Cla001063 (gene) Watermelon (97103) v1

NameCla001063
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGypsy-like retrotransposase (AHRD V1 *-*- B0F6T3_CUCSA)
LocationChr1 : 15704365 .. 15704805 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGAGACATTAAAATTTTGAAAGAGAGTTTCACTACACCACTTACCAAGATGGATAAGAGTGGCGTTAAAAAAACTGAGACAGAGGAAGCTAGAGCAACTCTGCTAGAAAAACGAACAAAGGATGGTTTCGATCCAAAGGCATATAAGCTACTGGCAAAGGCAGGTTATGACTTCACTACTCATTTCGATCCAAAGGCATATAAGCTACTGGCAAAGGCAGGTTATGACTTCACTACTCATTTCGATCCAAAGGCATATAAGCTACTGGCAAAGGCAGGTTATGATTTCACGACTCATACTGAGTTTAAAACTCTAAAGATATCTGATGAAAGACCTAAACTTTCCCCTACTCAAAGGAAGCTTCAGAAAGAAGGATATACTATCCCTTATTCAAGGGCCAGACTTGCATATAATCCCCGGAGCCGATTCATATAA

mRNA sequence

ATGATCGGAGACATTAAAATTTTGAAAGAGAGTTTCACTACACCACTTACCAAGATGGATAAGAGTGGCGTTAAAAAAACTGAGACAGAGGAAGCTAGAGCAACTCTGCTAGAAAAACGAACAAAGGATGGTTTCGATCCAAAGGCATATAAGCTACTGGCAAAGGCAGGTTATGACTTCACTACTCATTTCGATCCAAAGGCATATAAGCTACTGGCAAAGGCAGGTTATGACTTCACTACTCATTTCGATCCAAAGGCATATAAGCTACTGGCAAAGGCAGGTTATGATTTCACGACTCATACTGAGTTTAAAACTCTAAAGATATCTGATGAAAGACCTAAACTTTCCCCTACTCAAAGGAAGCTTCAGAAAGAAGGATATACTATCCCTTATTCAAGGGCCAGACTTGCATATAATCCCCGGAGCCGATTCATATAA

Coding sequence (CDS)

ATGATCGGAGACATTAAAATTTTGAAAGAGAGTTTCACTACACCACTTACCAAGATGGATAAGAGTGGCGTTAAAAAAACTGAGACAGAGGAAGCTAGAGCAACTCTGCTAGAAAAACGAACAAAGGATGGTTTCGATCCAAAGGCATATAAGCTACTGGCAAAGGCAGGTTATGACTTCACTACTCATTTCGATCCAAAGGCATATAAGCTACTGGCAAAGGCAGGTTATGACTTCACTACTCATTTCGATCCAAAGGCATATAAGCTACTGGCAAAGGCAGGTTATGATTTCACGACTCATACTGAGTTTAAAACTCTAAAGATATCTGATGAAAGACCTAAACTTTCCCCTACTCAAAGGAAGCTTCAGAAAGAAGGATATACTATCCCTTATTCAAGGGCCAGACTTGCATATAATCCCCGGAGCCGATTCATATAA

Protein sequence

MIGDIKILKESFTTPLTKMDKSGVKKTETEEARATLLEKRTKDGFDPKAYKLLAKAGYDFTTHFDPKAYKLLAKAGYDFTTHFDPKAYKLLAKAGYDFTTHTEFKTLKISDERPKLSPTQRKLQKEGYTIPYSRARLAYNPRSRFI
BLAST of Cla001063 vs. TrEMBL
Match: B0F6T3_CUCSA (Gypsy-like retrotransposase OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 1

Query: 2  IGDIKILKESFTTPLTKMDKSGVKKTETEEARATLLEKRTKDGFDPKAYKLLAKAG 58
          +GDIK+LKESFTTPLTK+ K  +K    EE    L ++R KD FD KA KL+AKAG
Sbjct: 38 VGDIKVLKESFTTPLTKIMKQEIKIDLMEE---NLPQRRMKDKFDSKACKLMAKAG 90

BLAST of Cla001063 vs. NCBI nr
Match: gi|778660504|ref|XP_011656345.1| (PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-18
Identity = 65/138 (47.10%), Postives = 79/138 (57.25%), Query Frame = 1

Query: 2   IGDIKILKESFTTPLTKMDKSGVKKTETEEARATLLEKRTKDGFDPKAYKLLAKAGYDFT 61
           +GDI+I+KESFTTPLTK+ K  VK    E   A L ++RTKDGFDPK             
Sbjct: 456 VGDIEIIKESFTTPLTKIAKQEVKVDLVE---ANLPQRRTKDGFDPK------------- 515

Query: 62  THFDPKAYKLLAKAGYDFTTHFDPKAYKLLAKAGYDFTTHTEFKTLKISDERPKLSPTQR 121
                 AY                   KL+AKAGYDFT HTEFK+L+I D RP+LS TQ+
Sbjct: 516 ------AY-------------------KLMAKAGYDFTAHTEFKSLEIHD-RPELSSTQK 551

Query: 122 KLQKEGYTIPYSRARLAY 140
           KL +EG++IP SR  L Y
Sbjct: 576 KLLREGHSIPVSRKGLGY 551

BLAST of Cla001063 vs. NCBI nr
Match: gi|659124357|ref|XP_008462116.1| (PREDICTED: uncharacterized protein LOC103500544 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 4.0e-16
Identity = 42/57 (73.68%), Postives = 51/57 (89.47%), Query Frame = 1

Query: 83  FDPKAYKLLAKAGYDFTTHTEFKTLKISDERPKLSPTQRKLQKEGYTIPYSRARLAY 140
           FDPKAYKL+AKAGYDFTT TE K++KI DERP+LSPTQ+KLQK+GY+IP S+A + Y
Sbjct: 534 FDPKAYKLMAKAGYDFTTRTELKSVKIFDERPELSPTQKKLQKQGYSIPNSKAGIGY 590

BLAST of Cla001063 vs. NCBI nr
Match: gi|659124357|ref|XP_008462116.1| (PREDICTED: uncharacterized protein LOC103500544 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 2.4e-13
Identity = 50/115 (43.48%), Postives = 63/115 (54.78%), Query Frame = 1

Query: 25  KKTETEEARATLLEKRTKDGFDPKAYKLLAKAGYDFTTHFDPKAYKLLAKAGYDFTTHFD 84
           +K E  +  A L E+RT +GFDPK                   AY               
Sbjct: 514 EKIEKNDLEAYLPERRTVEGFDPK-------------------AY--------------- 573

Query: 85  PKAYKLLAKAGYDFTTHTEFKTLKISDERPKLSPTQRKLQKEGYTIPYSRARLAY 140
               KL+AKAGYDFTT TE K++KI DERP+LSPTQ+KLQK+GY+IP S+A + Y
Sbjct: 574 ----KLMAKAGYDFTTRTELKSVKIFDERPELSPTQKKLQKQGYSIPNSKAGIGY 590


HSP 2 Score: 91.3 bits (225), Expect = 1.5e-15
Identity = 42/66 (63.64%), Postives = 57/66 (86.36%), Query Frame = 1

Query: 2   IGDIKILKESFTTPLTKMDKSGVKKTETEEARATLLEKRTKDGFDPKAYKLLAKAGYDFT 61
           +GDI++L+ESFTTPLTK+ K   ++T+T++  A+L ++RTKDGFDPKAYKL+AKAGYDFT
Sbjct: 224 VGDIEVLRESFTTPLTKITK---QETKTDQTEASLPQRRTKDGFDPKAYKLMAKAGYDFT 283

Query: 62  THFDPK 68
           TH + K
Sbjct: 284 THIEFK 286

BLAST of Cla001063 vs. NCBI nr
Match: gi|659113191|ref|XP_008456446.1| (PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 4.6e-12
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 1

Query: 2   IGDIKILKESFTTPLTKMDKSGVKKTETEEARATLLEKRTKDGFDPKAYKLLAKAGYDFT 61
           +GDI++L+ESFTTPLTK+ K   ++T+T++  A+L ++RTKDGFDPK             
Sbjct: 224 VGDIEVLRESFTTPLTKITK---QETKTDQTEASLPQRRTKDGFDPK------------- 283

Query: 62  THFDPKAYKLLAKAGYDFTTHFDPK 87
                 AYKL+AKAGYDFTTH + K
Sbjct: 284 ------AYKLMAKAGYDFTTHIEFK 286


HSP 2 Score: 49.7 bits (117), Expect = 5.1e-03
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 1

Query: 83  FDPKAYKLLAKAGYDFTTHTEFK 106
           FDPKAYKL+AKAGYDFTTH EFK
Sbjct: 264 FDPKAYKLMAKAGYDFTTHIEFK 286


HSP 3 Score: 80.5 bits (197), Expect = 2.7e-12
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = 1

Query: 2   IGDIKILKESFTTPLTKMDKSGVKKTETEEARATLLEKRTKDGFDPKAYKLLAKAGYDFT 61
           + + +ILKE+FT PLTK++K   KK E ++  A L E+RT +GFDPKAYKL+AKAGYDFT
Sbjct: 72  VKNTEILKENFTAPLTKIEKGEAKKIEKKDLEAYLPERRTVEGFDPKAYKLMAKAGYDFT 131

Query: 62  THFDPKA 69
           T  + K+
Sbjct: 132 TRTELKS 138

BLAST of Cla001063 vs. NCBI nr
Match: gi|659099164|ref|XP_008450461.1| (PREDICTED: uncharacterized protein LOC103492056 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 8.1e-09
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 1

Query: 2   IGDIKILKESFTTPLTKMDKSGVKKTETEEARATLLEKRTKDGFDPKAYKLLAKAGYDFT 61
           + + +ILKE+FT PLTK++K   KK E ++  A L E+RT +GFDPK             
Sbjct: 72  VKNTEILKENFTAPLTKIEKGEAKKIEKKDLEAYLPERRTVEGFDPK------------- 131

Query: 62  THFDPKAYKLLAKAGYDFTTHFDPKA 88
                 AYKL+AKAGYDFTT  + K+
Sbjct: 132 ------AYKLMAKAGYDFTTRTELKS 138


HSP 2 Score: 52.0 bits (123), Expect = 1.0e-03
Identity = 35/105 (33.33%), Postives = 48/105 (45.71%), Query Frame = 1

Query: 2   IGDIKILKESFTTPLTKMDKSGVKKTETEEARATLLEKRTKDGFDPKAYKLLAKAGYDFT 61
           + + +ILKE+FT PLTK           E+  A  +EK+  + + P+   +         
Sbjct: 72  VKNTEILKENFTAPLTK----------IEKGEAKKIEKKDLEAYLPERRTVEG------- 131

Query: 62  THFDPKAYKLLAKAGYDFTTHFDPKAYKLLAKAGYDFTTHTEFKT 107
                                FDPKAYKL+AKAGYDFTT TE K+
Sbjct: 132 ---------------------FDPKAYKLMAKAGYDFTTRTELKS 138


HSP 3 Score: 76.3 bits (186), Expect = 5.1e-11
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 1

Query: 1   MIGDIKILKESFTTPLTKMDKSGVKKTETEEARATLLEKRTKDGFDPKAYKLLAKAGYDF 60
           MIG I+IL+ESFTTPLTK++K   K+ +T+   A L ++R   GFD KAY L+AK GYDF
Sbjct: 206 MIGSIEILEESFTTPLTKIEKGETKRLKTKSVEAFLPKRRITGGFDQKAYTLMAKVGYDF 265

Query: 61  TTHFDPKAYKLLAK 75
           TT  + K     +K
Sbjct: 266 TTLVNLKVLNTTSK 279

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
B0F6T3_CUCSA2.0e-0658.93Gypsy-like retrotransposase OS=Cucumis sativus PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778660504|ref|XP_011656345.1|1.1e-1847.10PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus][more]
gi|659124357|ref|XP_008462116.1|4.0e-1673.68PREDICTED: uncharacterized protein LOC103500544 [Cucumis melo][more]
gi|659124357|ref|XP_008462116.1|2.4e-1343.48PREDICTED: uncharacterized protein LOC103500544 [Cucumis melo][more]
gi|659113191|ref|XP_008456446.1|4.6e-1249.41PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo][more]
gi|659099164|ref|XP_008450461.1|8.1e-0944.19PREDICTED: uncharacterized protein LOC103492056 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001063Cla001063.1mRNA