Cla001061 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001061
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 11791579 .. 11791830 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTAGCAGATTTGATGGCTAATTCCAGCTCCTCTTGCCATCATAATGTGGCTGCGTCAAGCTTGAAGAGGAAGAGGAGAGAAGCACGAGAGGTTCGCCGGAAAGTTCAGAAGCTTCGGTGGGTGGTGCCCGGTGGTCGAGGGTTGCGACAGGAACATCTCTTCGCCAAAACAGCTCATTATATATTGCATTTGAGATTGAAAGTTTGTGCTCTTGAAACTGTTCTCAAATTGCAGGAAGAGGCTTGA

mRNA sequence

ATGGCTTTAGCAGATTTGATGGCTAATTCCAGCTCCTCTTGCCATCATAATGTGGCTGCGTCAAGCTTGAAGAGGAAGAGGAGAGAAGCACGAGAGGTTCGCCGGAAAGTTCAGAAGCTTCGGTGGGTGGTGCCCGGTGGTCGAGGGTTGCGACAGGAACATCTCTTCGCCAAAACAGCTCATTATATATTGCATTTGAGATTGAAAGTTTGTGCTCTTGAAACTGTTCTCAAATTGCAGGAAGAGGCTTGA

Coding sequence (CDS)

ATGGCTTTAGCAGATTTGATGGCTAATTCCAGCTCCTCTTGCCATCATAATGTGGCTGCGTCAAGCTTGAAGAGGAAGAGGAGAGAAGCACGAGAGGTTCGCCGGAAAGTTCAGAAGCTTCGGTGGGTGGTGCCCGGTGGTCGAGGGTTGCGACAGGAACATCTCTTCGCCAAAACAGCTCATTATATATTGCATTTGAGATTGAAAGTTTGTGCTCTTGAAACTGTTCTCAAATTGCAGGAAGAGGCTTGA

Protein sequence

MALADLMANSSSSCHHNVAASSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKLQEEA

Homology

[Close]

BLAST of Cla001061 vs. TrEMBL
Match: A0A0A0LQU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045930 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.9e-12
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1


Query: 1  MALADLMANSSSSCHHNVAASSLKRKRREAREVRRKVQKLR 42
          MALADLMANSSSSCHH+V ASSLKRKRREAREVRRKVQKLR
Sbjct: 1  MALADLMANSSSSCHHSVTASSLKRKRREAREVRRKVQKLR 41

[Close]

BLAST of Cla001061 vs. TrEMBL
Match: W9RNH5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027812 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-07
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 1


Query: 14 CHHNVAASSLKRKRREAR----EVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLK 71
          CH   A +  +R+RR +      V+ KV++L+ ++PGGRGL+ +HLF +TA YILHLRL+
Sbjct: 12 CHKGSAVARWRRRRRRSAARRGSVKSKVKRLQMLIPGGRGLKPDHLFLRTADYILHLRLQ 71

[Close]

BLAST of Cla001061 vs. TrEMBL
Match: A5B8W0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024249 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.1e-07
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 21 SSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKV 71
          S  K +RR  R VRRKV+KL+ ++PGGRGL+ + LF +TA YILHLRL++
Sbjct: 10 SGEKLRRRRRRSVRRKVKKLQRLIPGGRGLQPDRLFLRTADYILHLRLQM 59

[Close]

BLAST of Cla001061 vs. TrEMBL
Match: W9S869_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004928 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.4e-06
Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 23 LKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKLQE 82
          LKRK +    ++ K+ +L+ ++PGG+GL+ + L   TA YILHLRL++C LE +LKL +
Sbjct: 27 LKRKGK----LKMKLHRLQRIIPGGQGLKPDQLMVHTADYILHLRLQLCVLEALLKLHD 81

[Close]

BLAST of Cla001061 vs. TrEMBL
Match: G7LFI0_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_8g063410 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.7e-06
Identity = 27/57 (47.37%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 23 LKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKL 80
          LKR+RR    V RK++KL+ ++PGG GL+ + LF +TA +IL LRL++ AL+ + K+
Sbjct: 13 LKRRRRREVAVGRKMKKLQRIIPGGDGLKADQLFLRTAEHILQLRLQLNALQALTKI 69

[Close]

BLAST of Cla001061 vs. NCBI nr
Match: gi|700209199|gb|KGN64295.1| (hypothetical protein Csa_1G045930 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-11
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1


Query: 1  MALADLMANSSSSCHHNVAASSLKRKRREAREVRRKVQKLR 42
          MALADLMANSSSSCHH+V ASSLKRKRREAREVRRKVQKLR
Sbjct: 1  MALADLMANSSSSCHHSVTASSLKRKRREAREVRRKVQKLR 41

[Close]

BLAST of Cla001061 vs. NCBI nr
Match: gi|731374595|ref|XP_010653274.1| (PREDICTED: transcription factor PAR1 [Vitis vinifera])

HSP 1 Score: 64.7 bits (156), Expect = 8.7e-08
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1


Query: 21 SSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLKL 80
          S  K +RR  R VRRKV+KL+ ++PGGRGL+ + LF +TA YILHLR +V  L+ + K+
Sbjct: 10 SGEKLRRRRRRSVRRKVKKLQRLIPGGRGLQPDRLFLRTADYILHLRFQVNVLQALSKI 68

[Close]

BLAST of Cla001061 vs. NCBI nr
Match: gi|703113881|ref|XP_010100497.1| (hypothetical protein L484_027812 [Morus notabilis])

HSP 1 Score: 62.4 bits (150), Expect = 4.3e-07
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 1


Query: 14 CHHNVAASSLKRKRREAR----EVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLK 71
          CH   A +  +R+RR +      V+ KV++L+ ++PGGRGL+ +HLF +TA YILHLRL+
Sbjct: 12 CHKGSAVARWRRRRRRSAARRGSVKSKVKRLQMLIPGGRGLKPDHLFLRTADYILHLRLQ 71

[Close]

BLAST of Cla001061 vs. NCBI nr
Match: gi|147861934|emb|CAN78770.1| (hypothetical protein VITISV_024249 [Vitis vinifera])

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-07
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 21 SSLKRKRREAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKV 71
          S  K +RR  R VRRKV+KL+ ++PGGRGL+ + LF +TA YILHLRL++
Sbjct: 10 SGEKLRRRRRRSVRRKVKKLQRLIPGGRGLQPDRLFLRTADYILHLRLQM 59

[Close]

BLAST of Cla001061 vs. NCBI nr
Match: gi|719964726|ref|XP_010254299.1| (PREDICTED: transcription factor PAR1-like [Nelumbo nucifera])

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-06
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 22 SLKRKRR---EAREVRRKVQKLRWVVPGGRGLRQEHLFAKTAHYILHLRLKVCALETVLK 80
          SL+R+ R   + R VR KV+KL+ +VPGGRGL+ + LF +TA YILHLRL++  L+ + K
Sbjct: 9  SLRRRGRRVSDRRSVRMKVRKLQRLVPGGRGLQPDRLFLQTADYILHLRLQLKVLQALSK 68

The following BLAST results are available for this feature:

BLAST of Cla001061 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQU9_CUCSA	6.9e-12	95.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045930 PE=3 SV=1	[more]
W9RNH5_9ROSA	3.0e-07	47.54	Uncharacterized protein OS=Morus notabilis GN=L484_027812 PE=4 SV=1	[more]
A5B8W0_VITVI	5.1e-07	58.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024249 PE=4 SV=1	[more]
W9S869_9ROSA	7.4e-06	45.76	Uncharacterized protein OS=Morus notabilis GN=L484_004928 PE=4 SV=1	[more]
G7LFI0_MEDTR	9.7e-06	47.37	Uncharacterized protein OS=Medicago truncatula GN=MTR_8g063410 PE=4 SV=1	[more]

BLAST of Cla001061 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209199\|gb\|KGN64295.1\|	1.0e-11	95.12	hypothetical protein Csa_1G045930 [Cucumis sativus]	[more]
gi\|731374595\|ref\|XP_010653274.1\|	8.7e-08	52.54	PREDICTED: transcription factor PAR1 [Vitis vinifera]	[more]
gi\|703113881\|ref\|XP_010100497.1\|	4.3e-07	47.54	hypothetical protein L484_027812 [Morus notabilis]	[more]
gi\|147861934\|emb\|CAN78770.1\|	7.4e-07	58.00	hypothetical protein VITISV_024249 [Vitis vinifera]	[more]
gi\|719964726\|ref\|XP_010254299.1\|	1.6e-06	52.46	PREDICTED: transcription factor PAR1-like [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001061	Cla001061.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 20..43 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001061	Cla97C01G013010	Watermelon (97103) v2	wmwmbB242

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001061	Silver-seed gourd	carwmB0157
Cla001061	Cucumber (Chinese Long) v3	cucwmB060
Cla001061	Wax gourd	wgowmB499
Cla001061	Cucumber (Gy14) v1	cgywmB391
Cla001061	Cucurbita maxima (Rimu)	cmawmB165
Cla001061	Cucurbita maxima (Rimu)	cmawmB204
Cla001061	Cucurbita moschata (Rifu)	cmowmB151
Cla001061	Cucurbita moschata (Rifu)	cmowmB191
Cla001061	Watermelon (Charleston Gray)	wcgwmB150
Cla001061	Watermelon (Charleston Gray)	wcgwmB156
Cla001061	Cucurbita pepo (Zucchini)	cpewmB515
Cla001061	Cucurbita pepo (Zucchini)	cpewmB805
Cla001061	Bottle gourd (USVL1VR-Ls)	lsiwmB263
Cla001061	Melon (DHL92) v3.6.1	medwmB165