Cla001051 (gene) Watermelon (97103) v1

Overview
NameCla001051
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 11637065 .. 11637872 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGATCAGTATAACAATCAAGTACCGCGAAACGAAGGAAATAATGCAGCCAATAACCCATTGGCACAAGCTCGAGCTCAAATCCAAGCCCATCTAATTCTCCTTGCACATGACCGCAACAGGCCTATTCGAGATTACGTGTCTCCTAATCGCTATGACTTTTCACCTAGGATTACACGTCCAACATTCCAATGGTCGAGGTTTCAGATGAATCCAGTGATGCTTCAAATGCCTTCAAATGCTTCAAACTATGAGACAATTTGGAGGAGCATCAGGTGAGGATTCTCTTGCCCAGCTGAAGAGTTTTATTGAGATTTGCAACATGTTTGTGATCTCCAATATTACCACGGAGGAGATTTGATTAACATTGTTCCCTTTTTCTCTAAGGGATGAAGCAATATATATTGCGGCTAAAGACATTTTGGATTTCCAGAAACCATGAAGACTGGGAAGATAACGATTATGACTCAAGATTTGGAAGACGCAGAAGCAACTATTTAGGAGCGCCTGAAAATGACACAGTCACTGCATTACAAATGCAACTAGCTGCCATGACCAATTTACTGCAAACTAAGTAAATGCAGTGAATCAAGCTAACACAGGAAATGGTGGCCAAGTAAATGCAGTGAATCAAGTTGCTGCCATAAGTTGTGTTGGATTCAGTGAACCACATACATTCGATATGTGTCCTCAAAACCCGCAGTCGGTATGCTCCAATACTTATAATCCTAGTTGGCAAAATCATCCTAATTTCTCTTGGGGAGGAAATCAGCAACCAAGAGCAGCAAATCATGCAACAGGCTAA

mRNA sequence

ATGGTAGATCAGTATAACAATCAAGTACCGCGAAACGAAGGAAATAATGCAGCCAATAACCCATTGGCACAAGCTCGAGCTCAAATCCAAGCCCATCTAATTCTCCTTGCACATGACCGCAACAGGCCTATTCGAGATTACGTGTCTCCTAATCGCTATGACTTTTCACCTAGGATTACACGTCCAACATTCCAATGGTCGAGGTTTCAGATGAATCCAGTGATGCTTCAAATGCCTTCAAATGCTTCAAACTATGAGACAATTTGGAGGAGCATCAGTGAACCACATACATTCGATATGTGTCCTCAAAACCCGCAGTCGGTATGCTCCAATACTTATAATCCTAGTTGGCAAAATCATCCTAATTTCTCTTGGGGAGGAAATCAGCAACCAAGAGCAGCAAATCATGCAACAGGCTAA

Coding sequence (CDS)

ATGGTAGATCAGTATAACAATCAAGTACCGCGAAACGAAGGAAATAATGCAGCCAATAACCCATTGGCACAAGCTCGAGCTCAAATCCAAGCCCATCTAATTCTCCTTGCACATGACCGCAACAGGCCTATTCGAGATTACGTGTCTCCTAATCGCTATGACTTTTCACCTAGGATTACACGTCCAACATTCCAATGGTCGAGGTTTCAGATGAATCCAGTGATGCTTCAAATGCCTTCAAATGCTTCAAACTATGAGACAATTTGGAGGAGCATCAGTGAACCACATACATTCGATATGTGTCCTCAAAACCCGCAGTCGGTATGCTCCAATACTTATAATCCTAGTTGGCAAAATCATCCTAATTTCTCTTGGGGAGGAAATCAGCAACCAAGAGCAGCAAATCATGCAACAGGCTAA

Protein sequence

MVDQYNNQVPRNEGNNAANNPLAQARAQIQAHLILLAHDRNRPIRDYVSPNRYDFSPRITRPTFQWSRFQMNPVMLQMPSNASNYETIWRSISEPHTFDMCPQNPQSVCSNTYNPSWQNHPNFSWGGNQQPRAANHATG
Homology
[Close]
BLAST of Cla001051 vs. TrEMBL
Match: U5CZQ0_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00005610 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.6e-06
Identity = 26/58 (44.83%), Postives = 32/58 (55.17%), Query Frame = 1 

Query: 96  HTFDMCPQNPQSVC--------------SNTYNPSWQNHPNFSWGGNQQPRAANHATG 140
           HTF+ CP NP SVC              SN+YNP+W++HPNFSWGG     +   A G
Sbjct: 37  HTFENCPSNPASVCYVGNQNFNRNNNPYSNSYNPAWKHHPNFSWGGQGASSSGAQAQG 94

[Close]
BLAST of Cla001051 vs. NCBI nr
Match: gi|985471186|ref|XP_015381177.1| (PREDICTED: uncharacterized protein LOC107174641 [Citrus sinensis])

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 40/115 (34.78%), Postives = 52/115 (45.22%), Query Frame = 1 

Query: 36  LAHDRNRPIRDYVSPNRYDFSPRITRPTFQWSRFQMNPVMLQMPSNASNYETIWRSISEP 95
           +A+DR+R IRDY         P I RP  Q   F++ PV+ QMP N   + ++     +P
Sbjct: 1   MANDRDRAIRDYAVLTPQAIHPEIVRPDVQADNFKLKPVIFQMPQNVGQFNSL--PSEDP 60

Query: 96  HTF----------------DMCPQNPQSVCSNTYNPSWQNHPNFSWGGNQQPRAA 135
           H                      QN  +  SNTYNP W+ HPNFSW    Q  AA
Sbjct: 61  HLHLKLFLEVSDAFKITGASFYRQNQDNPYSNTYNPGWRQHPNFSWSYQNQSAAA 113

[Close]
BLAST of Cla001051 vs. NCBI nr
Match: gi|985436340|ref|XP_015383082.1| (PREDICTED: uncharacterized protein LOC107175818 [Citrus sinensis])

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-08
Identity = 37/99 (37.37%), Postives = 50/99 (50.51%), Query Frame = 1 

Query: 36  LAHDRNRPIRDYVSPNRYDFSPRITRPTFQWSRFQMNPVMLQMPSNASNYETIWRSISEP 95
           +A+DR+R IRDY         P I RP  Q   F++  VM QM      ++     ++  
Sbjct: 1   MANDRDRAIRDYTVLTPQAIHPGIVRPDVQADNFELKLVMFQMLQTVGQFK-----VNYV 60

Query: 96  HTFDMCPQNPQSVCSNTYNPSWQNHPNFSWGGNQQPRAA 135
            +F+   QN  +  SNTYNP W+ H NFSW    QP AA
Sbjct: 61  GSFNR--QNQDNPYSNTYNPGWRQHLNFSWSNQNQPAAA 92

[Close]
BLAST of Cla001051 vs. NCBI nr
Match: gi|698464914|ref|XP_009782549.1| (PREDICTED: uncharacterized protein LOC104231280 [Nicotiana sylvestris])

HSP 1 Score: 65.5 bits (158), Expect = 8.6e-08
Identity = 31/74 (41.89%), Postives = 38/74 (51.35%), Query Frame = 1 

Query: 70  QMNPVMLQM-PSNASNYETIWRSISEPHTFDMCPQNPQSVC-------------SNTYNP 129
           Q+N + L M        +       E HT DMCP NP+S+C              NTYNP
Sbjct: 210 QVNQMNLSMNKQQVQQVQAFCEICEEGHTSDMCPTNPESICFVGNSNRGQTNQYGNTYNP 269

[Close]
BLAST of Cla001051 vs. NCBI nr
Match: gi|698444360|ref|XP_009766114.1| (PREDICTED: uncharacterized protein LOC104217532 [Nicotiana sylvestris])

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-07
Identity = 30/82 (36.59%), Postives = 43/82 (52.44%), Query Frame = 1 

Query: 70  QMNPVMLQMPSNASNYETI---WRSISEPHTFDMCPQNPQSVC----------------S 129
           QM  +++Q P    + + +    +   + H  DMCP NP+S+                  
Sbjct: 283 QMTQMIMQQPQTMQHVQQMNICCKLYGDSHMSDMCPTNPESIYYVGQQNRGPPNQNAQYG 342

Query: 130 NTYNPSWQNHPNFSWGGNQQPR 133
           N+YNP+W+NHPNFSWGGNQQ R
Sbjct: 343 NSYNPNWRNHPNFSWGGNQQSR 364

[Close]
BLAST of Cla001051 vs. NCBI nr
Match: gi|697142843|ref|XP_009625525.1| (PREDICTED: uncharacterized protein LOC104116385 [Nicotiana tomentosiformis])

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-07
Identity = 31/81 (38.27%), Postives = 40/81 (49.38%), Query Frame = 1 

Query: 71  MNPVML---QMPSNASNYETIWRSISEPHTFDMCPQNPQSVC----------------SN 130
           MN +++   Q   +  +  T W    E HT D+CP NP+S+                  N
Sbjct: 212 MNKIIMHHTQQMQHVQHMSTCWELYGEGHTSDICPVNPESIYCVGQQARGPMNQNAQYGN 271

Query: 131 TYNPSWQNHPNFSWGGNQQPR 133
           TYN +W NHPNFSWGGNQ  R
Sbjct: 272 TYNSNWTNHPNFSWGGNQNIR 292

The following BLAST results are available for this feature:
BLAST of Cla001051 vs. TrEMBL
Match NameE-valueIdentityDescription
U5CZQ0_AMBTC5.6e-0644.83Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00005610 PE=4 SV=... [more]
BLAST of Cla001051 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|985471186|ref|XP_015381177.1|3.1e-1034.78PREDICTED: uncharacterized protein LOC107174641 [Citrus sinensis][more]
gi|985436340|ref|XP_015383082.1|2.3e-0837.37PREDICTED: uncharacterized protein LOC107175818 [Citrus sinensis][more]
gi|698464914|ref|XP_009782549.1|8.6e-0841.89PREDICTED: uncharacterized protein LOC104231280 [Nicotiana sylvestris][more]
gi|698444360|ref|XP_009766114.1|2.5e-0736.59PREDICTED: uncharacterized protein LOC104217532 [Nicotiana sylvestris][more]
gi|697142843|ref|XP_009625525.1|3.3e-0738.27PREDICTED: uncharacterized protein LOC104116385 [Nicotiana tomentosiformis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001051Cla001051.1mRNA