Cla001049 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001049
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Yellow-leaf-specific gene 9 (AHRD V1 **-- D7LIM5_ARALL); contains Interpro domain(s) IPR010847 Harpin-induced 1
Location	Chr1 : 11583377 .. 11585762 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAACACTACTACAGAAGGAGAAGCATCATCATCATCAAAACAAAGCTCCAGTGTGCAACAACATGGGACAGCAAAGCGCACAAGGCTCTTGAGAATCACAGGAAGAAGCTTATTGGGTGTAATGATCCTTGTTGGTCTTGCAATTATTATATGTTGGCTTATTGTCTTCCCCAAAACCCCACATCTCATTGTGGAATCTGGCCAAGTCACACCTCAAAGTTTAACTGATAGAAAGCTCAAAGCCACCATAGCTTTCACTGTCAAAAGCTATAACCCTAACAAAAGAGCCTCCGTTCATATGGATTCTATGAGGATGATAGTCACTGATATGGGCCAGACGTTTTCGTCTTCCATCCCCAACTTCATCCAGCCGCCCGCGAACCAGACCGTCTTGACCTCGGCCGTCCAAGGCAGCTTCATATACCCATTTGGGCACATGAAGGAATTGGTGTTGATGGAGGGAATAAATCCGGAGCTTCGCTTCTCGGCTAAAGTCAGGTACAAATATTTTACTTTTAACACATATATATATAAAGTACGAATGTCGTTTGGTTTTGTTGATGTGAAAATCTTTATATATATATTTACTTTAAATTTATATTTGAAAAATTATTATAAATGAAAAGAAAATATCAAACTATTTATAAATATAGAAAAATTTATATTGGATCGATAGAAGTTGAAATTTTTCTATATTTGTAAATAGTTTGACTCATTTTGTTATATTTGAAAATAACTCTTTATATTAATTTGTTGAATTTACATAAATTACTCATAAGATAACCAGTTTATTTTTTTTGTTTTTAGATTCTTAAAGAATAAATTTGTCGAATTTACCTAAATTACCCATTTTATTTTTGTTTTTAAATTTTTAATGAGTAAATTTGTCAAATTTATATTTTGGGTTGGGGGTTGGAAGAATAAATATAAAATTATATTTTGAGTTATTGCGAGTTCAAAGAGGAAATTACTAACATAGTAACTGTTTTATCTTTTGTTTTTAGATTTTGAAAGAAAAAAAGTTTGACGGATTTATATTTTGGTTTGGGAGTTCAAAGAATTAAGTATAAAATTATATTTGGGATTAGTAGGAGTTCGAAGAATAAATTAAGGCTCTGAAATTTGAAAATAAAAGATTAAAATAAAAAGAGTGCTTTTTAGATATGTGTTTAGTGGCAGAATTTAGAAATTAAATTCTAATTTAAACAATTGCAAATTAGTTGTAGTTCTCTATAAACTATCAATTGACAATAAACTATTATTAATTTATTTATGAACATGATTTTATGTTAAAAAAATTGTATAATTACTATTTTGTAATATTACATCGGGATGTTTTCAAAAATAGAAAAATTGTTGAAAATAACTACAAATATAGCAAAATTTTTCTTTCGATCTGTGATAGACCGCGATAGACCTAGATAGACATCTATTAATTTACTAAATAAACACGAATAGATGTCTATCACAATCTATCACACATATAAGTAAAATTTTGCTATATTTGTAAATAGTTTGATATTTTTTTATTTATAATAATTTTCTTATTTTATATATAACCTATGGGATAAACTGAATTTTTTGTCACTATGGTTAATTTGGAAGAATTTAAAATTTAGGTTTTATGGTTTATAATTAGAATTTAACTTTTAAGGTTTGAAAAAAGCTTCATAAATAACCCCTATGGTAGAGATTATTTAAGAATATGACAATATATGAAGTTGTATCAAACCAACGAAACTAAGTTATAAATTTTAATACCATATGAAGTAGTTGTAACTTTATCTCAATCATATAGACCAAATTTGAAATATAATCTAATTTATTATAATTACATAATACATATTTTAATTTAAAAAATTGAATTGAGTTTTTAACATGACATATTATTTTATTTCTAAATTTTTTTGTTTTAATTTAATATAATTCTACCTTTTAAATTTTAAAACTCAAATTCTGGATACAATAAAAAAATAAAAATATTATTTTCATAATTTACATGGTTTAAATCACAGAATCTAGGAACAGTTTTCAGAGACAGAGTACAAGTTATCTGTTAAACACATATTCGCTAACTTTGGAAATCTAAAAACATAAAATAAAATCTGGATTGCAAACCAAACATGCCCTTAATTTCTTTCTTTTTTGTTATCTACTTTCTAAGAGTGTTATCAAAATCTAAGCCATTTTTTTACACTAAAAAATAGTAGGTTTTGAAATTTTGTCTCACTCTAAAAATTTCTAGCTCTATTCCTATCAGTTATACTTACGAGAGATGGACGTCGAAACGTCGGTCACTGGAGGTCTATTGTAATCACCTCAGGCTTAAGATCAATGGTTCTACACCTTTTGATAATACCAAATGCAAAGTGGATCTTTGA

mRNA sequence

ATGGGGAACACTACTACAGAAGGAGAAGCATCATCATCATCAAAACAAAGCTCCAGTGTGCAACAACATGGGACAGCAAAGCGCACAAGGCTCTTGAGAATCACAGGAAGAAGCTTATTGGGTGTAATGATCCTTGTTGGTCTTGCAATTATTATATGTTGGCTTATTGTCTTCCCCAAAACCCCACATCTCATTGTGGAATCTGGCCAAGTCACACCTCAAAGTTTAACTGATAGAAAGCTCAAAGCCACCATAGCTTTCACTGTCAAAAGCTATAACCCTAACAAAAGAGCCTCCGTTCATATGGATTCTATGAGGATGATAGTCACTGATATGGGCCAGACGTTTTCGTCTTCCATCCCCAACTTCATCCAGCCGCCCGCGAACCAGACCGTCTTGACCTCGGCCGTCCAAGGCAGCTTCATATACCCATTTGGGCACATGAAGGAATTGGTGTTGATGGAGGGAATAAATCCGGAGCTTCGCTTCTCGGCTAAAGTCAGTTATACTTACGAGAGATGGACGTCGAAACGTCGGTCACTGGAGGTCTATTGTAATCACCTCAGGCTTAAGATCAATGGTTCTACACCTTTTGATAATACCAAATGCAAAGTGGATCTTTGA

Coding sequence (CDS)

ATGGGGAACACTACTACAGAAGGAGAAGCATCATCATCATCAAAACAAAGCTCCAGTGTGCAACAACATGGGACAGCAAAGCGCACAAGGCTCTTGAGAATCACAGGAAGAAGCTTATTGGGTGTAATGATCCTTGTTGGTCTTGCAATTATTATATGTTGGCTTATTGTCTTCCCCAAAACCCCACATCTCATTGTGGAATCTGGCCAAGTCACACCTCAAAGTTTAACTGATAGAAAGCTCAAAGCCACCATAGCTTTCACTGTCAAAAGCTATAACCCTAACAAAAGAGCCTCCGTTCATATGGATTCTATGAGGATGATAGTCACTGATATGGGCCAGACGTTTTCGTCTTCCATCCCCAACTTCATCCAGCCGCCCGCGAACCAGACCGTCTTGACCTCGGCCGTCCAAGGCAGCTTCATATACCCATTTGGGCACATGAAGGAATTGGTGTTGATGGAGGGAATAAATCCGGAGCTTCGCTTCTCGGCTAAAGTCAGTTATACTTACGAGAGATGGACGTCGAAACGTCGGTCACTGGAGGTCTATTGTAATCACCTCAGGCTTAAGATCAATGGTTCTACACCTTTTGATAATACCAAATGCAAAGTGGATCTTTGA

Protein sequence

MGNTTTEGEASSSSKQSSSVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKTPHLIVESGQVTPQSLTDRKLKATIAFTVKSYNPNKRASVHMDSMRMIVTDMGQTFSSSIPNFIQPPANQTVLTSAVQGSFIYPFGHMKELVLMEGINPELRFSAKVSYTYERWTSKRRSLEVYCNHLRLKINGSTPFDNTKCKVDL

Homology

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BLAST of Cla001049 vs. Swiss-Prot
Match: Y1816_ARATH (Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.6e-10
Identity = 55/178 (30.90%), Postives = 87/178 (48.88%), Query Frame = 1


Query: 39  LLGVMILVGLAIIICWLIVFPKTPHLIVESGQVTPQSL--TDRKLKATIAFTVKSYNPNK 98
           LLG  +LVGLAI+I +L + PK     VE+  V   ++   D  + A  ++ +KSYNP K
Sbjct: 46  LLG--LLVGLAILITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEK 105

Query: 99  RASVHMDSMRMIVTDMGQTFS-SSIPNFIQPPANQT-VLTSAVQGSFIYPFGHMKELVLM 158
             SV   SMR+      Q+ +  +I  F Q P N+T + T  V  +      + ++L   
Sbjct: 106 HVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQLVSHNVALSKFNARDLRAE 165

Query: 159 EG---INPELRFSAKVSYTYERWTSKRRSLEVYCNHLRLKINGST--PFDNTKCKVDL 208
           +    I  E+  +A+VSY    + S+RR+L+  C  + + +  S+   F    CK  L
Sbjct: 166 KSKGTIEMEVYITARVSYKTWIFRSRRRTLKAVCTPVMINVTSSSLDGFQRVLCKTRL 221

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BLAST of Cla001049 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.1e-10
Identity = 56/198 (28.28%), Postives = 90/198 (45.45%), Query Frame = 1


Query: 23  HGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKTPHLIVESGQVT--PQSLTDRK 82
           HG      LL +  + ++ +++++G+A +I WLIV P+     V    +T    +  D  
Sbjct: 29  HGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNI 88

Query: 83  LKATIAFTVKSYNPNKRASVHMDSMRMIVTDMGQTFSS-SIPNFIQPPANQTVLTSAVQG 142
           L+  +A TV   NPNKR  ++ D +       G+ FS+ ++  F Q   N TVLT   QG
Sbjct: 89  LRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTFQG 148

Query: 143 SFIYPFGHMKELVL----MEGI-NPELRFSAKVSYTYERWTSKRRSLEVYCNHLRLKI-- 202
             +  F   +   L    + G+ N E++F  +V +       +R   +V C+ LRL +  
Sbjct: 149 QNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDLRLPLST 208

Query: 203 -NGSTPFDNT---KCKVD 207
            NG+T        KC  D
Sbjct: 209 SNGTTTTSTVFPIKCDFD 226

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BLAST of Cla001049 vs. TrEMBL
Match: A0A0A0LSV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G134270 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 6.2e-78
Identity = 146/198 (73.74%), Postives = 171/198 (86.36%), Query Frame = 1


Query: 10  ASSSSKQSSSVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKTPHLIVESG 69
           +SSSSK+ S V +HGTAKRTR+LRITGR+LLG+MILV +A+IICWLIVFP+ P +IVE+G
Sbjct: 15  SSSSSKEMSYVIKHGTAKRTRVLRITGRTLLGLMILVAIAMIICWLIVFPRNPDIIVETG 74

Query: 70  QVTPQSLTDRKLKATIAFTVKSYNPNKRASVHMDSMRMIVTDMGQTFSSSIPNFIQPPAN 129
           QV P SLTDRKL ATIAFTV SYNPNK+AS+ MDSMRMIV+DMG +F S IP+F QPP N
Sbjct: 75  QVIPHSLTDRKLNATIAFTVTSYNPNKKASIRMDSMRMIVSDMGLSFWSDIPSFTQPPKN 134

Query: 130 QTVLTSAVQGSFIYPFGHMKELVLMEGINPELRFSAKVSYTYERWTSKRRSLEVYCNHLR 189
           +TVLTS +QG+FIYPFGHMKEL+ +EGI+PELRFSAKVSY  ERWTS+ R +EVYC+ LR
Sbjct: 135 KTVLTSTIQGNFIYPFGHMKELMKLEGISPELRFSAKVSYIMERWTSRDRLVEVYCDSLR 194

Query: 190 LKINGSTPFDNTKCKVDL 208
           LK N ST FDN KCKVDL
Sbjct: 195 LKFNDSTVFDNKKCKVDL 212

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BLAST of Cla001049 vs. TrEMBL
Match: A0A0A0LVK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132770 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.1e-61
Identity = 123/205 (60.00%), Postives = 152/205 (74.15%), Query Frame = 1


Query: 3   NTTTEGEASSSSKQSSSVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKTP 62
           +TT +GEASSS K S    Q+ T K+TR++RI GRSLL V+ LVGLA++ICWL+VFPK P
Sbjct: 4   STTAKGEASSSKKSSKG--QNETTKKTRIIRIIGRSLLSVIFLVGLAMVICWLVVFPKNP 63

Query: 63  HLIVESGQVTPQSLTDRKLKATIAFTVKSYNPNKRASVHMDSMRMIVTDMGQTFSSSIPN 122
            + VE+G+V   + T   L ATI FTVK YNPNKRASVH+ SMRMIVT MGQ FSS IP 
Sbjct: 64  RIFVETGRVIAHNSTHNMLNATIVFTVKCYNPNKRASVHLHSMRMIVTSMGQAFSSVIPT 123

Query: 123 FIQPPANQTVLTSAVQGSFIYPFGHMKELVLMEGINPELRFSAKVSYTYERWTSKRRSLE 182
           F+Q P NQTVL+ AV+ +F YPFGH +E      INPEL FSA++SY+ E WTS+ R L 
Sbjct: 124 FMQTPGNQTVLSPAVEVNFDYPFGHQEE------INPELHFSAEISYSVEHWTSRPRLLL 183

Query: 183 VYCNHLRLKINGSTPFDNTKCKVDL 208
           +YCN+L L+IN +  F+NTKC VDL
Sbjct: 184 IYCNNLLLRINDTRTFENTKCNVDL 200

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BLAST of Cla001049 vs. TrEMBL
Match: A0A0A0LY09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132760 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 4.1e-61
Identity = 121/192 (63.02%), Postives = 148/192 (77.08%), Query Frame = 1


Query: 15  KQSSSVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKTPHLIVESGQVTPQ 74
           + +++   HG  KRTRL+R+ GRSLLGV+ LV L +IICWL+V PK+P LIVE+G+V   
Sbjct: 2   RSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIAH 61

Query: 75  SLTDRKLKATIAFTVKSYNPNKRASVHMDSMRMIVTDMGQTFSSSIPNFIQPPANQTVLT 134
           S T   L ATIAFTVKSYNPNKRAS+HMD MRMIV +MG  FSS+IP+F   P NQTVL+
Sbjct: 62  SSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLS 121

Query: 135 SAVQGSFIYPFGHMKELVLMEGINPELRFSAKVSYTYERWTSKRRSLEVYCNHLRLKING 194
           SAVQ +F YPFG+ +E      INPEL+FSA+VSY+ ++W SK R LE+YCNH+ LKIN 
Sbjct: 122 SAVQVNFEYPFGYTEE------INPELQFSAEVSYSIKKWMSKPRLLEIYCNHILLKIND 181

Query: 195 STPFDNTKCKVD 207
           ST FDNTKCKVD
Sbjct: 182 STAFDNTKCKVD 187

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BLAST of Cla001049 vs. TrEMBL
Match: A0A0A0LSU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132730 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.2e-54
Identity = 117/213 (54.93%), Postives = 152/213 (71.36%), Query Frame = 1


Query: 1   MGNTTTEGEASSSS----KQSSSVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLI 60
           M +TTT+GE +SSS     + S  +Q  T KRTR++RI GRSLL V+I + +AII CWL+
Sbjct: 1   MRSTTTQGEGASSSIIEAPKRSFCRQRETTKRTRIIRIIGRSLLSVIIFLSVAIITCWLV 60

Query: 61  VFPKTPHLIVESGQVTPQSLTDRKLKATIAFTVKSYNPNKRASVHMDSMRMIVTD-MGQT 120
           VFP+TP L+VE+ +VT    T+R L ATI F +KSYNPNK+AS+HMDS++MIV+D MG  
Sbjct: 61  VFPRTPRLMVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLP 120

Query: 121 FSSSIPNFIQPPANQTVLTSAVQGSFIYPFGHMKELVLMEGINPELRFSAKVSYTYERWT 180
           F S+IP F   P N+ V  S V+ +F+YPFG     V  + ++ ELRFSA+VSY   RW 
Sbjct: 121 FHSTIPTFTLMPRNEMVFNSTVRVNFMYPFGRP---VHSDWVHLELRFSAQVSYIVNRWR 180

Query: 181 SKRRSLEVYCNHLRLKINGSTP-FDNTKCKVDL 208
           SK R LE+YC+HL L+IN STP FD TKC+VDL
Sbjct: 181 SKPRLLEIYCDHLWLRINDSTPNFDKTKCRVDL 210

[Close]

BLAST of Cla001049 vs. TrEMBL
Match: A0A0A0LV68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132740 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-52
Identity = 117/211 (55.45%), Postives = 146/211 (69.19%), Query Frame = 1


Query: 4   TTTEGEASSSS----KQSSSVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFP 63
           TTT+GEASSSS     +  + +QHG AKRTR++RI GRSLL  ++L+G+AI+ CW +V P
Sbjct: 9   TTTQGEASSSSIIRAPKRGAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIP 68

Query: 64  KTPHLIVESGQVTPQSLTDRKLKATIAFTVKSYNPNKRASVHMDSMRMIVTD-MGQTFSS 123
           +TP L+VESGQVT    T RKL ATI F ++SYNPNKRAS+++DSM+M V + M   F S
Sbjct: 69  RTPQLMVESGQVTGYHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHS 128

Query: 124 SIPNFIQPPANQTVLTSAVQGSFIYPFGHMKELVLMEG-INPELRFSAKVSYTYERWTSK 183
            IPNF   P N TVLT  +  + IYPFG      L  G I+ EL FSAKVSY + RW SK
Sbjct: 129 DIPNFTMTPRNMTVLTPTILVNCIYPFGR----PLHAGWIHIELSFSAKVSYIFNRWASK 188

Query: 184 RRSLEVYCNHLRLKINGSTP-FDNTKCKVDL 208
            R +E+YCNH   KI+ S P FDN KC+VDL
Sbjct: 189 PRLMEIYCNHFWFKIDDSMPNFDNIKCQVDL 215

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BLAST of Cla001049 vs. TAIR10
Match: AT1G08160.1 (AT1G08160.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-11
Identity = 55/178 (30.90%), Postives = 87/178 (48.88%), Query Frame = 1


Query: 39  LLGVMILVGLAIIICWLIVFPKTPHLIVESGQVTPQSL--TDRKLKATIAFTVKSYNPNK 98
           LLG  +LVGLAI+I +L + PK     VE+  V   ++   D  + A  ++ +KSYNP K
Sbjct: 46  LLG--LLVGLAILITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEK 105

Query: 99  RASVHMDSMRMIVTDMGQTFS-SSIPNFIQPPANQT-VLTSAVQGSFIYPFGHMKELVLM 158
             SV   SMR+      Q+ +  +I  F Q P N+T + T  V  +      + ++L   
Sbjct: 106 HVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQLVSHNVALSKFNARDLRAE 165

Query: 159 EG---INPELRFSAKVSYTYERWTSKRRSLEVYCNHLRLKINGST--PFDNTKCKVDL 208
           +    I  E+  +A+VSY    + S+RR+L+  C  + + +  S+   F    CK  L
Sbjct: 166 KSKGTIEMEVYITARVSYKTWIFRSRRRTLKAVCTPVMINVTSSSLDGFQRVLCKTRL 221

[Close]

BLAST of Cla001049 vs. TAIR10
Match: AT2G35980.1 (AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-11
Identity = 56/198 (28.28%), Postives = 90/198 (45.45%), Query Frame = 1


Query: 23  HGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKTPHLIVESGQVT--PQSLTDRK 82
           HG      LL +  + ++ +++++G+A +I WLIV P+     V    +T    +  D  
Sbjct: 29  HGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNI 88

Query: 83  LKATIAFTVKSYNPNKRASVHMDSMRMIVTDMGQTFSS-SIPNFIQPPANQTVLTSAVQG 142
           L+  +A TV   NPNKR  ++ D +       G+ FS+ ++  F Q   N TVLT   QG
Sbjct: 89  LRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTFQG 148

Query: 143 SFIYPFGHMKELVL----MEGI-NPELRFSAKVSYTYERWTSKRRSLEVYCNHLRLKI-- 202
             +  F   +   L    + G+ N E++F  +V +       +R   +V C+ LRL +  
Sbjct: 149 QNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDLRLPLST 208

Query: 203 -NGSTPFDNT---KCKVD 207
            NG+T        KC  D
Sbjct: 209 SNGTTTTSTVFPIKCDFD 226

[Close]

BLAST of Cla001049 vs. TAIR10
Match: AT4G01410.1 (AT4G01410.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-07
Identity = 36/135 (26.67%), Postives = 60/135 (44.44%), Query Frame = 1


Query: 10  ASSSSKQSSSVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKTPHLIVESG 69
           A S+S    S  + G        R    ++  +++++G+  +I WL+  P  P L V   
Sbjct: 19  APSASSTPESYSKEGGGGGGDARRAICGAIFTILVILGIIALILWLVYRPHKPRLTVVGA 78

Query: 70  QVTPQSLTDRKL-KATIAFTVKSYNPNKRASVHMDSMRMIVTDMGQTFSSSIPNFIQPPA 129
            +   + T   L   ++ F+V + NPN+R S+H D + M VT   Q  +  +P    PP 
Sbjct: 79  AIYDLNFTAPPLISTSVQFSVLARNPNRRVSIHYDKLSMYVTYKDQIITPPLP---LPPL 138

Query: 130 ----NQTVLTSAVQG 140
                 TV+ + V G
Sbjct: 139 RLGHKSTVVIAPVMG 150

[Close]

BLAST of Cla001049 vs. NCBI nr
Match: gi|659071871|ref|XP_008462326.1| (PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 1.8e-78
Identity = 150/208 (72.12%), Postives = 175/208 (84.13%), Query Frame = 1


Query: 1   MGNTTTEGEASSSS-KQSSSVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFP 60
           M +  T+GE SSSS K+ S V++HG AKRTR+LRITGR+LLG+MILV +A+IICWLIVFP
Sbjct: 1   MRSIATQGEPSSSSAKEISYVEKHGAAKRTRVLRITGRTLLGLMILVAIAMIICWLIVFP 60

Query: 61  KTPHLIVESGQVTPQSLTDRKLKATIAFTVKSYNPNKRASVHMDSMRMIVTDMGQTFSSS 120
           + P LIVE+G+V P SLTDRKL ATIAFTV SYNPNK+AS+ MDSMRMIVTDMG +F S 
Sbjct: 61  RNPDLIVETGKVIPHSLTDRKLNATIAFTVTSYNPNKKASIRMDSMRMIVTDMGLSFWSD 120

Query: 121 IPNFIQPPANQTVLTSAVQGSFIYPFGHMKELVLMEGINPELRFSAKVSYTYERWTSKRR 180
           IP+F QPP N+TVL S +QG+FIYPFGHMKELV +EGI+P+LRFSAKVSY  ERWTS+ R
Sbjct: 121 IPSFTQPPKNKTVLNSTIQGNFIYPFGHMKELVKLEGISPDLRFSAKVSYIMERWTSRGR 180

Query: 181 SLEVYCNHLRLKINGSTPFDNTKCKVDL 208
            LEVYC+ LRLK N ST FDN KCKVDL
Sbjct: 181 LLEVYCDSLRLKFNDSTVFDNKKCKVDL 208

[Close]

BLAST of Cla001049 vs. NCBI nr
Match: gi|449443378|ref|XP_004139454.1| (PREDICTED: uncharacterized protein LOC101218532 [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 9.0e-78
Identity = 146/198 (73.74%), Postives = 171/198 (86.36%), Query Frame = 1


Query: 10  ASSSSKQSSSVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKTPHLIVESG 69
           +SSSSK+ S V +HGTAKRTR+LRITGR+LLG+MILV +A+IICWLIVFP+ P +IVE+G
Sbjct: 15  SSSSSKEMSYVIKHGTAKRTRVLRITGRTLLGLMILVAIAMIICWLIVFPRNPDIIVETG 74

Query: 70  QVTPQSLTDRKLKATIAFTVKSYNPNKRASVHMDSMRMIVTDMGQTFSSSIPNFIQPPAN 129
           QV P SLTDRKL ATIAFTV SYNPNK+AS+ MDSMRMIV+DMG +F S IP+F QPP N
Sbjct: 75  QVIPHSLTDRKLNATIAFTVTSYNPNKKASIRMDSMRMIVSDMGLSFWSDIPSFTQPPKN 134

Query: 130 QTVLTSAVQGSFIYPFGHMKELVLMEGINPELRFSAKVSYTYERWTSKRRSLEVYCNHLR 189
           +TVLTS +QG+FIYPFGHMKEL+ +EGI+PELRFSAKVSY  ERWTS+ R +EVYC+ LR
Sbjct: 135 KTVLTSTIQGNFIYPFGHMKELMKLEGISPELRFSAKVSYIMERWTSRDRLVEVYCDSLR 194

Query: 190 LKINGSTPFDNTKCKVDL 208
           LK N ST FDN KCKVDL
Sbjct: 195 LKFNDSTVFDNKKCKVDL 212

[Close]

BLAST of Cla001049 vs. NCBI nr
Match: gi|659071875|ref|XP_008462348.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 246.9 bits (629), Expect = 3.1e-62
Identity = 125/193 (64.77%), Postives = 148/193 (76.68%), Query Frame = 1


Query: 15  KQSSSVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKTPHLIVESGQVTPQ 74
           + +++   HG  KRTRL+R+ GRSLLGV+ LV L +IICWL+V PKTP LIVE+G+V   
Sbjct: 2   RSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVH 61

Query: 75  SLTDRKLKATIAFTVKSYNPNKRASVHMDSMRMIVTDMGQTFSSSIPNFIQPPANQTVLT 134
           S T   L ATIAFTVKSYNPNKRAS+HMD MRMIV +MG  FSS+IP+F   P NQTVL 
Sbjct: 62  SSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLW 121

Query: 135 SAVQGSFIYPFGHMKELVLMEGINPELRFSAKVSYTYERWTSKRRSLEVYCNHLRLKING 194
           SAVQ +F YPFG+ +E      INPEL+FSA+VSY+ E+W SK R LE+YCNHL LKIN 
Sbjct: 122 SAVQVNFEYPFGYTEE------INPELQFSAEVSYSVEKWMSKPRLLEIYCNHLLLKIND 181

Query: 195 STPFDNTKCKVDL 208
           ST FDNTKCKVDL
Sbjct: 182 STTFDNTKCKVDL 188

[Close]

BLAST of Cla001049 vs. NCBI nr
Match: gi|778664980|ref|XP_011648454.1| (PREDICTED: uncharacterized protein LOC105434469 [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 1.5e-61
Identity = 123/205 (60.00%), Postives = 152/205 (74.15%), Query Frame = 1


Query: 3   NTTTEGEASSSSKQSSSVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKTP 62
           +TT +GEASSS K S    Q+ T K+TR++RI GRSLL V+ LVGLA++ICWL+VFPK P
Sbjct: 4   STTAKGEASSSKKSSKG--QNETTKKTRIIRIIGRSLLSVIFLVGLAMVICWLVVFPKNP 63

Query: 63  HLIVESGQVTPQSLTDRKLKATIAFTVKSYNPNKRASVHMDSMRMIVTDMGQTFSSSIPN 122
            + VE+G+V   + T   L ATI FTVK YNPNKRASVH+ SMRMIVT MGQ FSS IP 
Sbjct: 64  RIFVETGRVIAHNSTHNMLNATIVFTVKCYNPNKRASVHLHSMRMIVTSMGQAFSSVIPT 123

Query: 123 FIQPPANQTVLTSAVQGSFIYPFGHMKELVLMEGINPELRFSAKVSYTYERWTSKRRSLE 182
           F+Q P NQTVL+ AV+ +F YPFGH +E      INPEL FSA++SY+ E WTS+ R L 
Sbjct: 124 FMQTPGNQTVLSPAVEVNFDYPFGHQEE------INPELHFSAEISYSVEHWTSRPRLLL 183

Query: 183 VYCNHLRLKINGSTPFDNTKCKVDL 208
           +YCN+L L+IN +  F+NTKC VDL
Sbjct: 184 IYCNNLLLRINDTRTFENTKCNVDL 200

[Close]

BLAST of Cla001049 vs. NCBI nr
Match: gi|778659286|ref|XP_011654134.1| (PREDICTED: protein YLS9-like isoform X2 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 5.8e-61
Identity = 121/192 (63.02%), Postives = 148/192 (77.08%), Query Frame = 1


Query: 15  KQSSSVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKTPHLIVESGQVTPQ 74
           + +++   HG  KRTRL+R+ GRSLLGV+ LV L +IICWL+V PK+P LIVE+G+V   
Sbjct: 2   RSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIAH 61

Query: 75  SLTDRKLKATIAFTVKSYNPNKRASVHMDSMRMIVTDMGQTFSSSIPNFIQPPANQTVLT 134
           S T   L ATIAFTVKSYNPNKRAS+HMD MRMIV +MG  FSS+IP+F   P NQTVL+
Sbjct: 62  SSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLS 121

Query: 135 SAVQGSFIYPFGHMKELVLMEGINPELRFSAKVSYTYERWTSKRRSLEVYCNHLRLKING 194
           SAVQ +F YPFG+ +E      INPEL+FSA+VSY+ ++W SK R LE+YCNH+ LKIN 
Sbjct: 122 SAVQVNFEYPFGYTEE------INPELQFSAEVSYSIKKWMSKPRLLEIYCNHILLKIND 181

Query: 195 STPFDNTKCKVD 207
           ST FDNTKCKVD
Sbjct: 182 STAFDNTKCKVD 187

The following BLAST results are available for this feature:

BLAST of Cla001049 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1816_ARATH	3.6e-10	30.90	Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1	[more]
YLS9_ARATH	6.1e-10	28.28	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]

BLAST of Cla001049 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSV0_CUCSA	6.2e-78	73.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G134270 PE=4 SV=1	[more]
A0A0A0LVK9_CUCSA	1.1e-61	60.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132770 PE=4 SV=1	[more]
A0A0A0LY09_CUCSA	4.1e-61	63.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132760 PE=4 SV=1	[more]
A0A0A0LSU5_CUCSA	2.2e-54	54.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132730 PE=4 SV=1	[more]
A0A0A0LV68_CUCSA	1.2e-52	55.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132740 PE=4 SV=1	[more]

BLAST of Cla001049 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08160.1	2.0e-11	30.90	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT2G35980.1	3.4e-11	28.28	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT4G01410.1	1.4e-07	26.67	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of Cla001049 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071871\|ref\|XP_008462326.1\|	1.8e-78	72.12	PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo]	[more]
gi\|449443378\|ref\|XP_004139454.1\|	9.0e-78	73.74	PREDICTED: uncharacterized protein LOC101218532 [Cucumis sativus]	[more]
gi\|659071875\|ref\|XP_008462348.1\|	3.1e-62	64.77	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|778664980\|ref\|XP_011648454.1\|	1.5e-61	60.00	PREDICTED: uncharacterized protein LOC105434469 [Cucumis sativus]	[more]
gi\|778659286\|ref\|XP_011654134.1\|	5.8e-61	63.02	PREDICTED: protein YLS9-like isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001049	Cla001049.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 88..183 score: 1.
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 27..207 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001049	Cucurbita maxima (Rimu)	cmawmB204
Cla001049	Cucurbita moschata (Rifu)	cmowmB151
Cla001049	Cucurbita moschata (Rifu)	cmowmB191
Cla001049	Melon (DHL92) v3.5.1	mewmB162
Cla001049	Watermelon (Charleston Gray)	wcgwmB150
Cla001049	Cucumber (Chinese Long) v2	cuwmB047
Cla001049	Cucurbita pepo (Zucchini)	cpewmB515
Cla001049	Cucurbita pepo (Zucchini)	cpewmB802
Cla001049	Bottle gourd (USVL1VR-Ls)	lsiwmB262
Cla001049	Bottle gourd (USVL1VR-Ls)	lsiwmB263
Cla001049	Cucumber (Gy14) v2	cgybwmB047
Cla001049	Melon (DHL92) v3.6.1	medwmB158
Cla001049	Melon (DHL92) v3.6.1	medwmB165
Cla001049	Silver-seed gourd	carwmB0157
Cla001049	Cucumber (Chinese Long) v3	cucwmB054
Cla001049	Cucumber (Chinese Long) v3	cucwmB060
Cla001049	Watermelon (97103) v2	wmwmbB242
Cla001049	Wax gourd	wgowmB499
Cla001049	Wax gourd	wgowmB514
Cla001049	Cucumber (Gy14) v1	cgywmB391
Cla001049	Cucumber (Gy14) v1	cgywmB394
Cla001049	Cucurbita maxima (Rimu)	cmawmB165