Cla001023 (gene) Watermelon (97103) v1

Overview
NameCla001023
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 21692794 .. 21693180 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCTGTACACCAATGCTTCCATCAGAGGGCAGACAGAAGTGTTAGACATAGAGAAGATGATTGAAGTTAGCGACGTAATCGCCCATAAAACTCTGCGTCGGTTGATGAGAGGATCCCAGCATTTGCCAGAGCCTGCTAAGGCCACCAAAAGACCTCATCAACCCATTCCACCATCTAAAGTGTCGCCTCCAAAGCTGCCAATGCAGAAGAAAGGGAAGGCATCCAAACTGAAACCCAAGGCCGTGGCATGTCCTGATGCCACCATTAGACCTTCCCCAACTTCAAGCTCTTCATTCCCACTTCCAACAAATAGAAGAGAACCAACCCCACCTCCACCTCCTCCTGAGACGCATCGCCCCAAAGCCACCTCCACCTCCTCTTAA

mRNA sequence

ATGAACCTGTACACCAATGCTTCCATCAGAGGGCAGACAGAAGTGTTAGACATAGAGAAGATGATTGAAGTTAGCGACGTAATCGCCCATAAAACTCTGCGTCGGTTGATGAGAGGATCCCAGCATTTGCCAGAGCCTGCTAAGGCCACCAAAAGACCTCATCAACCCATTCCACCATCTAAAGTGTCGCCTCCAAAGCTGCCAATGCAGAAGAAAGGGAAGGCATCCAAACTGAAACCCAAGGCCGTGGCATGTCCTGATGCCACCATTAGACCTTCCCCAACTTCAAGCTCTTCATTCCCACTTCCAACAAATAGAAGAGAACCAACCCCACCTCCACCTCCTCCTGAGACGCATCGCCCCAAAGCCACCTCCACCTCCTCTTAA

Coding sequence (CDS)

ATGAACCTGTACACCAATGCTTCCATCAGAGGGCAGACAGAAGTGTTAGACATAGAGAAGATGATTGAAGTTAGCGACGTAATCGCCCATAAAACTCTGCGTCGGTTGATGAGAGGATCCCAGCATTTGCCAGAGCCTGCTAAGGCCACCAAAAGACCTCATCAACCCATTCCACCATCTAAAGTGTCGCCTCCAAAGCTGCCAATGCAGAAGAAAGGGAAGGCATCCAAACTGAAACCCAAGGCCGTGGCATGTCCTGATGCCACCATTAGACCTTCCCCAACTTCAAGCTCTTCATTCCCACTTCCAACAAATAGAAGAGAACCAACCCCACCTCCACCTCCTCCTGAGACGCATCGCCCCAAAGCCACCTCCACCTCCTCTTAA

Protein sequence

MNLYTNASIRGQTEVLDIEKMIEVSDVIAHKTLRRLMRGSQHLPEPAKATKRPHQPIPPSKVSPPKLPMQKKGKASKLKPKAVACPDATIRPSPTSSSSFPLPTNRREPTPPPPPPETHRPKATSTSS
Homology
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BLAST of Cla001023 vs. Swiss-Prot
Match: SIK2_PONAB (Serine/threonine-protein kinase SIK2 OS=Pongo abelii GN=SIK2 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06
Identity = 30/89 (33.71%), Postives = 45/89 (50.56%), Query Frame = 1 

Query: 40  SQHLPEPAKATKRPHQPIPPSKVSPPKLP-MQKKGKASKLKPKAVACPDATIRPSPTSSS 99
           SQ LP P + T  P Q  PP  ++ P  P ++   +  +  P      +  ++P P++SS
Sbjct: 748 SQQLPLPRQETPPPSQQAPPFSLTQPLSPVLEPSSEQMQYSPFLSQYQEMQLQPLPSTSS 807

Query: 100 --SFPLPT--NRREPTPPPPPPETHRPKA 124
             + PLPT   +++P PPPPPP   +P A
Sbjct: 808 PRAAPLPTQLQQQQPPPPPPPPPPRQPGA 836

The following BLAST results are available for this feature:
BLAST of Cla001023 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SIK2_PONAB3.3e-0633.71Serine/threonine-protein kinase SIK2 OS=Pongo abelii GN=SIK2 PE=2 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001023Cla001023.1mRNA