Cla001010 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001010
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 25823639 .. 25824223 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCAACCGGAGTTAATTGAAGACACAATCCGAGTATTGGCGAAGCTTGGGGCTAAGTGGGATGTTTCACCCACAGGTATCAAAACACTATCTGCTAGCAGCCTAAAACCAGAGGCGAACCTGTGGGTGTACCTAGTGAAGAAGCGGCTGATCCCTACAACGCATGACAAAACAGTGTCAAGGAATCGGGTGATGGCAGTTTACTGCATTATGCGTCGCATCCCCCTTGATGTCGGATGCATAATCGCGGCACAGATAAGAGGAGTATTTAACAAGCCAAGAGGCCAACTCTTTTTCCCCACTCTTATCATGAACCTGTACGCCAATGCTTCCATCGGAGGGCAGACGGTAGTGTTAGACGCAGAGAAGATGATTGAAGTTAGCGGCGTAATCGCCCATAAGACTCTGCGTCGGTTGATGAGAGGATCACAACATCTGCCAGAGCCTGCTAAGGCCACCAAAAGTCCTCATCAACCCATTCTGCCACCGAAAGTGTCGCCTCCAAAGCCGCCAACGCAGAAGAAGGGGAAGGCATCCAAACTCCCCAACCTCAAGCTCTTCACCCCCACTTCCAACAAATAG

mRNA sequence

ATGACTCAACCGGAGTTAATTGAAGACACAATCCGAGTATTGGCGAAGCTTGGGGCTAAGTGGGATGTTTCACCCACAGGTATCAAAACACTATCTGCTAGCAGCCTAAAACCAGAGGCGAACCTGTGGGTGTACCTAGTGAAGAAGCGGCTGATCCCTACAACGCATGACAAAACAGTGTCAAGGAATCGGGTGATGGCAGTTTACTGCATTATGCGTCGCATCCCCCTTGATGTCGGATGCATAATCGCGGCACAGATAAGAGGAGTATTTAACAAGCCAAGAGGCCAACTCTTTTTCCCCACTCTTATCATGAACCTGTACGCCAATGCTTCCATCGGAGGGCAGACGGTAGTGTTAGACGCAGAGAAGATGATTGAAGTTAGCGGCGTAATCGCCCATAAGACTCTGCGTCGGTTGATGAGAGGATCACAACATCTGCCAGAGCCTGCTAAGGCCACCAAAAGTCCTCATCAACCCATTCTGCCACCGAAAGTGTCGCCTCCAAAGCCGCCAACGCAGAAGAAGGGGAAGGCATCCAAACTCCCCAACCTCAAGCTCTTCACCCCCACTTCCAACAAATAG

Coding sequence (CDS)

ATGACTCAACCGGAGTTAATTGAAGACACAATCCGAGTATTGGCGAAGCTTGGGGCTAAGTGGGATGTTTCACCCACAGGTATCAAAACACTATCTGCTAGCAGCCTAAAACCAGAGGCGAACCTGTGGGTGTACCTAGTGAAGAAGCGGCTGATCCCTACAACGCATGACAAAACAGTGTCAAGGAATCGGGTGATGGCAGTTTACTGCATTATGCGTCGCATCCCCCTTGATGTCGGATGCATAATCGCGGCACAGATAAGAGGAGTATTTAACAAGCCAAGAGGCCAACTCTTTTTCCCCACTCTTATCATGAACCTGTACGCCAATGCTTCCATCGGAGGGCAGACGGTAGTGTTAGACGCAGAGAAGATGATTGAAGTTAGCGGCGTAATCGCCCATAAGACTCTGCGTCGGTTGATGAGAGGATCACAACATCTGCCAGAGCCTGCTAAGGCCACCAAAAGTCCTCATCAACCCATTCTGCCACCGAAAGTGTCGCCTCCAAAGCCGCCAACGCAGAAGAAGGGGAAGGCATCCAAACTCCCCAACCTCAAGCTCTTCACCCCCACTTCCAACAAATAG

Protein sequence

MTQPELIEDTIRVLAKLGAKWDVSPTGIKTLSASSLKPEANLWVYLVKKRLIPTTHDKTVSRNRVMAVYCIMRRIPLDVGCIIAAQIRGVFNKPRGQLFFPTLIMNLYANASIGGQTVVLDAEKMIEVSGVIAHKTLRRLMRGSQHLPEPAKATKSPHQPILPPKVSPPKPPTQKKGKASKLPNLKLFTPTSNK

Homology

[Close]

BLAST of Cla001010 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-14
Identity = 46/159 (28.93%), Postives = 84/159 (52.83%), Query Frame = 1


Query: 5   ELIEDTIRVLAKLGAKWDVSPTGIKTLSASSLKPEANLWVYLVKKRLIPTTHDKTVSRNR 64
           E +++ ++ +A LGA+W +S  G  T +   L+P A +W + +  RL+ +TH KT+SRNR
Sbjct: 155 EQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNR 214

Query: 65  VMAVYCIMRRIPLDVGCIIAAQIRGVFNKPRGQLFFPTLIMNLYANASIGGQTVVLDAEK 124
            + +Y ++   P++VG +I  QIR    K +G L+FP+LI  L   + +  +     +E 
Sbjct: 215 AILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHVAWEA----SEP 274

Query: 125 MIEVSGVIAHKTLRRLMRGSQHLPEPAKATKSPHQPILP 164
            +  +G +    + R+  G     E  +  +   +P  P
Sbjct: 275 RLRNTGAMDLVAITRISSGRSEKSEKGEEEEEQDEPSRP 309

[Close]

BLAST of Cla001010 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-10
Identity = 42/140 (30.00%), Postives = 76/140 (54.29%), Query Frame = 1


Query: 5   ELIEDTIRVLAKLGAKWDVSPTGIKTLSASSLKPEANLWVYLVKKRLIPTTHDKTVSRNR 64
           E +E  +  +A  GA W +SP G  T     LK  A +W + +  R +P+TH KTV+++R
Sbjct: 83  EQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDR 142

Query: 65  VMAVYCIMRRIPLDVGCIIAAQIRGV-FNKPRGQLFFPTLIMNLYANASIGGQTVVLDAE 124
           V+ +Y I+  I +++  I   +I+     + RG L+FP+LI  L+  A++         E
Sbjct: 143 VLLLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYH----KDE 202

Query: 125 KMIEVSGVIAHKTLRRLMRG 144
            ++  +G I+  ++ R+ +G
Sbjct: 203 AIVHNAGAISTLSISRISQG 218

[Close]

BLAST of Cla001010 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 37/101 (36.63%), Postives = 58/101 (57.43%), Query Frame = 1


Query: 42  LWVYLVKKRLIPTTHDKTVSRNRVMAVYCIMRRIPLDVGCIIAAQIRGVFNKPRGQLFFP 101
           +W+ L+KK+++PT H  T+S  RVM VYCIM++I +++G II+  I  +   PRG   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 102 TLIMNLYANASIGGQTVVLDAEKMIEV-SGVIAHKTLRRLM 142
            LI  L   A +     +L+    +EV  G+    TL R++
Sbjct: 88  YLIEQLCLRACL-----MLEKLPQVEVKDGIWLPSTLHRII 123

[Close]

BLAST of Cla001010 vs. TrEMBL
Match: A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.1e-07
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 1


Query: 22  DVSPTGIKTLSASSLKPEANLWVYLVKKRLIPTTHDKTVSRNRVMAVYCIMRRIPLDV-- 81
           D++PTG   L   +L  EA +W+  VKK+++PT HD  +S  RVM VYCIM+ I ++V  
Sbjct: 33  DITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDNNISMERVMLVYCIMKEILVEVKD 92

Query: 82  --------GCIIAAQIRGVFNK 94
                    CIIA   + V +K
Sbjct: 93  GIWSLSILHCIIAIHTKNVKSK 114

[Close]

BLAST of Cla001010 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 87.4 bits (215), Expect = 2.9e-14
Identity = 46/159 (28.93%), Postives = 84/159 (52.83%), Query Frame = 1


Query: 5   ELIEDTIRVLAKLGAKWDVSPTGIKTLSASSLKPEANLWVYLVKKRLIPTTHDKTVSRNR 64
           E +++ ++ +A LGA+W +S  G  T +   L+P A +W + +  RL+ +TH KT+SRNR
Sbjct: 155 EQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNR 214

Query: 65  VMAVYCIMRRIPLDVGCIIAAQIRGVFNKPRGQLFFPTLIMNLYANASIGGQTVVLDAEK 124
            + +Y ++   P++VG +I  QIR    K +G L+FP+LI  L   + +  +     +E 
Sbjct: 215 AILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHVAWEA----SEP 274

Query: 125 MIEVSGVIAHKTLRRLMRGSQHLPEPAKATKSPHQPILP 164
            +  +G +    + R+  G     E  +  +   +P  P
Sbjct: 275 RLRNTGAMDLVAITRISSGRSEKSEKGEEEEEQDEPSRP 309

[Close]

BLAST of Cla001010 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 73.9 bits (180), Expect = 3.4e-10
Identity = 42/140 (30.00%), Postives = 76/140 (54.29%), Query Frame = 1


Query: 5   ELIEDTIRVLAKLGAKWDVSPTGIKTLSASSLKPEANLWVYLVKKRLIPTTHDKTVSRNR 64
           E +E  +  +A  GA W +SP G  T     LK  A +W + +  R +P+TH KTV+++R
Sbjct: 83  EQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDR 142

Query: 65  VMAVYCIMRRIPLDVGCIIAAQIRGV-FNKPRGQLFFPTLIMNLYANASIGGQTVVLDAE 124
           V+ +Y I+  I +++  I   +I+     + RG L+FP+LI  L+  A++         E
Sbjct: 143 VLLLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYH----KDE 202

Query: 125 KMIEVSGVIAHKTLRRLMRG 144
            ++  +G I+  ++ R+ +G
Sbjct: 203 AIVHNAGAISTLSISRISQG 218

[Close]

BLAST of Cla001010 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-07
Identity = 37/101 (36.63%), Postives = 58/101 (57.43%), Query Frame = 1


Query: 42  LWVYLVKKRLIPTTHDKTVSRNRVMAVYCIMRRIPLDVGCIIAAQIRGVFNKPRGQLFFP 101
           +W+ L+KK+++PT H  T+S  RVM VYCIM++I +++G II+  I  +   PRG   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 102 TLIMNLYANASIGGQTVVLDAEKMIEV-SGVIAHKTLRRLM 142
            LI  L   A +     +L+    +EV  G+    TL R++
Sbjct: 88  YLIEQLCLRACL-----MLEKLPQVEVKDGIWLPSTLHRII 123

[Close]

BLAST of Cla001010 vs. NCBI nr
Match: gi|848854240|ref|XP_012847380.1| (PREDICTED: uncharacterized protein LOC105967324 [Erythranthe guttata])

HSP 1 Score: 63.9 bits (154), Expect = 3.5e-07
Identity = 37/106 (34.91%), Postives = 52/106 (49.06%), Query Frame = 1


Query: 8   EDTIRVLAKLGAKWDVSPTGIKTLSASSLKPEANLWVYLVKKRLIPTTHDKTVSRNRVMA 67
           E+ I+ L   G+KW+    G        L  EA +W+Y V  RL+PT         R+  
Sbjct: 205 EELIQTLCPRGSKWE---KGEHWFRRGELSREAKVWMYFVSSRLMPTKSTAKTYAPRLTL 264

Query: 68  VYCIMRRIPLDVGCIIAAQIRGVFNKPRGQLFFPTLIMNLYANASI 114
           +Y IM+R P++VG II A+IR         L FP+LI  L   A +
Sbjct: 265 MYAIMKRTPVNVGAIIHAEIRRCLGDTSLGLMFPSLITTLCDRAGV 307

[Close]

BLAST of Cla001010 vs. NCBI nr
Match: gi|700199714|gb|KGN54872.1| (hypothetical protein Csa_4G569710 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 5.9e-07
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 1


Query: 22  DVSPTGIKTLSASSLKPEANLWVYLVKKRLIPTTHDKTVSRNRVMAVYCIMRRIPLDV-- 81
           D++PTG   L   +L  EA +W+  VKK+++PT HD  +S  RVM VYCIM+ I ++V  
Sbjct: 33  DITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDNNISMERVMLVYCIMKEILVEVKD 92

Query: 82  --------GCIIAAQIRGVFNK 94
                    CIIA   + V +K
Sbjct: 93  GIWSLSILHCIIAIHTKNVKSK 114

The following BLAST results are available for this feature:

BLAST of Cla001010 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RBS1_9ROSA	2.0e-14	28.93	Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1	[more]
W9QTD9_9ROSA	2.3e-10	30.00	Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1	[more]
A0A0A0LAN0_CUCSA	1.4e-07	36.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1	[more]
A0A0A0L2P0_CUCSA	4.1e-07	40.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1	[more]

BLAST of Cla001010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703082781\|ref\|XP_010092041.1\|	2.9e-14	28.93	hypothetical protein L484_000844 [Morus notabilis]	[more]
gi\|703087370\|ref\|XP_010093253.1\|	3.4e-10	30.00	hypothetical protein L484_022412 [Morus notabilis]	[more]
gi\|700202594\|gb\|KGN57727.1\|	2.0e-07	36.63	hypothetical protein Csa_3G263250 [Cucumis sativus]	[more]
gi\|848854240\|ref\|XP_012847380.1\|	3.5e-07	34.91	PREDICTED: uncharacterized protein LOC105967324 [Erythranthe guttata]	[more]
gi\|700199714\|gb\|KGN54872.1\|	5.9e-07	40.24	hypothetical protein Csa_4G569710 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001010	Cla001010.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001010	Cucumber (Gy14) v2	cgybwmB050
Cla001010	Cucumber (Gy14) v2	cgybwmB045
Cla001010	Melon (DHL92) v3.6.1	medwmB151
Cla001010	Silver-seed gourd	carwmB0958
Cla001010	Cucumber (Chinese Long) v3	cucwmB051
Cla001010	Watermelon (97103) v2	wmwmbB247
Cla001010	Wax gourd	wgowmB497
Cla001010	Cucurbita maxima (Rimu)	cmawmB195
Cla001010	Cucurbita maxima (Rimu)	cmawmB385
Cla001010	Cucurbita moschata (Rifu)	cmowmB182
Cla001010	Cucurbita moschata (Rifu)	cmowmB377
Cla001010	Melon (DHL92) v3.5.1	mewmB156
Cla001010	Watermelon (Charleston Gray)	wcgwmB151
Cla001010	Watermelon (Charleston Gray)	wcgwmB157
Cla001010	Cucumber (Chinese Long) v2	cuwmB044
Cla001010	Cucumber (Chinese Long) v2	cuwmB050
Cla001010	Cucurbita pepo (Zucchini)	cpewmB034
Cla001010	Cucurbita pepo (Zucchini)	cpewmB519
Cla001010	Bottle gourd (USVL1VR-Ls)	lsiwmB206