Cla001022 (gene) Watermelon (97103) v1

Overview
NameCla001022
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 21692500 .. 21692772 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGACGCAATCCGAGTATTGGCGAAGCCCGAGGCGAAGTGGGACGTTTCACCCATAGGTATTAAAACGCTATCTGCTAGCAGCCTACGGCCAGAGGCCAACCTGTGGGTATACTTGGTGAAGAAGCGGCTGATCCCTACGACACATGACAAAATAGTGTCAAGGGATCGGGTGATGGCAGCTTACTGCATTATGCGTCTCATCCCCCTTGATATCGGATGCATAATCGCGGCGCAGATAAGAGGGGTGTTTAACAAGCCAAGAGGCTAA

mRNA sequence

ATGGAAGACGCAATCCGAGTATTGGCGAAGCCCGAGGCGAAGTGGGACGTTTCACCCATAGGTATTAAAACGCTATCTGCTAGCAGCCTACGGCCAGAGGCCAACCTGTGGGTATACTTGGTGAAGAAGCGGCTGATCCCTACGACACATGACAAAATAGTGTCAAGGGATCGGGTGATGGCAGCTTACTGCATTATGCGTCTCATCCCCCTTGATATCGGATGCATAATCGCGGCGCAGATAAGAGGGGTGTTTAACAAGCCAAGAGGCTAA

Coding sequence (CDS)

ATGGAAGACGCAATCCGAGTATTGGCGAAGCCCGAGGCGAAGTGGGACGTTTCACCCATAGGTATTAAAACGCTATCTGCTAGCAGCCTACGGCCAGAGGCCAACCTGTGGGTATACTTGGTGAAGAAGCGGCTGATCCCTACGACACATGACAAAATAGTGTCAAGGGATCGGGTGATGGCAGCTTACTGCATTATGCGTCTCATCCCCCTTGATATCGGATGCATAATCGCGGCGCAGATAAGAGGGGTGTTTAACAAGCCAAGAGGCTAA

Protein sequence

MEDAIRVLAKPEAKWDVSPIGIKTLSASSLRPEANLWVYLVKKRLIPTTHDKIVSRDRVMAAYCIMRLIPLDIGCIIAAQIRGVFNKPRG
Homology
[Close]
BLAST of Cla001022 vs. TrEMBL
Match: A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.0e-08
Identity = 34/97 (35.05%), Postives = 54/97 (55.67%), Query Frame = 1 

Query: 1   MEDAIRVLAKPEAKWDVSPIGIKTLSASSLRPEANLWVYLVKKRLIPTTHDKIVSRDRVM 60
           +E A++ +  PE   D++P G   L   +L  EA +W+  VKK+++PT HD  +S +RVM
Sbjct: 18  LESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDNNISMERVM 77

Query: 61  AAYCIMRLIPLDI----------GCIIAAQIRGVFNK 88
             YCIM+ I +++           CIIA   + V +K
Sbjct: 78  LVYCIMKEILVEVKDGIWSLSILHCIIAIHTKNVKSK 114

[Close]
BLAST of Cla001022 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.1e-06
Identity = 27/90 (30.00%), Postives = 52/90 (57.78%), Query Frame = 1 

Query: 1   MEDAIRVLAKPEAKWDVSPIGIKTLSASSLRPEANLWVYLVKKRLIPTTHDKIVSRDRVM 60
           +++ ++ +A   A+W +S  G  T +   L+P A +W + +  RL+ +TH K +SR+R +
Sbjct: 157 LKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNRAI 216

Query: 61  AAYCIMRLIPLDIGCIIAAQIRGVFNKPRG 91
             Y ++   P+++G +I  QIR    K +G
Sbjct: 217 LLYAVLVGKPINVGRLIIDQIRACAEKGKG 246

[Close]
BLAST of Cla001022 vs. NCBI nr
Match: gi|700199714|gb|KGN54872.1| (hypothetical protein Csa_4G569710 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 7.2e-08
Identity = 34/97 (35.05%), Postives = 54/97 (55.67%), Query Frame = 1 

Query: 1   MEDAIRVLAKPEAKWDVSPIGIKTLSASSLRPEANLWVYLVKKRLIPTTHDKIVSRDRVM 60
           +E A++ +  PE   D++P G   L   +L  EA +W+  VKK+++PT HD  +S +RVM
Sbjct: 18  LESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDNNISMERVM 77

Query: 61  AAYCIMRLIPLDI----------GCIIAAQIRGVFNK 88
             YCIM+ I +++           CIIA   + V +K
Sbjct: 78  LVYCIMKEILVEVKDGIWSLSILHCIIAIHTKNVKSK 114

The following BLAST results are available for this feature:
BLAST of Cla001022 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2P0_CUCSA5.0e-0835.05Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1[more]
W9RBS1_9ROSA8.1e-0630.00Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1[more]
BLAST of Cla001022 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199714|gb|KGN54872.1|7.2e-0835.05hypothetical protein Csa_4G569710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001022Cla001022.1mRNA