ +P L+  D   + R LL+    L  F
Sbjct: 553 TNEQLRQIAEWPARN--LANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 612

Query: 182 VDFPPQWKYDYCMQVL 196
           V  P   +  +C  +L
Sbjct: 613 VLMPEDEREGFCRVLL 618

BLAST of Cla001069 vs. TrEMBL
Match: A0A0J8BIR4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g018220 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 53/198 (26.77%), Postives = 88/198 (44.44%), Query Frame = 1

Query: 1   HPSAKGLRHKSFPYYDFLAIVFGKDRATWSHATTTAEVGSEPVMEEENKDILNNQSPDFE 60
           H +A GLR+K FP+Y+ L  ++GKDRA  + + T  +V  E  ME   +    +Q PD  
Sbjct: 122 HKNAAGLRNKPFPFYEELGKIWGKDRAVGNESGTVYDVLQE--MEHGARVEEEHQVPD-- 181

Query: 61  NFYILDPPFASSPXXXXXXXXXXXXXGRGRGSGSSLPSRSRKSQSSSIGEYSE---MVCE 120
               L+   ++SP              +     SS   R+R     ++ E+S     + +
Sbjct: 182 ----LNAEESNSPTQCDPTGPPSSTP-QSTTPSSSRTKRARTETIEALKEFSTKIGKISD 241

Query: 121 GFQLLTKFIDGIAQWPVMNEDLARRRHRKLYAELQSIPGLSVQDGLTVARSLLADPMLLS 180
             +  T+ I  +A       D A RR  KL  E+  + GLS  + L  ++ +  +P+ + 
Sbjct: 242 VMEAATEHIGRLANCFQHESDSADRR-MKLTTEIMKMEGLSPSEVLLASKKIALNPLEVD 301

Query: 181 HFVDFPPQWKYDYCMQVL 196
            F   P  +KY Y   +L
Sbjct: 302 FFFSLPENFKYAYVQGLL 309

BLAST of Cla001069 vs. NCBI nr
Match: gi|659071532|ref|XP_008460440.1| (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 8.4e-20
Identity = 70/192 (36.46%), Postives = 102/192 (53.12%), Query Frame = 1

Query: 1   HPSAKGLRHKSFPYYDFLAIVFGKDRATWSHATTTAEVGSEPVMEEENKDI-LNNQSPDF 60
           HP+A+GL +KSFPY+  L I+FG+DRAT     T  E+G +   + E  D+ +N +  D 
Sbjct: 31  HPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKTPIEMGLQIARDTEEDDMDINLEDFDI 90

Query: 61  ENFYILDPP----FASSPXXXXXXXXXXXXXGRGRGSGSSLPSRSRKSQSSSIGEYSEMV 120
            N + L+PP     +S+P                   GSS PS+ R+S       YSE +
Sbjct: 91  PNPHGLEPPSGEDMSSTPT------------SMAHDVGSSKPSKKRRS-------YSEDL 150

Query: 121 CEGFQL----LTKFIDGIAQWPVMNEDLARRRHRKLYAELQSIPGLSVQDGLTVARSLLA 180
            + F+      +K I  IA W     ++    H++LYAELQ+IPG+ V D L V  SLL 
Sbjct: 151 MDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQTIPGMDVDDCLIVVESLLP 203

Query: 181 DPMLLSHFVDFP 184
           DP++L  F+D+P
Sbjct: 211 DPIMLHTFLDYP 203

BLAST of Cla001069 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 83.2 bits (204), Expect = 5.8e-13
Identity = 58/197 (29.44%), Postives = 94/197 (47.72%), Query Frame = 1

Query: 1   HPSAKGLRHKSFPYYDFLAIVFGKDRATWSHATTTAEVGSE--PVMEEENKDILNNQSPD 60
           HP+AKGL +KSF +YD L+ VFGKDRAT   A + A++GS   P  +    D +    PD
Sbjct: 467 HPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAM----PD 526

Query: 61  FENFYILDPPFASSPXXXXXXXXXXXXXGRGRGSGSSLPSRSRKSQSSSIGEYSEMVCEG 120
            +   +  P    SP              R   SGS    R R   ++  G   ++V   
Sbjct: 527 TDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGS---KRKRPGHATDSG---DIVRTA 586

Query: 121 FQLLTKFIDGIAQWPVMNEDLARRRHRKLYAELQSIPGLSVQDGLTVARSLLADPMLLSH 180
            +   + +  IA+WP++    A +  +++   L++IP L++ D   + R L+ +   +  
Sbjct: 587 IEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKA 646

Query: 181 FVDFPPQWKYDYCMQVL 196
           F++ P   KY YC  +L
Sbjct: 647 FLEVPDHMKYPYCSLIL 653

BLAST of Cla001069 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 4.2e-11
Identity = 54/191 (28.27%), Postives = 81/191 (42.41%), Query Frame = 1

Query: 1   HPSAKGLRHKSFPYYDFLAIVFGKDRATWSHATTTAEVGSEPVMEEENKDILNNQSPDFE 60
           HP+AKGL HKSFPYYD L+ VFGKDRAT + + T   VGS       N   + N +    
Sbjct: 115 HPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGS-------NVSNMFNDTIPLG 174

Query: 61  NFYILDPPFASSPXXXXXXXXXXXXXGRGRGSGSSLPSRSRKSQSSSIGEYSEMVCEGFQ 120
           + +  D P   S                      +  S S++ + S   E  E++    +
Sbjct: 175 DSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVME 234

Query: 121 LLTKFIDGIAQWPVMNEDLARRRHRKLYAELQSIPGLSVQDGLTVARSLLADPMLLSHFV 180
              + +  IA WP     +      ++  +LQ IP L  QD   + + L      +  F+
Sbjct: 235 FGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFL 294

Query: 181 DFPPQWKYDYC 192
             P + K +YC
Sbjct: 295 SIPTELKLEYC 298

BLAST of Cla001069 vs. NCBI nr
Match: gi|659113923|ref|XP_008456820.1| (PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 2.7e-10
Identity = 59/203 (29.06%), Postives = 84/203 (41.38%), Query Frame = 1

Query: 1   HPSAKGLRHKSFPYYDFLAIVFGKDRATWSHATTTAEVGSE---------PVMEEENKDI 60
           HP+AKGL HKSFPYYD L+ VFG D AT +H+ T A+ GS          P+ +  N+DI
Sbjct: 72  HPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDI 131

Query: 61  LNNQSPDFENFYILDPPFASSPXXXXXXXXXXXXXGRGRGSGS---SLPSRSRKSQSSSI 120
           L   S        LD  F                 G   G  S   +  S S++ + S  
Sbjct: 132 LTIYSQGVH--MSLDEIF-----------------GIRAGQASERRNYSSGSKRKRGSKH 191

Query: 121 GEYSEMVCEGFQLLTKFIDGIAQWPVMNEDLARRRHRKLYAELQSIPGLSVQDGLTVARS 180
            E  E++    +     +  I  WP            ++  +LQ IP L  QD   + + 
Sbjct: 192 YEMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQI 251

Query: 181 LLADPMLLSHFVDFPPQWKYDYC 192
           L      +  F+  P + K +YC
Sbjct: 252 LFRSVEAIEGFLSIPTKLKLEYC 255

BLAST of Cla001069 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 54/199 (27.14%), Postives = 91/199 (45.73%), Query Frame = 1

Query: 1   HPSAKGLRHKSFPYYDFLAIVFGKDRATWSHATTTAEVGSEPVMEEENKDILNNQSPDFE 60
           HP+AKGL +KSFP+YD L+ VF KD AT   A + A+VGS      +          DF+
Sbjct: 61  HPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDTDFQ 120

Query: 61  NFYILDPPFASSPXXXXXXXXXXXXXGRGRGSGSSLPSRSRKSQSSSIGEYSEMVCEGFQ 120
             Y        SP             GR   SG      S++ +  S  +  +++    +
Sbjct: 121 PMY--SRGLNMSPDELMGTRTARVSEGRYVSSG------SKQKRGGSTIDSGDILRTAIE 180

Query: 121 LLTKFIDGIAQWPVMNEDLARRRHRKLYAELQSIPGLSVQDGLTVARSLLADPMLLSHFV 180
              + ++ IA+W V+    A +  +++  +L++IP L++ D   + R L+ +   +  F+
Sbjct: 181 YGNEQLNRIAEWHVLQRQDATQTRQEVVRQLEAIPELTLMDRCRLMRILIHNVNDMKAFL 240

Query: 181 DFPPQWKYDYCMQVLGRQR 200
           + P   K  YC  +L   R
Sbjct: 241 EVPDNMK-PYCSIILEENR 250

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GCB5_CUCME4.0e-1329.44Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0M0S6_CUCSA3.0e-0830.60Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665930 PE=4 SV=1[more]
A0A0J8FY72_BETVU9.6e-0727.27Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g005680 PE=4 S... [more]
E5GBB2_CUCME1.3e-0628.57Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0J8BIR4_BETVU1.6e-0626.77Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g018220 PE=4 S... [more]
Match NameE-valueIdentityDescription
gi|659071532|ref|XP_008460440.1|8.4e-2036.46PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo][more]
gi|307136287|gb|ADN34114.1|5.8e-1329.44retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659082641|ref|XP_008441954.1|4.2e-1128.27PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|659113923|ref|XP_008456820.1|2.7e-1029.06PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo][more]
gi|659123900|ref|XP_008461893.1|1.0e-0927.14PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001069Cla001069.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None